|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055849 ID=TCONS_00055849|Name=TCONS_00055849|organism=Clytia hemisphaerica|type=transcript|length=1879bp
ATTTTTTGTTATagagaaattttaaacataTAAAAATTATCATGCATGAC
TTCATGGAAAAGTATCTAACACATAAAAACATTGACAATTAACACAAACA
CGAGATTTACACATTATACACATACACAACTAACAGATAAGTAGTTTTCA
TAGATTTAAGTTTTGCATTGTTTACTGTCAACAGTTTCTAATTCCAAAAC
ttgttcaaaaagatttttattttcaactcaaAAAGATGGTTGTAACATGG
GGCAAGTCTATCTTTTGATATCATCTGCTGTAAGTCTTATTTCTGTTTAG
AAGTTGAGTGAGCTGAATGATGTCCACGTCTTGTTTGTTTCACCTGAAAC
CATCCTATCAGATGTTGggagaaagtttttgaaaaagaaagaattcaaTT
CAAGATTATCAGCTGTTTTTGTGGAtgaaagtcattgcattgaaaaaTGG
GGTACATCGGACAATCCAAAAAAGGCTGCTTTTCGTCAGTGTTACTCAAG
ACTTGCTGAAATTCGGTCATTTGTGGCTCGTAGATTACCGTTTGTTGCAA
TGACTGCTACTGCAACCAAGTCTACGCGTGAATTTATTATTTCCAACCTT
CAAATGATTACCCCAGAGTTGCTAATTATGGCACCTGGAAAGTCTAACAT
CACTTATTacgttaaaaaaacaaaaaatttagattGTGATACTTTATTTG
CACCATTGATCAAAAATCTAAGAGATAATGGTTACAAAGCAGAGAGGGTC
ATTATCTTTTGTGACAGAAGCAGATTAAGAGACCTATATgactcttttga
aaatgaattctACAATTATTATACGTATGATGAAAGACCATTTGCGATGT
TTCATCGCACAACGAGACCAGAAATCAAGGAAAGGATAATCAAAGCCTTT
CAAGACCCTGATGGTATGGTGAGAATTTTGATAGCCACCATAgcatcttt
tgaaaatgaattctACAATGATTATACGTATGATGAAAGACCATTTGCGA
TGTTTCATCGCACAACGAGACCAGAAATCAAGGAAAGGATAATCAAAGCC
TTTCAAGACCCTGATGGTATGGTGAGAATTTTGATAGCCACCATAgcatc
ttttgaaaatgaattctACAATGATTATACGTATGATGAAAGACCATTTG
CGATGTTTCATCGCACAACGAGACCAGAAATCAAGGAAAGGATAATCAAA
GCCTTTCAAGACCCTGATGGTATGGTGAGAATTTTGATAGCCACCATAGC
ATTTGGAATGGGGATTGATTGCAAGGATCTACATCGAATCATTCATTTTG
GGGTGCCATCAGATCTTGATTCATATTTCCAAGAATCTGGTAGAGCAGGA
AGAGATGACGCTCAATGCTCTGCCTTACTACTGCTTTATCCACGCTGCAT
TTCTCGCTATGTGAAAAAGGATATTAGAGATTATGTGACAAACACTCAAC
GTTGTAGGAGAGAAATTCATCTTGAGGTTTATGATTCAAAACCAAGCAAA
ATACAACCAAAACATACATGTTGTGACTTTTGTCACCAAAGATGTGAGTG
TGGAAATTGTGAATCACCTGAATTTTTAGTAGATCTTCTACAATCGAGAG
ACGAAATCGAACTGCCAGATAATGAACTTATTAATGATGAAGTAGAAGAA
CAAGTGGAATGCCGGGAGGGAGAATCAGAATCGGAACCAGAAATATAGAA
TGATGAACACTAGAACTTTACCACATATGATATGTTAGAGGATAAAATAT
ATAACATTTAGTTTTTTGTatatttcattttagtttgataACAGCCAGTC
AACTGTGGTCCTGGCAAATATATACATGGGTTGTTAGGTGTCTGTTGCAT
TTTGTCCATCAACTGTAGTTTATTTCCTT Run BLAST on NCBI transcript from alignment at scaffold_263:124857..127415- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055849 ID=TCONS_00055849|Name=TCONS_00055849|organism=Clytia hemisphaerica|type=transcript|length=2559bp|location=Sequence derived from alignment at scaffold_263:124857..127415- (Clytia hemisphaerica)
