TCONS_00055990 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00055990
Unique Name	TCONS_00055990
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4669

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_266:193466..201909-
coding sequence from alignment at scaffold_266:193466..201909-

transcript sequence

>TCONS_00055990 ID=TCONS_00055990|Name=TCONS_00055990|organism=Clytia hemisphaerica|type=transcript|length=4669bp
TCTTAACTGATCACCTTCGTTGTGCTGaaaatattacATCTTTACTCAAA
ATGGCCTCTGATGCAACTACTTTGTTTATTGGACGTTTGGGACCAGGTGT
CACTGATAAAGATCTTTCTaacatttttgataaatatggaaGAACCGTCA
GTACCACTATAATTGACGGAAAAGGTTTTGGGTTTGTTCAATTTGAAACA
TCAACTGAAGCAAATGATGCAATCAATGGTGCTAATGGAGCAgaAGTGAA
AGGCTCCCAAATATCAGTTGAAATGGCTAGAGATAAGCAATCATCTTCAT
TCTCTGGTGGTTTCAGAGGCCGTGGTAGAGGAATGAGAAGAGGAAGTGAT
GACGGTGGTTATAGAGGAAGAGGATTTTCTTCCCGCGGAGGTGGATATTC
TCGAGGTGGGTATGGACGCTCAAGAGAATATGATTCAGACAGATCACATG
GTGGACGTGATAGTTTTGAACCAAGAGGTAGAGGTCGTGCAAGAGGTGGT
CCAAGAGGAGCCCCCAGATTTGGAGGTGGTGATAGATATTCAACAGAGGA
CAGGTATGGTGGAGGTGAAAGATCAGAGAGAAGACATAGTGACAGGTTTG
AACGATATGAAGGAGGAAGTAGATATGAGGAAAGATatcaagaagaagaa
gatggtTTAGATGATCGTTATTCAAGAGGTGGTGAAAGAAGAGAACGAAG
GGAATGGCATGAAGAAGAGTATGAAGAACCTAGAGAAAGAAGATCTTCAT
TCGGCCGTGGAGGTAGTTCTAGAGGAAGCTATACTCCACGTGGTAGAGGA
GATTTCAGAAGTTCTGATCGTGGGCGATCTGAACGTGGAAGCTCACGTGG
TGGATTTGCACGTGGTGGTAGTTTCAGCAGAGGTAGTGGGGATCGTGGTG
GCTTTAGCAGACGTGGAGGAGGTGACAGAGGAGGATATTCTAGTGGTTAT
GACCGACATGAAAGAGCTCCCAGAGAAAGCAATAGAGACTGGTATGGTGC
TAGTGAGAGACGAAGTGGAGATGAAGATGGAGGTAGCTATCGTGGAAGAG
GAGCTGGTCGAGGTGGATTTACACCAAGAGGAAGAGGACGTGCGCGTGGA
GGGTTTTCAAGCAGAGGAGGATCCCTTGGTGGTGGACGATCTTTCAGTGA
AGACTATTAAGATAAAAATGTTTTAATTGCTGGATATCGTTGTTATCATG
TCTGTTGAATGGAGAAACATGCAAGGTACTTCAAAAAGCAGAAAGACATT
ATAAACACACAATAAACACAAGAGACAGAACATAAGAACTACAGAATTGA
AAGACATTTTAATAGCACTTTTAAATCGTGTTTTACAATAAACATTTTAT
ACATCTGTGCTGATGGGAGTATTTTATCAAGCTGTTGTACATatcactgg
atatacaagtccATCGTCATGTTTTATCAAGgagattttatagaaaaatt
gtaaaaatcgaAACCAATGGCAGTTCATTTCTTCATGATTTTCTTGCAAT
CACCAAATATTGATTGAGTTTATAAactcaatttatttttttgtctcAGC
CAAATGTCAGAAATGTCAATTCTGTCACAAATTCCTGAACATTCCCAATT
TATTAATTTGAAATATGAATACGGACTTCAAACATTTAATAATAAGTTTG
TCTTCAAATATTTCTTCCTTTGCAAGGATTTTAAAGTATCTTTGAATTGG
AGTTCATTATCCCTAAGCATTCTCGTATCAGAAGAATGGGGAATTTGTTA
ATTTAGACTAAATTGAAAGACCACTGCATTccataaaaaaaattcgaaag
tgaTTTTGTAACCTTGATCCATGTATTATCTCTTATCCTGATTTTATACA
CCAGTTAATTTTAAAACGCTACAGGTAGAATACAAGCAGAAAAACAGCGA
CTAGTAGCTCGTGGGTTCAATCTGCACTCAATCAATTCATTACCTTTGGG
ATAGCTGGGAAGTAGCTAGGATCATTAGAAAAACACTTTAAATTTGTTAT
TAGTTGTTGGGTTACTTACTGGCTGTTCGGGAACAAATTAGGATAAGTGA
AGGGATCTTCAAAGGAATCCCCcttttaaaatatttggcaTTATAACTTC
AGGTATCCACAGACCCCCAAAAATTTATTCAAGACCCGTCACATTTAATG
TGACCATTTGCAATTAAATAAATTATCTTTGATCAGAAAAGGTTGaagaa
acaagaagaaaaattaaccagcacaattaaaaaattgttcACAAAGAATC
