TCONS_00055833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055833
Unique NameTCONS_00055833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055833 ID=TCONS_00055833|Name=TCONS_00055833|organism=Clytia hemisphaerica|type=transcript|length=323bp
ACTGAcgcgatttttgaagaaagcTGATTGACTTATGATCCTGAAATCGA
GTTATTTGGCAAGTGACGGTTACtgatttctttgatgttttgagTGTTTG
TTTCAAGAGCTAAAAGTTGCTTGAAATAGGATACTGATCTTGGAATTTTA
ATAACGAAAGTTTGACCAAAGTTTAACTTATTTGACTAATAGTCTTAAGT
TTTTGCCCTCATACATTGTATATATAGCATTTgtattttttctgtatttt
tttacCTTGTAATTTAGATTATCTAAATATTAGATTTACTTTATCTTATT
TAATATGAATTTTTAGTTCTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_261:17189..17511

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055833 ID=TCONS_00055833|Name=TCONS_00055833|organism=Clytia hemisphaerica|type=transcript|length=323bp|location=Sequence derived from alignment at scaffold_261:17189..17511 (Clytia hemisphaerica)
AGAAGAACTAAAAATTCATATTAAATAAGATAAAGTAAATCTAATATTTA
GATAATCTAAATTACAAGgtaaaaaaatacagaaaaaatacAAATGCTAT
ATATACAATGTATGAGGGCAAAAACTTAAGACTATTAGTCAAATAAGTTA
AACTTTGGTCAAACTTTCGTTATTAAAATTCCAAGATCAGTATCCTATTT
CAAGCAACTTTTAGCTCTTGAAACAAACActcaaaacatcaaagaaatca
GTAACCGTCACTTGCCAAATAACTCGATTTCAGGATCATAAGTCAATCAg
ctttcttcaaaaatcgcgTCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035153XLOC_035153Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055833-exon-scaffold_261-1491911889:17189..17511TCONS_00055833-exon-scaffold_261-1491911889:17189..17511Clytia hemisphaericaexon
TCONS_00055833-exon-scaffold_261-1510915933:17189..17511TCONS_00055833-exon-scaffold_261-1510915933:17189..17511Clytia hemisphaericaexon
TCONS_00055833-exon-scaffold_261-1575043694:17189..17511TCONS_00055833-exon-scaffold_261-1575043694:17189..17511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_261supercontigscaffold_261:17189..17511 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.60783	1.30858	0	1.13611	0	0	0	0.374545	1.35947	1.52527	1.06239	1.76161	2.50476	0	2.06506	0	1.4176	2.16675	5.36077	0	13.5662	13.3283	10.0983	6.84468	0	0	7.15281	0	9.32631	9.93153
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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