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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055918 ID=TCONS_00055918|Name=TCONS_00055918|organism=Clytia hemisphaerica|type=transcript|length=2036bp
ATGTAAATGACGTCGTTATTTTTTGTGAATAGATTTCTCATCTGTGACAA
AAAGATTAAATATAAGTCCAGCTGTGAGTACAGAGTCATATTTTCATGTT
TATGTAATGTCAATTATTTTATTAACATCAAGACAGATTTTATAACTGaa
tggaatattttttttgaacatCAGGACGAAGTTTCAACAGCATGAAATGT
CAATACAAAGTTTCTCGTGAGATAAAATGCTAGTTTGATGTTGTGAGATA
TATTGTTGgggtttgtttttctctttcgtAACAAGATGAACCAGATAGAA
AATCAAGAGGATTGCTTTAAAGTTGCTTTAAAAGAactgaatgaaaacat
tgatACCCGTTCTCTGGATATCGAAGCCATCCGAGATCGTATCAAACTTC
GTCCCGATATTCTGATTAACCGTGACGATGATGAATTTCTCGTACGATTT
CTTCGGGCGCGCAAATACAACAAAGATAAAGCTTTCGAGCTGCTTTGTAA
TTATTGTCAGTTCAGACGGAAAcatcaaatgtttttcaaatcgCTGAAAG
TGTCATGTTTACGACCTGTATTTGAAGATGGACTACCGATGGTATCGCCT
GTAAGGGACCAGTTAGGAAGGAGtgttattttcttgttttctggCAACTG
GAATACTTCTTTGTATACTTTTGAAGACATTCTAAGAGCGTTATTACNGA
CCAGTTAGGAAGGAGtgttattttcttgttttctggCAACTGGAATACTT
CTTTGTATACTTTTGAAGACATTCTAAGAGCGTTATTACTGACTGTTGAA
TATTTGATCGAAAGCGAAAGGACACAAATGTTTGGTGTAACTCTAGTGAT
CGACTTTACGGGATGGAAATTAGGAGACACAAAGTTGATAAACAAACAAC
ATTTACTGGACGCTGTCAATGTTTTCCAGAACTGTTTTCCTGCCAGATTT
AAAGGGATTCACTTGATCAACCAGCCGTGGTATGTGAGGGTGATGTTAAC
ACTTATCAAACCCTCCTTGAAAATCAAAGCTCAGAATAGGATATACTACC
ATGGTAAAGACATGTTCGCTTTGCAGAAGTACATCAAACCAGAAGCATTG
CCCATAGAACTTGGTGGTGATATGAACATTCCAGACAAATCATGGCTTTA
TAATGCTCTGCTGGAGCGAGAACTGAAAAAAGAACAGAATAGAGGCAAGA
AACATCGCAAAAATTTCGCCTATTGATTTACTTCAGGAGCTGATTTAACA
AGCTTTCACCTTTCTAATTTCGTCGTAAAACTCATCTCGGGTACTGAAAG
CATCCTCTATCAATTAATATTTTCAACATCTCCTTCTATCGTTCAATTCT
TCTTGTACCAGCCTCATTCCTCCCCCTTATTCCGACCTCTACTCATTAAG
ATTTGGTGATTTTTCCAATATAAGCCACTCATTCCGACCACCACAGTAGC
CTTCTCAGGGCTGTTGGAAtttttgtgtaggagagcacaATTTGTTACCT
TACAGTATACTATGTTGTTGCGGAGTAATTATCTTTAAAtgttatgaata
gataattactttgtcataaaaatctactcTACTGCACAGATTTTCCAACA
CCCCCTGAGAACGCTTACGCAAGTCCctattttaatctttttttcgtCGT
TTTtcgtttcttcaattttttcgtGTATTTTTTGTTCGATTCTGGTTAAT
CAATCAACTGGTGTGTAatggactctcgctaattcgaacgaCGAATCTCA
TTAATCTCGATTTATAGAGAGATTGGAATAAAAATAGTTTGAATTAGCAA
GAGTTCACTGTTTATTTTccttatttattttgaaaatatttattcaagcC
GCGGTCTTTATTTTTAATGTAAAATAATATGAATTTGTACATACGCTTTA
TTTTAGTCATTTTAAAACTCAAACACTTTGAAATGACATGAAATTTGTTA
GAAGAGTTTAGTGCTTAAAATAGCCTGGTCTAcaatttgagatatttttc
cCCGTACGTGATGATCATTCGAGTAATGACCTTTGG Run BLAST on NCBI transcript from alignment at scaffold_266:55026..57859+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055918 ID=TCONS_00055918|Name=TCONS_00055918|organism=Clytia hemisphaerica|type=transcript|length=2834bp|location=Sequence derived from alignment at scaffold_266:55026..57859+ (Clytia hemisphaerica)
