TCONS_00055986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00055986
Unique NameTCONS_00055986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00055986 ID=TCONS_00055986|Name=TCONS_00055986|organism=Clytia hemisphaerica|type=transcript|length=127bp
tataaaacaaaaccaaacaaaagcCTATCATaccttttcttttaaaatgg
tGGAACTTCAGGCAGAGAAGCCAAAGACAAAAAAGACTGCTATGGTTTTG
gaGGAAGTAGATTTACCTTACGAAGAG
Run BLAST on NCBI

transcript from alignment at scaffold_266:161956..162407-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00055986 ID=TCONS_00055986|Name=TCONS_00055986|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at scaffold_266:161956..162407- (Clytia hemisphaerica)
TATAAAACAAAACCAAACAAAAGCCTATCATACCTTTTCTTTTAAAATGG
TGGAACTTCAGGCAGAGAAGCCAAAGACAAAAAAGACTGCTATGGTTTTG
GTAAGGAAATTTTCTAAAGGGAGAGGTAAAGTTTTCTCAAAAGATAACTT
TGGAAGAATATTCTGTTATGTCCCATAAAGCTTGTAAATTTTCAAATCTT
TTTTTTACCTTATAGTTTAGAAGTATGTGGAATTATTGCAATTTACCTTA
TTTACCTTAACTTATATTTTATTTTTTAGGAGGAAGTAGATTTACCTTAC
GAAGAGGAAATTTTACGACATCCATACNAGTGTGTGGAATTATTGGAGTT
AGTCCTTAGGCGCCATTATACTCCATTTAAATGCATTTTACCTTATTTAC
CTTAACTTATATTTTGATTTTTTAGGAGGAAGTAGATTTACCTTACGAAG
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035237XLOC_035237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00055986-exon-scaffold_266-1575043694:162308..162407TCONS_00055986-exon-scaffold_266-1575043694:162308..162407Clytia hemisphaericaexon
TCONS_00055986-exon-scaffold_266-1575043694:161956..161982TCONS_00055986-exon-scaffold_266-1575043694:161956..161982Clytia hemisphaericaexon
TCONS_00055986-exon-scaffold_266-1510915933:162308..162407TCONS_00055986-exon-scaffold_266-1510915933:162308..162407Clytia hemisphaericaexon
TCONS_00055986-exon-scaffold_266-1510915933:161956..161982TCONS_00055986-exon-scaffold_266-1510915933:161956..161982Clytia hemisphaericaexon
TCONS_00055986-exon-scaffold_266-1491911889:162308..162407TCONS_00055986-exon-scaffold_266-1491911889:162308..162407Clytia hemisphaericaexon
TCONS_00055986-exon-scaffold_266-1491911889:161956..161982TCONS_00055986-exon-scaffold_266-1491911889:161956..161982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:161956..162407 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00055986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top