ATTTTTTGTTATAGAGAAATTTTAAACATATAAAAATTATCATGCATGAC
TTCATGGAAAAGTATCTAACACATAAAAACATTGACAATTAACACAAACA
CGAGATTTACACATTATACACATACACAACTAACAGATAAGTAGTTTTCA
TAGATTTAAGTTTTGCATTGTTTACTGTCAACAGTTTCTAATTCCAAAAC
TTGTTCAAAAAGATTTTTATTTTCAACTCAAAAAGATGGTTGTAACATGG
GGCAAGTCTATCTTTTGATATCATCTGCTGTAAGTCTTATTTCTGTTTAG
AAGTTGAGTGAGCTGAATGATGTCCACGTCTTGTTTGTTTCACCTGAAAC
CATCCTATCAGATGTTGGGAGAAAGTTTTTGAAAAAGAAAGAATTCAATT
CAAGATTATCAGCTGTTTTTGTGGATGAAAGTCATTGCATTGAAAAATGG
TATGAAACTTTTGAAACGTTCTAAGATGAAGGGTACTATGAAGGGGTACT
TTCACCACCTCTAATGAGCAGGTCAATTCAGAAGGAATCTGTATTTTAAA
AAAATATAAAAAGTGGTGTTTTAATTTTCAGGACCAGAAGTTATTTTTTA
GAGATGATAGTCACCCAAATCCACACTAATTCATTTCTGTTAAAAGATAA
GAAAAGATCATCCTTTTGACTCCAATTATCTATTAAATTAAGAAAAACAC
TGCACTATTATTGGCCAACTTGATACTTCAGGCGTACAAACTTTCCTGAG
CAGAAACTTAAACTTTCACAGTTTTTGTCAATTTTTCCCTTTTTCCTAAA
AGTTTATGCTCACAAAAGTTTGCACGCTTAAAGTATTGTTATTTTCACCA
CAAAGGGCACCAAGAACAAAATTTTATCAATGATACCTTAAGGGAACTAA
TTTTCGCAGAACTAGTTTTCACGGGAGCTAACTATATTTCGTGTTTTGGG
GTGTCTACCGCGAAAATTAGTTCCACAAAATGGGAAATACTAGAAATCCT
TAAAAACCCCTAGGAAAATAAAAGAATTTAGGCAAAAAGTGGGTGTCTAC
CGCAAAAATTAGTCTCCTTAAGGTATTTTTTTTATTATTTGCTAATTGAG
TCTAAGTCACCATTTTAATTTTCTTACAGGGGTACATCGGACAATCCAAA
AAAGGCTGCTTTTCGTCAGTGTTACTCAAGACTTGCTGAAATTCGGTCAT
TTGTGGCTCGTAGATTACCGTTTGTTGCAATGACTGCTACTGCAACCAAG
TCTACGCGTGAATTTATTATTTCCAACCTTCAAATGATTACCCCAGAGTT
GCTAATTATGGCACCTGGAAAGTCTAACATCACTTATTACGTTAAAAAAA
CAAAAAATTTAGATTGTGATACTTTATTTGCACCATTGATCAAAAATCTA
AGAGATAATGGTTACAAAGCAGAGAGGGTCATTATCTTTTGTGACAGAAG
CAGATTAAGAGACCTATATGACTCTTTTGAAAATGAATTCTACAATTATT
ATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGACCA
GAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTATGGT
GAGAATTTTGATAGCCACCATAGCATCTTTTGAAAATGAATTCTACAATG
ATTATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACGAGA
CCAGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGGTAT
GGTGAGAATTTTGATAGCCACCATAGCATCTTTTGAAAATGAATTCTACA
ATGATTATACGTATGATGAAAGACCATTTGCGATGTTTCATCGCACAACG
AGACCAGAAATCAAGGAAAGGATAATCAAAGCCTTTCAAGACCCTGATGG
TATGGTGAGAATTTTGATAGCCACCATAGCATTTGGAATGGGGATTGATT
GCAAGGATCTACATCGAATCATTCATTTTGGGGTGCCATCAGATCTTGAT