ATGTAAATGACGTCGTTATTTTTTGTGAATAGATTTCTCATCTGTGACAA
AAAGATTAAATATAAGTCCAGCTGTGAGTACAGAGTCATATTTTCATGTT
TATGTAATGTCAATTATTTTATTAACATCAAGACAGATTTTATAACTGaa
tggaatattttttttgaacatCAGGACGAAGTTTCAACAGCATGAAATGT
CAATACAAAGTTTCTCGTGAGATAAAATGCTAGTTTGATGTTGTGAGATA
TATTGTTGgggtttgtttttctctttcgtAACAAGATGAACCAGATAGAA
AATCAAGAGGATTGCTTTAAAGTTGCTTTAAAAGAactgaatgaaaacat
tgatACCCGTTCTCTGGATATCGAAGCCATCCGAGATCGTATCAAACTTC
GTCCCGATATTCTGATTAACCGTGACGATGATGAATTTCTCGTACGATTT
CTTCGGGCGCGCAAATACAACAAAGATAAAGCTTTCGAGCTGCTTTGTAA
TTATTGTCAGTTCAGACGGAAAcatcaaatgtttttcaaatcgCTGAAAG
TGTCATGTTTACGACCTGTATTTGAAGATGGACTACCGATGGTATCGCCT
GTAAGGGACCAGTTAGGAAGGAGtgttattttcttgttttctggCAACTG
GAATACTTCTTTGTATACTTTTGAAGACATTCTAAGAGCGTTATTACNGA
CCAGTTAGGAAGGAGtgttattttcttgttttctggCAACTGGAATACTT
CTTTGTATACTTTTGAAGACATTCTAAGAGCGTTATTACTGACTGTTGAA
TATTTGATCGAAAGCGAAAGGACACAAATGTTTGGTGTAACTCTAGTGAT
CGACTTTACGGGATGGAAATTAGGAGACACAAAGTTGATAAACAAACAAC
ATTTACTGGACGCTGTCAATGTTTTCCAGAACTGTTTTCCTGCCAGATTT
AAAGGGATTCACTTGATCAACCAGCCGTGGTATGTGAGGGTGATGTTAAC
ACTTATCAAACCCTCCTTGAAAATCAAAGCTCAGAATAGGGTAAGTAGTC
AATAATTTAATCTTTGTTTATGACTTAACATTTAGCTCACAGTGGGGTTT
ACTAAGTTTAAAAAGTNAAGTAGTCAATAATTTAATCTTTGTTTATGACT
TAACATTTAGCTCACAGGGGGGTTTACTAAGTTTAAAAAGTAAGACACTT
CTGTCTCAGCAGTTCCTTTAGCTGATAAGGAGCTGATAAGAATGCAAATG
AAGCAATCATTCTGATAAAAATCTCCGTACTGGCTTTCACCATTATATTT
TCCATCCCAAATTTTAAGCAATTAAGTGGGTGCGGTTATTCGTCTTGAAA
ACTTCAATAATCGGAGCAATAAAATATCGCAACCAGTTAATCAGAAGTGT
GGCTAAATTTCCTTGCCCTTTGTTATGATTCCTGTGAAGACTAAACCTTC
ATACCCAGGACTTNTAAGACACTTCTGTCTCAGCAGTTCCTTTAGCTGAT
AAGGAGCTGATAAGAATGCAAATGAAGCAATCATTCTGATAAAAATCTCC
GTACTGTAGAAGGGAGCTGGCTTTCACCATTATATTTTCCATCCCAAATT
TTAAGCAATTAAGCGGGTGCGCTTATCGTCTTGAAAACTTCAATAATCGG
AGCAATAAAATATCGCAACCAGTTAATCAGAAGTGTGACTAAATTTCCTT
GCCCTTTGTTATGATTCCTGTGAAGACTAAACCTTCATACCCAGGACTTA
CAAGCCATAGACGTGAATCTAACACTCATATCTCTAAAAAGGAAAGTAAA
gggttttaaatttttgcaatatttttttctttctacagATATACTACCAT
GGTAAAGACATGTTCGCTTTGCAGAAGTACATCAAACCAGAAGCATTGCC
CATAGAACTTGGTGGTGATATGAACATTCCAGACAAATCATGGCTTTATA
ATGCTCTGCTGGAGCGAGAACTGAAAAAAGAACAGAATAGAGGCAAGAAA
CATCGCAAAAATTTCGCCTATTGATTTACTTCAGGAGCTGATTTAACAAG
CTTTCACCTTTCTAATTTCGTCGTAAAACTCATCTCGGGTACTGAAAGCA
TCCTCTATCAATTAATATTTTCAACATCTCCTTCTATCGTTCAATTCTTC
TTGTACCAGCCTCATTCCTCCCCCTTATTCCGACCTCTACTCATTAAGAT
TTGGTGATTTTTCCAATATAAGCCACTCATTCCGACCACCACAGTAGCCT
TCTCAGGGCTGTTGGAAtttttgtgtaggagagcacaATTTGTTACCTTA
CAGTATACTATGTTGTTGCGGAGTAATTATCTTTAAAtgttatgaataga
taattactttgtcataaaaatctactcTACTGCACAGATTTTCCAACACC
CCCTGAGAACGCTTACGCAAGTCCctattttaatctttttttcgtCGTTT
TtcgtttcttcaattttttcgtGTATTTTTTGTTCGATTCTGGTTAATCA
