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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00055935 ID=TCONS_00055935|Name=TCONS_00055935|organism=Clytia hemisphaerica|type=transcript|length=1211bp
ATGGTGCTTAGACTTTGTTATTTTGTAGGACCTGGAAACCTTTGTTGCCT
GTGCAATGTTTGATTAATAAAAGTTTTATTCTTTCAATTGTGACCACTGG
CCCGTTACTTTTCTTTAACCATTGATAAGTTTTGAAGCTAGTTTATCTgt
gatcaaatttaatttttttctcatttagaTTTAGAGTTTTTCAAAGATGG
CTAGCAAAACAATTGAAACCAGTGAAGCGGCAAGTTGcgataaagaaaat
ttaaatattttatcacGACCCACTAGAACAAGGAAGCCAGTACTCACAGA
AATTCTAAGCTCAAGTGACATCGAACTTAGTCCTCCCTTAAACTATGATG
CATTAGAGGAGAATGATGAATATGATCCCAAAAAAAATGAATCTGACGAT
GATTCCGATTTGCCTTCTACACCTCTCACAAAGAAAATAACTAAACCAAC
GAGGGGACGTGGTAGAGGTCGTGGTACAGCATCAACTCGTGGACGTGGGA
CATCATTGACTTCTGGGCGGGGAGCAGCAAAAGGAAGTGGAACACCAAAA
gTGAAATGGGTGTCTCtgttgaaaatgaaaagatgGGAGAGGCTTTAGCT
TTACTTAAGTCGAAAATTTGATGCAAAAGACTTACGAAAATGTGTGTATG
TATATTATGTACAATTTGTGTTTCATTTCAAAACAGATATATTTGATTCA
TTATTAggcttttaaacatttttattatatttttaaatgTAGTAATCATA
TGTGATATATATTCCATTCTATATTTActcattttcatcttttacAGGTG
AAATGTCATTTAAATTGGCATTATTAGATTCTAAGATTTGATCGTAaatt
taagtttaaaaaaacatgtatattttTTGTGTATAATATTTCAAGAtata
tttttaggttttcaaacttttcaaagatttttaaatgtaaatagtTCACA
AGGTGCCTAATTTTATCATTATGTGAGTTAGGTATTTTAGGTCCTCATAT
ATTTATGATAGGAGTATTTTAGTTTTATTTCAACGTCActattgtttttt
tcaaaaaagatttataaattagGATTTTTGTTTTCTCTCGCAAAGAAACT
CAATTTAGCACTGTAAATGCACATTTATCAGTAGGACATGTCGTTgccaa
aagtcaattttttcgaaaattgagtcATATAAagtcatatttagaatttt
ataaattcttg Run BLAST on NCBI transcript from alignment at scaffold_266:320498..322353+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00055935 ID=TCONS_00055935|Name=TCONS_00055935|organism=Clytia hemisphaerica|type=transcript|length=1856bp|location=Sequence derived from alignment at scaffold_266:320498..322353+ (Clytia hemisphaerica)
ATGGTGCTTAGACTTTGTTATTTTGTAGGACCTGGAAACCTTTGTTGCCT
GTGCAATGTTTGATTAATAAAAGTTTTATTCTTTCAATTGTGACCACTGG
CCCGTTACTTTTCTTTAACCATTGATAAGTTTTGAAGCTAGTTTATCTgt
gatcaaatttaatttttttctcatttagaTTTAGAGTTTTTCAAAGATGG
CTAGCAAAACAATTGAAACCAGTGAAGCGGCAAGTTGcgataaagaaaat
ttaaatattttatcacGACCCACTAGAACAAGGAAGCCAGTACTCACAGA
AATTCTAAGCTCAAGTGACATCGAACTTAGTCCTCCCTTAAACTATGATG
CATTAGAGGAGAATGATGAATATGATCCCAAAAAAAATGAATCTGACGAT
GATTCCGATTTGCCTTCTACACCTCTCACAAAGAAAATAACTAAACCAAC
GAGGGGACGTGGTAGAGGTCGTGGTACAGCATCAACTCGTGGACGTGGGA
CATCATTGACTTCTGGGCGGGGAGCAGCAAAAGGAAGTGGAACACCAAAA
GTAGGACGTGGTAGTCGCAAAAGTNGACTTCTGGGCGGGGAACAGCAAAA
