TCONS_00055841 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055841
Unique NameTCONS_00055841
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055841 ID=TCONS_00055841|Name=TCONS_00055841|organism=Clytia hemisphaerica|type=transcript|length=532bp
GCTTTTTCAGCTGTGAAACACAAATATTGAATGTTTGGATGGTGACAAAG
ACTCTagcttattttcattatttgtcCCGGATTCCTTTTGAAAGTTACTT
CAGTCTCAGTACTAGAGTCATGCTCTTCAGTATCAAAGGCAAGCCCAAAA
CTAGAGGTACACAAAAGTTTGTCAGGATCTGCGACAAAATTGCCTAAATG
GACAGTATCCTAACCAAGATATGGCAACAAGAAAACCAGCAAAACCTGCT
CTCAGACAGTACACAGAAACAAAAGACAAATGttttgagtgGCTGAcgaa
tacatttttgaaaagtgggAAAACAGAGGCACCTACACCTGGCTTGCAAA
GGAGGAAAGAAAAAAGGAGACTGTACCTGGCTATTCAAACTGTTGAAGGG
CTGCATGCAAACTACAGGTTTGTAATGATTTTGCATTCAAAGGTTTTTTA
GTGTGAAAtagtacaatgttaattttaagCAATCAATGTTTCTGCGAGTG
CTCCTGGCCTTGTATGTTTTAGAggtggtttt
Run BLAST on NCBI

transcript from alignment at scaffold_262:57103..57872+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055841 ID=TCONS_00055841|Name=TCONS_00055841|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at scaffold_262:57103..57872+ (Clytia hemisphaerica)
GCTTTTTCAGCTGTGAAACACAAATATTGAATGTTTGGATGGTGACAAAG
ACTCTagcttattttcattatttgtcCCGGATTCCTTTTGAAAGTTACTT
CAGTCTCAGTACTAGAGTCATGCTCTTCAGTATCAAAGGCAAGCCCAAAA
CTAGAGGTACACAAAAGTTTGTCAGGATCTGCGACAAAATTGCCTAAATG
GACAGTATCCTAACCAAGATATGGCAACAAGAAAACCAGCAAAACCTGCT
CTCAGACAGTACACAGAAACAAAAGACAAATGttttgaggtaatttttat
ccTATATTTTTCAATGGGATTAGTTTTTGTAGGTATTGTCACTAGCTGCT
AGTTCCCTTCAAGGGTTACGTGTTACTATATCCAGATAATTCTACTCCAT
ACAATATgtgaattgaaataaaatacatTGCATGATTTTAAAGgagcatt
tttttttattagagatAATGTTGACATGACTGTTCACTTGTGTGTTGTGA
CCAAAttataactttttatcattttagtgGCTGAcgaatacatttttgaa
aagtgggAAAACAGAGGCACCTACACCTGGCTTGCAAAGGAGGAAAGAAA
AAAGGAGACTGTACCTGGCTATTCAAACTGTTGAAGGGCTGCATGCAAAC
TACAGGTTTGTAATGATTTTGCATTCAAAGGTTTTTTAGTGTGAAAtagt
acaatgttaattttaagCAATCAATGTTTCTGCGAGTGCTCCTGGCCTTG
TATGTTTTAGAggtggtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035157XLOC_035157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055841-exon-scaffold_262-1491911889:57103..57391TCONS_00055841-exon-scaffold_262-1491911889:57103..57391Clytia hemisphaericaexon
TCONS_00055841-exon-scaffold_262-1510915933:57103..57391TCONS_00055841-exon-scaffold_262-1510915933:57103..57391Clytia hemisphaericaexon
TCONS_00055841-exon-scaffold_262-1575043694:57103..57391TCONS_00055841-exon-scaffold_262-1575043694:57103..57391Clytia hemisphaericaexon
TCONS_00055841-exon-scaffold_262-1491911889:57630..57872TCONS_00055841-exon-scaffold_262-1491911889:57630..57872Clytia hemisphaericaexon
TCONS_00055841-exon-scaffold_262-1510915933:57630..57872TCONS_00055841-exon-scaffold_262-1510915933:57630..57872Clytia hemisphaericaexon
TCONS_00055841-exon-scaffold_262-1575043694:57630..57872TCONS_00055841-exon-scaffold_262-1575043694:57630..57872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_262supercontigscaffold_262:57103..57872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.313394	0.67956	0.0141773	0	0.590043	0.556209	0	1.21138	0	0.143269	0.18603	0	0.250133	0	1.66305	1.57018	0	0	0	0.188968	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055841 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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