TCONS_00055880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055880
Unique NameTCONS_00055880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055880 ID=TCONS_00055880|Name=TCONS_00055880|organism=Clytia hemisphaerica|type=transcript|length=300bp
tttttgagCTCTTTTAGGGTACTTCTTTTTGGCTTCATTAGTTGAAGTGG
TATCTTCATCAAAGCTTTCTTCCTTCACATTCTCAACACCATCTTCATCC
ACAGATACTATGGTGGGTATTTgaaaatctatgttttcatcATTATCATT
CTCACCATGTTCATAAAGTTTATTCTCTTCTACAATTACATCTGAATCGA
TATCATCTGCAGGAAAAATATCACCAACAATGGGTATATCCTCACCAAAA
TCTATTTCTTCAAGCCCCAAATACTCTGTTTCTACTTCGAAAATATCCGC
Run BLAST on NCBI

protein sequence of TCONS_00055880-protein

>TCONS_00055880-protein ID=TCONS_00055880-protein|Name=TCONS_00055880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
ADIFEVETEYLGLEEIDFGEDIPIVGDIFPADDIDSDVIVEENKLYEHGE
NDNDENIDFQIPTIVSVDEDGVENVKEESFDEDTTSTNEAKKKYPKRAQK
Run BLAST on NCBI

transcript from alignment at scaffold_264:18030..18329

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055880 ID=TCONS_00055880|Name=TCONS_00055880|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at scaffold_264:18030..18329 (Clytia hemisphaerica)
GCGGATATTTTCGAAGTAGAAACAGAGTATTTGGGGCTTGAAGAAATAGA
TTTTGGTGAGGATATACCCATTGTTGGTGATATTTTTCCTGCAGATGATA
TCGATTCAGATGTAATTGTAGAAGAGAATAAACTTTATGAACATGGTGAG
AATGATAATgatgaaaacatagattttcAAATACCCACCATAGTATCTGT
GGATGAAGATGGTGTTGAGAATGTGAAGGAAGAAAGCTTTGATGAAGATA
CCACTTCAACTAATGAAGCCAAAAAGAAGTACCCTAAAAGAGctcaaaaa

Coding sequence (CDS) from alignment at scaffold_264:18030..18329

>TCONS_00055880 ID=TCONS_00055880|Name=TCONS_00055880|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_264:18030..18329 (Clytia hemisphaerica)
GCGGATATTTTCGAAGTAGAAACAGAGTATTTGGGGCTTGAAGAAATAGA
TTTTGGTGAGGATATACCCATTGTTGGTGATATTTTTCCTGCAGATGATA
TCGATTCAGATGTAATTGTAGAAGAGAATAAACTTTATGAACATGGTGAG
AATGATAATgatgaaaacatagattttcAAATACCCACCATAGTATCTGT
GGATGAAGATGGTGTTGAGAATGTGAAGGAAGAAAGCTTTGATGAAGATA
CCACTTCAACTAATGAAGCCAAAAAGAAGTACCCTAAAAGAGctcaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035187XLOC_035187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055880-exon-scaffold_264-1491911889:18030..18329TCONS_00055880-exon-scaffold_264-1491911889:18030..18329Clytia hemisphaericaexon
TCONS_00055880-exon-scaffold_264-1510915933:18030..18329TCONS_00055880-exon-scaffold_264-1510915933:18030..18329Clytia hemisphaericaexon
TCONS_00055880-exon-scaffold_264-1575043694:18030..18329TCONS_00055880-exon-scaffold_264-1575043694:18030..18329Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055880-proteinTCONS_00055880-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:18030..18329 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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