TCONS_00055914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055914
Unique NameTCONS_00055914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4543

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055914 ID=TCONS_00055914|Name=TCONS_00055914|organism=Clytia hemisphaerica|type=transcript|length=4543bp
TTTAGATTCAAAATGgtacaaagaaaataaatcaaaatatattggAATAT
GTGGTTGAAGCAAGCTACTCATTTTCTGGTATTTCTGCAAATCTTTGTCA
ATATCATCTACGCATGCCCAGCAGATTGCACGTGCTATTTGACCTCAGTT
ATCTGTCAGTATAACTTTCTAAAGAAAATACCGAATGGGATTCCAGAATC
GACGACCAAGTTATATCTTGATGGAAACCAAATAGAGAGAGTTGAAAGAG
CTGAACTATCCAATTTAAAAGATTTAGAACTGTTGAGTATTGGGAGTAAT
ACCATAAGTTTTATTGAGGATGATGCTTTTCATAACTTGACAAAATTGAC
CAGTCTACATATCAACGACAATAAACTGACAAGaatcaaaagaacttttt
tcaGCAACTCGCCGTTATTAAGGCATGTTCGAGCTGATCGCTTATCACCT
AATGCTCCTTTAGAAATTGATGATCACGCTTTTGAAAATCAACAAGATCT
AGGTGAATTAAATCTAGCATCAAACAACATGGTTCGAATCTCAAATAACA
CTTTTGCTGGACTCTCAAACTTAAAGCATTTGGATATCTCCGATAACGAC
ATCCAAGTTTATTCCTCGCACGCGTTTACACCTTTAACAAGCAGTCCAAC
AATTGAAATTGACGATGGTATTAAATGTTGTTGTCAAACCAAGGCTGCTT
TCACCGCATTCGGGATTTCTCAAACGTGTATTAATCCAGAAACAAACCAA
CAAGGAGATATTGCATCGTCGCCATGCACTGATACAGGAGTATGTGGAAG
TTTTAGAGAATCGACGAGTGATCTTTGGCCCCCGATGCCGCCAGAACCTA
CGACATCGGTAACATTTGCATCaccatcatcatcgtcatcatctTCATCA
GTAGTTGCAACAAATATTGAAAGTTCATCATCACCAAAATTctcatcttc
atcatcatcgtcaACAAGCAGTATTCTTCACAATTCCTCACCATCACCAT
CGAGTAACATTGTGAGCTCATCAATGAGTGAATCGAAATCAGTTGAGATA
CAGGTGTTTCAGACATTGCTGACAGACTCGGTTTCTGATCACGTTTACAC
AAATCACATAGATTCAGCATCATCTTCACCAGACATGTCATCAGTAATTC
CAGCAAATTCAATTGAACCAACTCCCGTCTCAAAACTGAGCGTACCGTCT
ACTTCTATCACAAACTCTTCAATCATTCCTCAATCGTCAGCAGCTCCAGT
GATCTCTTCTGAATCTAATGATCATACAACAGAGATACTAAATCACCAAT
ATCCTTCAACTGTTAAACCAAAGCTCGAAAGCAGTATGTCAATGCAAGAG
CCTGACTATCAGACATCTTCCAAACACCCTCATGCAATGCCTTCAATCAG
CAATGATGTTGACCAAACCACCCAAGCAGGGACGCTTCAACCTTCCTCTA
ACTATCCTTTGGAAGTATCTTCAATAATTATGTTACATACCATATCGCCA
TCGCATTCAGTACCAACACTTAACGGAACATGCAGTGTCTCGACGTGTAA
AGCAGGTTGTGAATTCTCACAACAACATTGCCAATGCTTCGAAAAAGGTA
CTTCGAAAGCCTGTCTTATCACCAGTACGCTAGATTCTCAAACAGGAGAT
GAAAACTCAATGGCAGATTGGCAGATGGCAATTATCATTGGATCGTGTGT
CGTTGTCTTGTGTTTCATCGTCTTCTTTATCTATTTCAAGAAGAAACAAA
GTCGTGAACGACAATTTAACTTGAACACGTCCCGACAAAATATGGCGATG
AATGACAGTCCTCAAGGTCGTGACAATCGTATGTTTATTATTGAAGAGAC
