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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055930 ID=TCONS_00055930|Name=TCONS_00055930|organism=Clytia hemisphaerica|type=transcript|length=984bp
aGTAAAAATTAAGCTTAGAAAACTATTTTGTTCAGTTGAACTTTTTCTTA
TACTCTAGTAAGACGTCATTTTGCAAGGAGCTTCAAGAAAAAAGATACAA
GAAGCTTGAAGAAGACCTAAGAAAAGACAACCGAAGGAAACACAAATAGA
CATACAAACGAAGGATGGGAAAGAAAGGATTGGCATCTGGCgaaggaaag
aaaaagaagaagaaggaacAAGCACCtcaagatgaagaagaaaatgaaca
aCAAGAAGAACAAAAACCAACGTTAGAAGACCTCGAAAAAGACATCGCTC
TATTGAGGGAAAAAGGCAGAGAAGATCCGGAGAATGTGGATTTCGTCCAA
GAATTACGAAAGATTCAAGATCAAATGGCCGACATCATGGGTAAAGACAA
ACGCCCGATGACCGCCAAACCGGGCGAAGAAGAAGAGAgtgaggaagaag
aagaagAGGAGGAAGAGGATCCTGACAAAGAAGTAAAAGACTTGATCAAC
AAACGTCTGACGTCATGTATGTTACTGGCTCTCTCTTTCGAAAGTGAAGA
CTCCTATCCTGAAGATTTTTACGAAAAACTCAAAGAATCTGCAAAACTCG
ACGAAGTCACTGAGCCCATCACCAATGAAGAACGCAAAATTCTCAATAAT
TTGTTGAAAGAGAAAAAACCTGAAGCAAAGAAACGAGTAAAACGTGCTGG
TAAAAATAAAGACACGGCGAAGTCACCCAAGAAGTAATTTTCGTGTTTGT
GTTTTTTCGACCGAgaccaaagtttttgaaattttatcaatAATGGATCA
CCGTTGATACGTCTAAGCTAGGAAGAATGAAACATTTGATTTGACTGGAA
TTGAGAGATTCTTGATAGAAAAGCTAAAGAATTGTAAATTTAGTATTGCT
GACAATAACGCACAATTATATTTTCCTTTGTAAATACACTTTTGTTCCAA
TAGTATCGAAAAACCTACACATTTTTGCCCTTGT Run BLAST on NCBI transcript from alignment at scaffold_266:216943..219171+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055930 ID=TCONS_00055930|Name=TCONS_00055930|organism=Clytia hemisphaerica|type=transcript|length=2229bp|location=Sequence derived from alignment at scaffold_266:216943..219171+ (Clytia hemisphaerica)
aGTAAAAATTAAGCTTAGAAAACTATTTTGTTCAGTTGAACTTTTTCTTA
TACTCTAGTAAGACGTCATTTTGCAAGGAGCTTCAAGAAAAAAGGTGAAC
TTCATTTTTGCAAAGGCAACATATTTTAAAACCTTTTCGACTTTTAATAC
AATAAACAGTAATCAGACAAAGTCAAGTCGTTATCTAATGTCTTATTTAC
TAGAAATTTAATTTCTCATTCGTTATTTTTCACAAGATACAAGAAGCTTG
AAGAAGACCTAAGAAAAGACAACCGAAGGAAACACAAATAGACATACAAA
CGAAGGATGGGAAAGAAAGGATTGGCATCTGGCgaaggaaagaaaaagaa
gaagaaggaacAAGCACCtcaagatgaagaagaaaatgaacaaCAAGAAG
AACAAAAACCAACGTTAGAAGACCTCGAAAAAGACATCGCTCTATTGAGG
GAAAAAGGTAAGAAAACATTAATAAGAGATGGTAGTATTAGTAGTAGATA
CAGAAAACATTTTCCACTTTCATCTAGTGATCAttgtaaaaatttatttg
attgaATTCTTGAAATTAATACTCTAGCTAAATGATGATGAATCCTAAAA
TAATTTTCTGCATTATTTTATGAAATATGAAtgttttttatctgaaaatt
gaATCTCTttctatttcaatgaatttttcAGGCAGAGAAGATCCGGAGAA
TGTGGATTTCGTCCAAGAATTACGAAAGATTCAAGATCAAATGGCCGACA
TCATGGGTAAAGACAAACGCCCGATGACCGCCAAACCGGGCGAAGAAGAA
GAGAgtgaggaagaagaagaaggtgAGAAAGGAAGATTGGATTTTTTATG
GGGAGCGGAAGATCGGATTTCCGATGAAGGGAAAAGGAAAGCACAATAGa
caaccctgtctcagtgacaAACATTTTGCTGTTTAAGGGCAGAATGAAAA
AAGCTAATACCAATGTGTGTTGTCTAATTTTAACTGGCTGGGTTTCATAT
CTTATTACTTCATGTCTCTACCAGTGAGTAGGATAGTGTAGATTTCCAAT
TTAGGATGTTTTTCTCATCGGGGACGATTTTACCAGCGGGAGAGATCCAT
ACGGGGATGTAGATCAATAAGTGGATAAACCGAATTAAACGAGTGTAACA
AAAAGGAAGCAAAGCTGACTATAAGAAATATTAAGGTTTTTTATCCACAA
AGGTTTGCTGGGAGGGGGGTCGAAGTGATGCAGGATCGTTCGAGGAAAAG
GTTTTACCGAAACCACTAcgatcaaagtcataatattttagaagaaaggg
