TCONS_00055881 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055881
Unique NameTCONS_00055881
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055881 ID=TCONS_00055881|Name=TCONS_00055881|organism=Clytia hemisphaerica|type=transcript|length=275bp
AAATGTATGCTGTTTGTTATGATTTCTCGTTTGCCGGCAAACGTTTCGAA
CGGCAAAATGTCCGCACCATGACCGCACTGAATACCGCACCTATTCAAAT
GGTGCTCTTTAGTGACCGATCGAGTGCGTTTGAATGGAtttttagaaaag
atttttcgatgatttttttggtatcaTTTTACCGCACGGTAAATCGTTTC
GCCGCTTTTTTGCCGCACATTTTATCGATCTGtccgcaccaagaccggtc
tcatttttaatgtactccaaatcgc
Run BLAST on NCBI

transcript from alignment at scaffold_264:19342..19616

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055881 ID=TCONS_00055881|Name=TCONS_00055881|organism=Clytia hemisphaerica|type=transcript|length=275bp|location=Sequence derived from alignment at scaffold_264:19342..19616 (Clytia hemisphaerica)
gcgatttggagtacattaaaaatgagaccggtcttggtgcggaCAGATCG
ATAAAATGTGCGGCAAAAAAGCGGCGAAACGATTTACCGTGCGGTAAAAt
gataccaaaaaaatcatcgaaaaatcttttctaaaaaTCCATTCAAACGC
ACTCGATCGGTCACTAAAGAGCACCATTTGAATAGGTGCGGTATTCAGTG
CGGTCATGGTGCGGACATTTTGCCGTTCGAAACGTTTGCCGGCAAACGAG
AAATCATAACAAACAGCATACATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035188XLOC_035188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055881-exon-scaffold_264-1491911889:19342..19616TCONS_00055881-exon-scaffold_264-1491911889:19342..19616Clytia hemisphaericaexon
TCONS_00055881-exon-scaffold_264-1510915933:19342..19616TCONS_00055881-exon-scaffold_264-1510915933:19342..19616Clytia hemisphaericaexon
TCONS_00055881-exon-scaffold_264-1575043694:19342..19616TCONS_00055881-exon-scaffold_264-1575043694:19342..19616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_264supercontigscaffold_264:19342..19616 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.588765	0.624085	2.5991	5.53516	4.35726	3.32556	7.7448	4.75955	3.51651	5.37697	5.82192	9.58714	1.97262	5.04391	2.41271	2.84462	3.1671	6.21137	3.55852	6.0481	3.34907	1.70506	0	1.48003	6.79974	5.9885	2.59217	0.36919	1.3221	2.60555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055881 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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