AAACGAGGCTGGACCAGTTAATCGACCAATTGCAGAAATGTATTAATCTC
AGCGAGAAGCGGCGTTAGGACATCAATAACAGTGAATGTTCTCCAATGAA
CAACAACATGCCACCACTAAAGACTTATAtaacgagaaaaatatttgatt
gcTAGTGAGAGCTATTCGATGTTTTGTATTATAATTTCATTACTTATTAT
GAGTTTTTCAGGGTTTTATATCTGGTACTGGAAGAGGGTCATGCAAATAA
AATAAAGTACAGGGGCGAGTTACTGGTAAGGATcccgttttttcaaaatt
tcatttaaatggGTCCAAATTTAGTCTGTTACTGACGGTATGTAATTCTT
AGGATTTCGAAATTGACTTGATTCTTGACCGTCAAATTTTGTTTCCCAAA
GGAGCTCTAGAAAAAAAGATCAATATTAAGCCAATACatgtctttttata
agcatacaaaaatccaaagaCTGACTCGGAGATGCTTAAATTGACAGATT
GACAAGGCTGAAAAAAGCTTGATGGATgctatatttcaagcaaaatttta
gggaaTTTCCAAAAATCCGTAAAATCCCAGAAAAAAACAGCGAAAATCTA
GGCTCAGGTAATGCTTAACAATTGCTATATCTGAGCCTCGCTATGCTTAT
AAGTacaatgcttataataaaacatgtatcattttgtatttgtaagcatt
aatattttatcttttgttcTAACCGTATTTGTACAGATTTCTAATGCACT
GTTATATAAAAGTTTGTATAAAATTAACTAAAAGTCTACATTAAAAAGTT
CAAAGTGTATTCACATATTATACAATTCATAAAACCGAATGATCATTCAA
ACGTACTTTACTCGAGTCTACTCAACTTGAATCTCCATTGCTCGAATGTC
TCCACCGTAGCTTGAATGGTTTTTAATCCATTGGGATCTAGTTCCCTTTA
ATTTAACATTTAGCATTTGACTTTCAGAGAATCGCCTGTTTGACCATAGA
AATTGACCAAAgttttgaaagatcttctatggaAGACAACTTCTGCTGGT
AGAATGGTCTCGTTGGTGACATCACTTTTCGGGAGAATTTTAGGCTATCA
GGTTTCAACCCGATCAAACTTTATATAATTTATCCAAATAATTCAAAGTC
AATGAAATTAACTTGCTGGTGTTGAATGGACCGATTTCTTATGCATTTGA
AGGTTAATATcaaatttaaagaatttctcGCAGATGTCACAGAAGCAAAG
TGAACTCTTTTTACCAAACAACAGTTGGTCATAAAACATTCTATTCCCAT
TTTTAGTTCTGTCTTTACTGTCAATATTCATAATTTCAGAGTTATGTCTT
GTATTCAGTTTTGAGATCTGAGACTTTGAGTTCTCCAAGTTTAAAATCGA
AATCACATTTGAATCTTCTGTTCTATCCATGTTATGGACTAAAATGATAT
GTGATTTCAAGTTTGATAGATATCGAAAAGACATGCCACAGGAGGAGCAT
TTATATCCATTAGGAACAGGTTCTTCGTCTATTGCCCACAGACCATTGCA
AGACTGAAATCGTTTATTCCTTGGAGCTCCATATCTAGTATGTtgctgtt
ttttgtttttgatcttCTTGAAGCTCAGACCGATTTTTTCGTgcgttttc
tttgattttgctgCTTGTTTCAACAAAGAGGCTTCTTTTAAATGtctcat
tttgattttgaaatcttCGGTATCtgttttatttggtttattcATATTGG
AGTCGTGCGTTACTTTCTTTATAGGGCTTTGGAACAGTTGTCTTTTTACT
GTTATTGGGTCTATTGCTTGTCTGGTTACCGTTAGTTCGTTAGATTGATT
TTCACTTCTAGTGCTCGGTGAAGACTCTGAAGATGTTGGAGGAGTTTCTT
TCTTCTTCGTCGATACCCTTGGTGGAAAATTAGACGCAAGATTTCTTGAT
TTGGGAGATTTACATTTTGTCGTTTTCTGGTGTTTTAAAGAAGTTGATAA
GTTATGTTTCGGAGAGactgttttatttttagtttgactTGCATCGAGTA
TGTTTTTAAACCCGTTTGATGATCCGATAAAGCTTGGACTTGGTACACAT
GTGCAATTTGTATCAATTGCTCGGGAGAGTAAAACATTGCTGGTAGTTTG