TCATATTTCCAAGAATCTGGTAGAGCAGGAAGAGATGACGCTCAATGCTC
TGCCTTACTACTGCTTTATCCACGCTGCATTTCTCGCTATGTGAAAAAGG
ATATTAGAGATTATGTGACAAACACTCAACGTTGTAGGAGAGAAATTCAT
CTTGAGGTTTATGATTCAAAACCAAGCAAAATACAACCAAAACATACATG
TTGTGACTTTTGTCACCAAAGATGTGAGTGTGGAAATTGTGAATCACCTG
AATTTTTAGTAGATCTTCTACAATCGAGAGACGAAATCGAACTGCCAGAT
AATGAACTTATTAATGATGAAGTAGAAGAACAAGTGGAATGCCGGGAGGG
AGAATCAGAATCGGAACCAGAAATATAGAATGATGAACACTAGAACTTTA
CCACATATGATATGTTAGAGGATAAAATATATAACATTTAGTTTTTTGTA
TATTTCATTTTAGTTTGATAACAGCCAGTCAACTGTGGTCCTGGCAAATA
TATACATGGGTTGTTAGGTGTCTGTTGCATTTTGTCCATCAACTGTAGTT
TATTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055849-exon-scaffold_263-1575043694:126967..127415 | TCONS_00055849-exon-scaffold_263-1575043694:126967..127415 | Clytia hemisphaerica | exon |
| TCONS_00055849-exon-scaffold_263-1575043694:124857..126286 | TCONS_00055849-exon-scaffold_263-1575043694:124857..126286 | Clytia hemisphaerica | exon |
| TCONS_00055849-exon-scaffold_263-1510915933:126967..127415 | TCONS_00055849-exon-scaffold_263-1510915933:126967..127415 | Clytia hemisphaerica | exon |
| TCONS_00055849-exon-scaffold_263-1510915933:124857..126286 | TCONS_00055849-exon-scaffold_263-1510915933:124857..126286 | Clytia hemisphaerica | exon |
| TCONS_00055849-exon-scaffold_263-1491911889:126967..127415 | TCONS_00055849-exon-scaffold_263-1491911889:126967..127415 | Clytia hemisphaerica | exon |
| TCONS_00055849-exon-scaffold_263-1491911889:124857..126286 | TCONS_00055849-exon-scaffold_263-1491911889:124857..126286 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_263 | supercontig | scaffold_263:124857..127415 - |
Blast
BLAST of TCONS_00055849 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 5.930e-17 Identity = 51/150 (34.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query: 1165 TTRPEIKERIIKAFQDPDGMVRILIATIAFGMGIDCKDLHRIIHFGVPSDLDSYFQESGRAGRDDAQCSALLLLYPRCI--SRYVKKDIR---------------DYVTNTQRCRREIHLEVYDSKPSK-----IQPKHTCCDFCHQRCE 1548
+TR +I R ++ ++ +IATIAFGMGI+ D+ ++IH+G P D++SY+QE GRAGRD Q S +L P I +R++ +IR + ++ RCRR+I L ++ K + I CCD C R +
Sbjct: 801 STRKDIHHRFVR------DEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRSRLD 944
The following BLAST results are available for this feature:
|