GGAAGTGGAACACCAAAAGTAGGACGTGGTAGTCGCAAAAGTGGAGAATT
TTCTACAAAAGCATCTCAAAAATtattctacaaaaagttgagtGGGCTAG
ACAACAAAACCTTTGTTAGTTTGATCAAAGATCTCATAGAAAGTGAGCAA
GTCTCAATGACTACAGTTAACAATAAAATAAACTCCAACATTGATATTGA
TTCAATTATGAAGGGCTTAGAGAAAGCCAAGAAGGCTATTTTCAAAGCCA
TGCCAAACCCATGGAGATTTGGAGGAGGAAGTGCTACTTTTCAAAGAAAT
GATTTTGCACGTAAGCGATGTACCTCTTCCCAAAGTGCATTCAAAACTTT
ATTCAGAAATAACACAACCAATTTCAAAGGGTTGGATAATGGTGACCTCA
TTATTGATTTTGTCTTGAAAGCTTTCCCTGTTGTTTCTGAGCTCCCACAA
TGGATTGGTTGTTTTAAACCTTTAAGCTTTCTGAATGATTGTCTGGATAT
GTTAGGTGGTCTACTTATGCAAGCTATTCCAAAGCTCTCAAATGAAAGAC
TGCAAGATATTGTTGATGAAGTTACAcgtttctcatcttttacaggTGAA
ATGGGTGTCTCtgttgaaaatgaaaagatgGGAGAGGCTTTAGCTTTACT
TAAGTCGAAAATTTGATGCAAAAGACTTACGAAAATGTGTGTATGTATAT
TATGTACAATTTGTGTTTCATTTCAAAACAGATATATTTGATTCATTATT
AggcttttaaacatttttattatatttttaaatgTAGTAATCATATGTGA
TATATATTCCATTCTATATTTActcattttcatcttttacAGGTGAAATG
TCATTTAAATTGGCATTATTAGATTCTAAGATTTGATCGTAaatttaagt
ttaaaaaaacatgtatattttTTGTGTATAATATTTCAAGAtatattttt
aggttttcaaacttttcaaagatttttaaatgtaaatagtTCACAAGGTG
CCTAATTTTATCATTATGTGAGTTAGGTATTTTAGGTCCTCATATATTTA
TGATAGGAGTATTTTAGTTTTATTTCAACGTCActattgtttttttcaaa
aaagatttataaattagGATTTTTGTTTTCTCTCGCAAAGAAACTCAATT
TAGCACTGTAAATGCACATTTATCAGTAGGACATGTCGTTgccaaaagtc
aattttttcgaaaattgagtcATATAAagtcatatttagaattttataaa
ttcttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00055935-exon-scaffold_266-1491911889:320498..321047 | TCONS_00055935-exon-scaffold_266-1491911889:320498..321047 | Clytia hemisphaerica | exon |
| TCONS_00055935-exon-scaffold_266-1510915933:320498..321047 | TCONS_00055935-exon-scaffold_266-1510915933:320498..321047 | Clytia hemisphaerica | exon |
| TCONS_00055935-exon-scaffold_266-1575043694:320498..321047 | TCONS_00055935-exon-scaffold_266-1575043694:320498..321047 | Clytia hemisphaerica | exon |
| TCONS_00055935-exon-scaffold_266-1491911889:321693..322353 | TCONS_00055935-exon-scaffold_266-1491911889:321693..322353 | Clytia hemisphaerica | exon |
| TCONS_00055935-exon-scaffold_266-1510915933:321693..322353 | TCONS_00055935-exon-scaffold_266-1510915933:321693..322353 | Clytia hemisphaerica | exon |
| TCONS_00055935-exon-scaffold_266-1575043694:321693..322353 | TCONS_00055935-exon-scaffold_266-1575043694:321693..322353 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_266 | supercontig | scaffold_266:320498..322353 + |
Blast
The following BLAST results are available for this feature:
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