GGGATTGGCTTCAATTGAtagtttttcaaaacttttatgtAAAACGTTTA
TGTTACTTTCGTCCAAAGTAACATTGGGGGATTCAACATTAATCAACAAT
TTTTGAGTAACTTCTTCGTCGAAAGTTTTATCCAATAACTTTAGGCAATG
ATCTTTagaattttgatcaaaaattttcagaacatcTTCATGAACATTTG
AAAGCGGTGTCCTGGTGCAATCATCGTCGCAATCTTTATCAAAAAATCTG
TCACTTCTCTTAAACATATCTTCATTTTTGTTCATCAACGAATGTTCATC
TTTAGTCAGCAATTTTCGAACATCTTCGTCTTCATTTGTATCCAAGAAAA
TATCGACGTCAGATTCAAAACCATCATCTTTGGAATGATCAACATCATTT
CTGATTTCATTGAAGATGAATGCTTGGTGATCCTGACTCATGCTCAGGCC
ATCAACTTTAACGTTTTTGTTACCGACTGCTGATTCGAGTGAACGATTTG
ATTCATTTTCCGAATCTTCagtcttcatctttattcatattct
Run BLAST on NCBI

protein sequence of TCONS_00055914-protein

>TCONS_00055914-protein ID=TCONS_00055914-protein|Name=TCONS_00055914-protein|organism=Clytia hemisphaerica|type=polypeptide|length=615bp
MWLKQATHFLVFLQIFVNIIYACPADCTCYLTSVICQYNFLKKIPNGIPE
STTKLYLDGNQIERVERAELSNLKDLELLSIGSNTISFIEDDAFHNLTKL
TSLHINDNKLTRIKRTFFSNSPLLRHVRADRLSPNAPLEIDDHAFENQQD
LGELNLASNNMVRISNNTFAGLSNLKHLDISDNDIQVYSSHAFTPLTSSP
TIEIDDGIKCCCQTKAAFTAFGISQTCINPETNQQGDIASSPCTDTGVCG
SFRESTSDLWPPMPPEPTTSVTFASPSSSSSSSSVVATNIESSSSPKFSS
SSSSSTSSILHNSSPSPSSNIVSSSMSESKSVEIQVFQTLLTDSVSDHVY
TNHIDSASSSPDMSSVIPANSIEPTPVSKLSVPSTSITNSSIIPQSSAAP
VISSESNDHTTEILNHQYPSTVKPKLESSMSMQEPDYQTSSKHPHAMPSI
SNDVDQTTQAGTLQPSSNYPLEVSSIIMLHTISPSHSVPTLNGTCSVSTC
KAGCEFSQQHCQCFEKGTSKACLITSTLDSQTGDENSMADWQMAIIIGSC
VVVLCFIVFFIYFKKKQSRERQFNLNTSRQNMAMNDSPQGRDNRMFIIEE
TNEAGPVNRPIAEMY
Run BLAST on NCBI

transcript from alignment at scaffold_266:32202..37116+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055914 ID=TCONS_00055914|Name=TCONS_00055914|organism=Clytia hemisphaerica|type=transcript|length=4915bp|location=Sequence derived from alignment at scaffold_266:32202..37116+ (Clytia hemisphaerica)
TTTAGATTCAAAATGgtacaaagaaaataaatcaaaatatattggAATAT
GTGGTTGAAGCAAGCTACTCATTTTCTGGTATTTCTGCAAATCTTTGTCA
ATATCATCTACGCATGCCCAGCAGATTGCACGTGCTATTTGACCTCAGTT
ATCTGTCAGTATAACTTTCTAAAGAAAATACCGAATGGGATTCCAGAATC
GACGACCAAGTTATATCTTGATGGAAACCAAATAGAGAGAGTTGAAAGAG
CTGAACTATCCAATTTAAAAGATTTAGAACTGTTGAGTATTGGGAGTAAT
ACCATAAGTTTTATTGAGGATGATGCTTTTCATAACTTGACAAAATTGAC
CAGTCTACATATCAACGACAATAAACTGACAAGaatcaaaagaacttttt
tcaGCAACTCGCCGTTATTAAGGCATGTTCGAGCTGATCGCTTATCACCT