ATCAACTGGTGTGTAatggactctcgctaattcgaacgaCGAATCTCATT
AATCTCGATTTATAGAGAGATTGGAATAAAAATAGTTTGAATTAGCAAGA
GTTCACTGTTTATTTTccttatttattttgaaaatatttattcaagcCGC
GGTCTTTATTTTTAATGTAAAATAATATGAATTTGTACATACGCTTTATT
TTAGTCATTTTAAAACTCAAACACTTTGAAATGACATGAAATTTGTTAGA
AGAGTTTAGTGCTTAAAATAGCCTGGTCTAcaatttgagatatttttccC
CGTACGTGATGATCATTCGAGTAATGACCTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055918-exon-scaffold_266-1491911889:55026..56065 | TCONS_00055918-exon-scaffold_266-1491911889:55026..56065 | Clytia hemisphaerica | exon |
| TCONS_00055918-exon-scaffold_266-1510915933:55026..56065 | TCONS_00055918-exon-scaffold_266-1510915933:55026..56065 | Clytia hemisphaerica | exon |
| TCONS_00055918-exon-scaffold_266-1575043694:55026..56065 | TCONS_00055918-exon-scaffold_266-1575043694:55026..56065 | Clytia hemisphaerica | exon |
| TCONS_00055918-exon-scaffold_266-1491911889:56864..57859 | TCONS_00055918-exon-scaffold_266-1491911889:56864..57859 | Clytia hemisphaerica | exon |
| TCONS_00055918-exon-scaffold_266-1510915933:56864..57859 | TCONS_00055918-exon-scaffold_266-1510915933:56864..57859 | Clytia hemisphaerica | exon |
| TCONS_00055918-exon-scaffold_266-1575043694:56864..57859 | TCONS_00055918-exon-scaffold_266-1575043694:56864..57859 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:55026..57859 + |
Blast
BLAST of TCONS_00055918 vs. Swiss-Prot (Human)
Match: CLVS2 (Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.335e-33 Identity = 64/158 (40.51%), Postives = 93/158 (58.86%), Query Frame = 3
Query: 699 DQLGRSVIFLFSGNWNTSLYTFEDILRALLLTVEYLIESERTQMFGVTLVIDFTGWKLGDTKLINKQHLLDAVNVFQNCFPARFKGIHLINQPWYVRVMLTLIKPSLKIKAQNRIYYHGKDMFALQKYIKPEALPIELGGDMNIPDKSWLYNALLERE 1172
D GR ++ LF+ NW+ S YT DILRA+LL++E +IE Q+ G L+ID++ + + L A+ Q+ FPARF GIH +NQPWY+ + T+I+P LK K + RI+ HG ++ +L + I PE LP E GG + D LL+ E
Sbjct: 112 DHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFVLIIDWSNFTFKQASKLTPSMLRLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVIRPFLKEKTRKRIFLHGNNLNSLHQLIHPEILPSEFGGMLPPYDMGTWARTLLDHE 269 HSP 2 Score: 106.686 bits (265), Expect = 8.262e-25 Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 334 ELNENIDTRSLDIEAIRDRIKLRPDILINRDDDEFLVRFLRARKYNKDKAFELLCNYCQFRRKHQMFFKSLKVS--CLRPVFEDGLPMVSPVRDQLGRSVIFLFSGNWNTSLYTFEDILRALLXT 702
ELNEN DT DI+ +RD + RPDI R DD F++RFLRARK++ +AF LL Y ++R+++ FKS K + ++ +DG P D GR ++ LF+ NW+ S YT DILRA+L +
Sbjct: 19 ELNENPDTLHQDIQEVRDMVITRPDIGFLRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLS 143
The following BLAST results are available for this feature:
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