aaattcccaagaaatcttacaaccacaaacgatttgaaaGCGCTCTAAAT
TAAGTTGGATGGATAAGAGCTCTAACTCTGagttaacgctagacttaagg
tCCAAGAATGGTCCGATGGGGCTCAGAATACAGCCTGAAAGTCTATAAAC
CACTCCCGGGTTGAAATATtccaataaatttatcaattagctaGCCTCAA
AGCGACTTtcttgcccgaactttaaattgctaaaaacgaggaattaacca
aaattctcaatatattttgaccaagaTTGTAGATGGTTGttaatatttat
aaaatttaacattttattttataaaatttaacattttattttataaaaaa
atttaacattttattttataaaatttaacattttatttcatttttttaca
gAGGAGGAAGAGGATCCTGACAAAGAAGTAAAAGACTTGATCAACAAACG
TCTGACGTCATGTATGTTACTGGCTCTCTCTTTCGAAAGTGAAGACTCCT
ATCCTGAAGATTTTTACGAAAAACTCAAAGAATCTGCAAAACTCGACGAA
GTCACTGAGCCCATCACCAATGAAGAACGCAAAATTCTCAATAATTTGTT
GAAAGAGAAAAAACCTGAAGCAAAGAAACGAGTAAAACGTGCTGGTAAAA
ATAAAGACACGGCGAAGTCACCCAAGAAGTAATTTTCGTGTTTGTGTTTT
TTCGACCGAgaccaaagtttttgaaattttatcaatAATGGATCACCGTT
GATACGTCTAAGCTAGGAAGAATGAAACATTTGATTTGACTGGAATTGAG
AGATTCTTGATAGAAAAGCTAAAGAATTGTAAATTTAGTATTGCTGACAA
TAACGCACAATTATATTTTCCTTTGTAAATACACTTTTGTTCCAATAGTA
TCGAAAAACCTACACATTTTTGCCCTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055930-exon-scaffold_266-1491911889:216943..217036 | TCONS_00055930-exon-scaffold_266-1491911889:216943..217036 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1510915933:216943..217036 | TCONS_00055930-exon-scaffold_266-1510915933:216943..217036 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1575043694:216943..217036 | TCONS_00055930-exon-scaffold_266-1575043694:216943..217036 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1491911889:217179..217399 | TCONS_00055930-exon-scaffold_266-1491911889:217179..217399 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1510915933:217179..217399 | TCONS_00055930-exon-scaffold_266-1510915933:217179..217399 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1575043694:217179..217399 | TCONS_00055930-exon-scaffold_266-1575043694:217179..217399 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1491911889:217624..217764 | TCONS_00055930-exon-scaffold_266-1491911889:217624..217764 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1510915933:217624..217764 | TCONS_00055930-exon-scaffold_266-1510915933:217624..217764 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1575043694:217624..217764 | TCONS_00055930-exon-scaffold_266-1575043694:217624..217764 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1491911889:218644..219171 | TCONS_00055930-exon-scaffold_266-1491911889:218644..219171 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1510915933:218644..219171 | TCONS_00055930-exon-scaffold_266-1510915933:218644..219171 | Clytia hemisphaerica | exon |
| TCONS_00055930-exon-scaffold_266-1575043694:218644..219171 | TCONS_00055930-exon-scaffold_266-1575043694:218644..219171 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:216943..219171 + |
Blast
The following BLAST results are available for this feature:
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