AATGCTCCTTTAGAAATTGATGATCACGCTTTTGAAAATCAACAAGATCT
AGGTGAATTAAATCTAGCATCAAACAACATGGTTCGAATCTCAAATAACA
CTTTTGCTGGACTCTCAAACTTAAAGCATTTGGATATCTCCGATAACGAC
ATCCAAGTTTATTCCTCGCACGCGTTTACACCTTTAACAAGCAGTCCAAC
AATTGAAATTGACGATGGTATTAAATGTTGTTGTCAAACCAAGGCTGCTT
TCACCGCATTCGGGATTTCTCAAACGTGTATTAATCCAGAAACAAACCAA
CAAGGAGATATTGCATCGTCGCCATGCACTGATACAGGAGTATGTGGAAG
TTTTAGAGAATCGACGAGTGATCTTTGGCCCCCGATGCCGCCAGAACCTA
CGACATCGGTAACATTTGCATCaccatcatcatcgtcatcatctTCATCA
GTAGTTGCAACAAATATTGAAAGTTCATCATCACCAAAATTctcatcttc
atcatcatcgtcaACAAGCAGTATTCTTCACAATTCCTCACCATCACCAT
CGAGTAACATTGTGAGCTCATCAATGAGTGAATCGAAATCAGTTGAGATA
CAGGTGTTTCAGACATTGCTGACAGACTCGGTTTCTGATCACGTTTACAC
AAATCACATAGATTCAGCATCATCTTCACCAGGTACAATAATGCATTCGA
TCCCTTCATCCCACTTAACACAAACAGTACTTGCAAATAGTGATTTATCA
GTTGTGAGCTCTAATATGATTTTAAGCACTTCAGTATCTTCATCGAATAG
ACTTCACAAATCAAAATCTAATTCGGTATCTGAGAGAACAACACTATCAA
GCACAAATGCATTTCACACTGAAACACTGAGCACTATGACAAAATCCTTA
CTGCACGAATCAGCCATATCACCAAGCTCAAATTACGAAATAAGCACAAA
TGTACTTAGCACCGAAAGCACGATGGCACAATCTTCAGAAATCTCAATTT
ATTCCCCGTCAATGTCCGATTCATACAATCTCCGGCCTGTCTCTTCCTCA
CTAGACATGTCATCAGTAATTCCAGCAAATTCAATTGAACCAACTCCCGT
CTCAAAACTGAGCGTACCGTCTACTTCTATCACAAACTCTTCAATCATTC
CTCAATCGTCAGCAGCTCCAGTGATCTCTTCTGAATCTAATGATCATACA
ACAGAGATACTAAATCACCAATATCCTTCAACTGTTAAACCAAAGCTCGA
AAGCAGTATGTCAATGCAAGAGCCTGACTATCAGACATCTTCCAAACACC
CTCATGCAATGCCTTCAATCAGCAATGATGTTGACCAAACCACCCAAGCA
GGGACGCTTCAACCTTCCTCTAACTATCCTTTGGAAGTATCTTCAATAAT
TATGTTACATACCATATCGCCATCGCATTCAGTACCAACACTTAACGGAA
CATGCAGTGTCTCGACGTGTAAAGCAGGTTGTGAATTCTCACAACAACAT
TGCCAATGCTTCGAAAAAGGTACTTCGAAAGCCTGTCTTATCACCAGTAC
GCTAGATTCTCAAACAGGAGATGAAAACTCAATGGCAGATTGGCAGATGG
CAATTATCATTGGATCGTGTGTCGTTGTCTTGTGTTTCATCGTCTTCTTT
ATCTATTTCAAGAAGAAACAAAGTCGTGAACGACAATTTAACTTGAACAC
GTCCCGACAAAATATGGCGATGAATGACAGTCCTCAAGGTCGTGACAATC
GTATGTTTATTATTGAAGAGACAAACGAGGCTGGACCAGTTAATCGACCA
ATTGCAGAAATGTATTAATCTCAGCGAGAAGCGGCGTTAGGACATCAATA
ACAGTGAATGTTCTCCAATGAACAACAACATGCCACCACTAAAGACTTAT
AtaacgagaaaaatatttgattgcTAGTGAGAGCTATTCGATGTTTTGTA
TTATAATTTCATTACTTATTATGAGTTTTTCAGGGTTTTATATCTGGTAC
TGGAAGAGGGTCATGCAAATAAAATAAAGTACAGGGGCGAGTTACTGGTA
AGGATcccgttttttcaaaatttcatttaaatggGTCCAAATTTAGTCTG
TTACTGACGGTATGTAATTCTTAGGATTTCGAAATTGACTTGATTCTTGA
CCGTCAAATTTTGTTTCCCAAAGGAGCTCTAGAAAAAAAGATCAATATTA
AGCCAATACatgtctttttataagcatacaaaaatccaaagaCTGACTCG
GAGATGCTTAAATTGACAGATTGACAAGGCTGAAAAAAGCTTGATGGATg
ctatatttcaagcaaaattttagggaaTTTCCAAAAATCCGTAAAATCCC
AGAAAAAAACAGCGAAAATCTAGGCTCAGGTAATGCTTAACAATTGCTAT
ATCTGAGCCTCGCTATGCTTATAAGTacaatgcttataataaaacatgta
tcattttgtatttgtaagcattaatattttatcttttgttcTAACCGTAT
TTGTACAGATTTCTAATGCACTGTTATATAAAAGTTTGTATAAAATTAAC
TAAAAGTCTACATTAAAAAGTTCAAAGTGTATTCACATATTATACAATTC
ATAAAACCGAATGATCATTCAAACGTACTTTACTCGAGTCTACTCAACTT
GAATCTCCATTGCTCGAATGTCTCCACCGTAGCTTGAATGGTTTTTAATC
CATTGGGATCTAGTTCCCTTTAATTTAACATTTAGCATTTGACTTTCAGA
GAATCGCCTGTTTGACCATAGAAATTGACCAAAgttttgaaagatcttct
atggaAGACAACTTCTGCTGGTAGAATGGTCTCGTTGGTGACATCACTTT
TCGGGAGAATTTTAGGCTATCAGGTTTCAACCCGATCAAACTTTATATAA
TTTATCCAAATAATTCAAAGTCAATGAAATTAACTTGCTGGTGTTGAATG
GACCGATTTCTTATGCATTTGAAGGTTAATATcaaatttaaagaatttct
cGCAGATGTCACAGAAGCAAAGTGAACTCTTTTTACCAAACAACAGTTGG
TCATAAAACATTCTATTCCCATTTTTAGTTCTGTCTTTACTGTCAATATT
CATAATTTCAGAGTTATGTCTTGTATTCAGTTTTGAGATCTGAGACTTTG
AGTTCTCCAAGTTTAAAATCGAAATCACATTTGAATCTTCTGTTCTATCC
ATGTTATGGACTAAAATGATATGTGATTTCAAGTTTGATAGATATCGAAA
AGACATGCCACAGGAGGAGCATTTATATCCATTAGGAACAGGTTCTTCGT
CTATTGCCCACAGACCATTGCAAGACTGAAATCGTTTATTCCTTGGAGCT
CCATATCTAGTATGTtgctgttttttgtttttgatcttCTTGAAGCTCAG
ACCGATTTTTTCGTgcgttttctttgattttgctgCTTGTTTCAACAAAG
AGGCTTCTTTTAAATGtctcattttgattttgaaatcttCGGTATCtgtt
ttatttggtttattcATATTGGAGTCGTGCGTTACTTTCTTTATAGGGCT
TTGGAACAGTTGTCTTTTTACTGTTATTGGGTCTATTGCTTGTCTGGTTA
CCGTTAGTTCGTTAGATTGATTTTCACTTCTAGTGCTCGGTGAAGACTCT
GAAGATGTTGGAGGAGTTTCTTTCTTCTTCGTCGATACCCTTGGTGGAAA
ATTAGACGCAAGATTTCTTGATTTGGGAGATTTACATTTTGTCGTTTTCT
GGTGTTTTAAAGAAGTTGATAAGTTATGTTTCGGAGAGactgttttattt
ttagtttgactTGCATCGAGTATGTTTTTAAACCCGTTTGATGATCCGAT
AAAGCTTGGACTTGGTACACATGTGCAATTTGTATCAATTGCTCGGGAGA
GTAAAACATTGCTGGTAGTTTGGGGATTGGCTTCAATTGAtagtttttca
aaacttttatgtAAAACGTTTATGTTACTTTCGTCCAAAGTAACATTGGG
GGATTCAACATTAATCAACAATTTTTGAGTAACTTCTTCGTCGAAAGTTT
TATCCAATAACTTTAGGCAATGATCTTTagaattttgatcaaaaattttc
agaacatcTTCATGAACATTTGAAAGCGGTGTCCTGGTGCAATCATCGTC
GCAATCTTTATCAAAAAATCTGTCACTTCTCTTAAACATATCTTCATTTT
TGTTCATCAACGAATGTTCATCTTTAGTCAGCAATTTTCGAACATCTTCG
TCTTCATTTGTATCCAAGAAAATATCGACGTCAGATTCAAAACCATCATC
TTTGGAATGATCAACATCATTTCTGATTTCATTGAAGATGAATGCTTGGT
GATCCTGACTCATGCTCAGGCCATCAACTTTAACGTTTTTGTTACCGACT
GCTGATTCGAGTGAACGATTTGATTCATTTTCCGAATCTTCagtcttcat
ctttattcatattct

Coding sequence (CDS) from alignment at scaffold_266:32202..37116+

>TCONS_00055914 ID=TCONS_00055914|Name=TCONS_00055914|organism=Clytia hemisphaerica|type=CDS|length=3696bp|location=Sequence derived from alignment at scaffold_266:32202..37116+ (Clytia hemisphaerica)
ATGTGGTTGAAGCAAGCTACTCATTTTCTGGTATTTCTGCAAATCTTTGT
CAATATCATCTACGCATGCCCAGCAGATTGCACGTGCTATTTGACCTCAG
TTATCTGTCAGTATAACTTTCTAAAGAAAATACCGAATGGGATTCCAGAA
TCGACGACCAAGTTATATCTTGATGGAAACCAAATAGAGAGAGTTGAAAG
AGCTGAACTATCCAATTTAAAAGATTTAGAACTGTTGAGTATTGGGAGTA
ATACCATAAGTTTTATTGAGGATGATGCTTTTCATAACTTGACAAAATTG
ACCAGTCTACATATCAACGACAATAAACTGACAAGaatcaaaagaacttt
tttcaGCAACTCGCCGTTATTAAGGCATGTTCGAGCTGATCGCTTATCAC
CTAATGCTCCTTTAGAAATTGATGATCACGCTTTTGAAAATCAACAAGAT
CTAGGTGAATTAAATCTAGCATCAAACAACATGGTTCGAATCTCAAATAA
CACTTTTGCTGGACTCTCAAACTTAAAGCATTTGGATATCTCCGATAACG
ACATCCAAGTTTATTCCTCGCACGCGTTTACACCTTTAACAAGCAGTCCA
ACAATTGAAATTGACGATGGTATTAAATGTTGTTGTCAAACCAAGGCTGC
TTTCACCGCATTCGGGATTTCTCAAACGTGTATTAATCCAGAAACAAACC
AACAAGGAGATATTGCATCGTCGCCATGCACTGATACAGGAGTATGTGGA
AGTTTTAGAGAATCGACGAGTGATCTTTGGCCCCCGATGCCGCCAGAACC
TACGACATCGGTAACATTTGCATCaccatcatcatcgtcatcatctTCAT
CAGTAGTTGCAACAAATATTGAAAGTTCATCATCACCAAAATTctcatct
tcatcatcatcgtcaACAAGCAGTATTCTTCACAATTCCTCACCATCACC
ATCGAGTAACATTGTGAGCTCATCAATGAGTGAATCGAAATCAGTTGAGA
TACAGGTGTTTCAGACATTGCTGACAGACTCGGTTTCTGATCACGTTTAC
ACAAATCACATAGATTCAGCATCATCTTCACCAGACATGTCATCAGTAAT
TCCAGCAAATTCAATTGAACCAACTCCCGTCTCAAAACTGAGCGTACCGT
CTACTTCTATCACAAACTCTTCAATCATTCCTCAATCGTCAGCAGCTCCA
GTGATCTCTTCTGAATCTAATGATCATACAACAGAGATACTAAATCACCA
ATATCCTTCAACTGTTAAACCAAAGCTCGAAAGCAGTATGTCAATGCAAG
AGCCTGACTATCAGACATCTTCCAAACACCCTCATGCAATGCCTTCAATC
AGCAATGATGTTGACCAAACCACCCAAGCAGGGACGCTTCAACCTTCCTC
TAACTATCCTTTGGAAGTATCTTCAATAATTATGTTACATACCATATCGC
CATCGCATTCAGTACCAACACTTAACGGAACATGCAGTGTCTCGACGTGT
AAAGCAGGTTGTGAATTCTCACAACAACATTGCCAATGCTTCGAAAAAGG
TACTTCGAAAGCCTGTCTTATCACCAGTACGCTAGATTCTCAAACAGGAG
ATGAAAACTCAATGGCAGATTGGCAGATGGCAATTATCATTGGATCGTGT
GTCGTTGTCTTGTGTTTCATCGTCTTCTTTATCTATTTCAAGAAGAAACA
AAGTCGTGAACGACAATTTAACTTGAACACGTCCCGACAAAATATGGCGA
TGAATGACAGTCCTCAAGGTCGTGACAATCGTATGTTTATTATTGAAGAG
ACAAACGAGGCTGGACCAGTTAATCGACCAATTGCAGAAATGTATTAAAT
GTGGTTGAAGCAAGCTACTCATTTTCTGGTATTTCTGCAAATCTTTGTCA
ATATCATCTACGCATGCCCAGCAGATTGCACGTGCTATTTGACCTCAGTT
ATCTGTCAGTATAACTTTCTAAAGAAAATACCGAATGGGATTCCAGAATC
GACGACCAAGTTATATCTTGATGGAAACCAAATAGAGAGAGTTGAAAGAG
CTGAACTATCCAATTTAAAAGATTTAGAACTGTTGAGTATTGGGAGTAAT
ACCATAAGTTTTATTGAGGATGATGCTTTTCATAACTTGACAAAATTGAC
CAGTCTACATATCAACGACAATAAACTGACAAGaatcaaaagaacttttt
tcaGCAACTCGCCGTTATTAAGGCATGTTCGAGCTGATCGCTTATCACCT
AATGCTCCTTTAGAAATTGATGATCACGCTTTTGAAAATCAACAAGATCT
AGGTGAATTAAATCTAGCATCAAACAACATGGTTCGAATCTCAAATAACA
CTTTTGCTGGACTCTCAAACTTAAAGCATTTGGATATCTCCGATAACGAC
ATCCAAGTTTATTCCTCGCACGCGTTTACACCTTTAACAAGCAGTCCAAC
AATTGAAATTGACGATGGTATTAAATGTTGTTGTCAAACCAAGGCTGCTT
TCACCGCATTCGGGATTTCTCAAACGTGTATTAATCCAGAAACAAACCAA
CAAGGAGATATTGCATCGTCGCCATGCACTGATACAGGAGTATGTGGAAG
TTTTAGAGAATCGACGAGTGATCTTTGGCCCCCGATGCCGCCAGAACCTA
CGACATCGGTAACATTTGCATCaccatcatcatcgtcatcatctTCATCA
GTAGTTGCAACAAATATTGAAAGTTCATCATCACCAAAATTctcatcttc
atcatcatcgtcaACAAGCAGTATTCTTCACAATTCCTCACCATCACCAT
CGAGTAACATTGTGAGCTCATCAATGAGTGAATCGAAATCAGTTGAGATA
CAGGTGTTTCAGACATTGCTGACAGACTCGGTTTCTGATCACGTTTACAC
AAATCACATAGATTCAGCATCATCTTCACCAGACATGTCATCAGTAATTC
CAGCAAATTCAATTGAACCAACTCCCGTCTCAAAACTGAGCGTACCGTCT
ACTTCTATCACAAACTCTTCAATCATTCCTCAATCGTCAGCAGCTCCAGT
GATCTCTTCTGAATCTAATGATCATACAACAGAGATACTAAATCACCAAT
ATCCTTCAACTGTTAAACCAAAGCTCGAAAGCAGTATGTCAATGCAAGAG
CCTGACTATCAGACATCTTCCAAACACCCTCATGCAATGCCTTCAATCAG
CAATGATGTTGACCAAACCACCCAAGCAGGGACGCTTCAACCTTCCTCTA
ACTATCCTTTGGAAGTATCTTCAATAATTATGTTACATACCATATCGCCA
TCGCATTCAGTACCAACACTTAACGGAACATGCAGTGTCTCGACGTGTAA
AGCAGGTTGTGAATTCTCACAACAACATTGCCAATGCTTCGAAAAAGGTA
CTTCGAAAGCCTGTCTTATCACCAGTACGCTAGATTCTCAAACAGGAGAT
GAAAACTCAATGGCAGATTGGCAGATGGCAATTATCATTGGATCGTGTGT
CGTTGTCTTGTGTTTCATCGTCTTCTTTATCTATTTCAAGAAGAAACAAA
GTCGTGAACGACAATTTAACTTGAACACGTCCCGACAAAATATGGCGATG
AATGACAGTCCTCAAGGTCGTGACAATCGTATGTTTATTATTGAAGAGAC
AAACGAGGCTGGACCAGTTAATCGACCAATTGCAGAAATGTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035210XLOC_035210Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055914-proteinTCONS_00055914-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055914-exon-scaffold_266-1491911889:32202..33333TCONS_00055914-exon-scaffold_266-1491911889:32202..33333Clytia hemisphaericaexon
TCONS_00055914-exon-scaffold_266-1510915933:32202..33333TCONS_00055914-exon-scaffold_266-1510915933:32202..33333Clytia hemisphaericaexon
TCONS_00055914-exon-scaffold_266-1575043694:32202..33333TCONS_00055914-exon-scaffold_266-1575043694:32202..33333Clytia hemisphaericaexon
TCONS_00055914-exon-scaffold_266-1491911889:33706..37116TCONS_00055914-exon-scaffold_266-1491911889:33706..37116Clytia hemisphaericaexon
TCONS_00055914-exon-scaffold_266-1510915933:33706..37116TCONS_00055914-exon-scaffold_266-1510915933:33706..37116Clytia hemisphaericaexon
TCONS_00055914-exon-scaffold_266-1575043694:33706..37116TCONS_00055914-exon-scaffold_266-1575043694:33706..37116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:32202..37116 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.00872329	0	0.159516	0.734636	0.730016	0.105352	0.747039	1.13316	1.05302	0.356945	0.54666	1.81621	3.66816	2.58732	3.89264	0.462118	0	0.47239	0.642899	1.50307	1.18662	0.79694	0.198651	0.227143	0.175881
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000372LRRNT
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00055914 vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 6.897e-21
Identity = 59/164 (35.98%), Postives = 88/164 (53.66%), Query Frame = 1 
Query:  112 ACPADCTCYLTSVICQYNFLKKIPNGIPESTTKLYLDGNQIERVERAELSNLKDLELLSIGSNTISFIEDDAFHNLTKLTSLHINDNKLTRIKRTFFSNSPLLRHVRADRLSPNAPLEIDDHAFENQQDLGELNLASNNMVRISNNTFAGLSNLKHLDISDNDI 603
            ACP  CTC   SV C    L+ +P GIP +  +L LD N I R+ + + + LK+L +L +  N +S IE  AF +L +L  L +N NKL  +    F ++P L   R D LS N    I   AF    D+  L L +N++  I +  F  L +L+ L +++N+I
Sbjct:   33 ACPTKCTCSAASVDCHGLGLRAVPRGIPRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLPELLFQSTPKL--TRLD-LSENQIQGIPRKAFRGITDVKNLQLDNNHISCIEDGAFRALRDLEILTLNNNNI 193
The following BLAST results are available for this feature:
BLAST of TCONS_00055914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT36.897e-2135.98Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE... [more]
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