CTACATTTCTACCATAAAGAGAAGTTTACTCTACAGTATCCAGcaataga
atttcattcaagAGCAGAAAGACAGAATGTAAAATTATACAGGTAAAATG
GTAATGTATatgatatttcaaaattcagcACCACAAAGCATAGTGTACTT
TGTACACATTACAATATTTGAGGGCGAAATATGGTGGAGATTGATACTGC
TTTTCTCAtgattgaattttattttgaaatttcacaaTTAATATTAAGGC
TTTTCAAGCATGTCTTTgtgtcaaaatcaatttaattgaaaaacGAAATA
AATTCACTCTTCCTTACTCCAACATTGCGACAAGTATGATATTTCACCAA
CCATTTGAGCAAGCAAATTAGCACTATGAAAATCTCATCACAGGCAGGTA
ACTTGATCTTAGAGAGAATTTACAAAGACCAGCAAGAATTAATTCATCAC
AACTTCAAGACATCGGCAGGTAAAATCATTCTTTAATCATCCGAGAGGAA
CACTCAAACAGATTGCTGCTTGTTTATTTTATAAATAGCAATTATGTAAT
AAGCAGGTAATATCATAAATTTTCACTCTTCGATTTTCAATAtgttaaaa
aaatcaattgCCCCTAATGGTTGCATACacttatttgagaataaggaata
tcaatattttactgcaaaagtcttcatttgtATCTTCATCTTTCACTTCA
AAATAATCACAACGTTGTAACTTCAGGAACCTATATTTATGCAAGTTATG
GTAATGATTTGGCTCTACAGTTTAACTATTCAAAgagactttttcaaaat
atttctagaaGATGGCATAATAGAAAAAATGACATATATTCCTctgcaaa
attttcaattcatgTCACATATACATTTAACTACCACATGTTTAGAAAAT
GACTAAGATTTAGTCTTATTCTCGACCTATCAGGAATTGAAAGTATTGGA
CAGTTAAGTTAAAATGAGATCTAAATAACTCAAAAAAGTGCAAAAGCAAA
CTTTTAAGAATTATTCTCCCTGATCAATTTCTTAGAATCAGTTCTTTTTT
CATCCTCAATGACAACATATTCTTAAGGAAAACACATGTAGAAACTGACT
GTAGGCactcaaaacaatggaaaactCAATTCAAAGTACAATTCTCTGAA
AAACTTGTGTCGACTTACTTTAAttggataaactttcgcggggattaaat
ttcgcggatttcgcggatttgggtgtcatccgcgaaaatccgcgtaatta
agtcccaatggaaatttggaagggcctcgtccgcgaaatatttctaaaca
aaactcaaaatatgtcaaataaatactatttgaatggttacttgcatcaa
agaggcgcaaataatgtgtatttcaaccaGTTTCAACAACCAacgatttg
acagtaaaagtcacaaaattgtgaaaatagtgccacccgcgaaatttaat
ccccgcgaaagtttatcccattaaagtatcaaAACTTGACATGCAGATGA
CGCTTGTTTAATCTGAGAGATTTTTTATACAGATTGAAACCAAAGTCCAG
GCTTTTCAAAAGCCAGTCACATAACTGAAATTTCTCCACTGTTTTGCTTC
ATAAGTTTGCTACCTTCCCTTTCAATCTTTTAGATTGATGGTTCACCAGA
TTTGTATCCTAAGAAGTACAGCGCCCTTAAAATCCTTTTGAGCAATGATT
TCAAGATGGGAAATGGGAACTTCTTAATTGaaacTATCCAACCAAACCCA
TGTCAAAAGGCAATCGACGAAGATGAACAGTGTTATTTATTGTTGAGTAA
CTGATGAACATTTGAATGTTATAAATAATATCACAAAACGGATACATAAA
TTACCATCAATACACCTTTCGACCACatccgccaattgccgcgcgggcat
ttttttgtccgttaccaccctaaaaccgtcccagtctttctTTCGCACCT
agagacaaaagaaaaaagtgtataAAAAGAATTCGATcaagtttaggggg
ataattaaataataaagtggcacgcgcctgaccgcgtgaCTACGGCCGAA
AAGATGTATTAGGATGTTTAATTTCaataaagaaacttttttgtttaacc
aaaattagatagataatgatgatgataatttatttctaattttcttattt
ttataaatttttcaaagctatttattgttttaataataaattttttaatt
gtatGATATGAACTTTTTACAGAAATTACAATAAAATCTATTGAAATTGT
CAATACAATATATAGAGtatctttttaaataaataaattaactACAATCC
ATTAACCTACTTTGGAGCACAATCGTTAACTTTGTTCTCATCTAAATTCA
ATtctgaatttctttttctctaATATTTTAGTCAATCCTTTCATGCCTTT
AAAATGATGTCATGTTAAT

Run BLAST on NCBI

protein sequence of TCONS_00055990-protein

>TCONS_00055990-protein ID=TCONS_00055990-protein|Name=TCONS_00055990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
LTDHLRCAENITSLLKMASDATTLFIGRLGPGVTDKDLSNIFDKYGRTVS
TTIIDGKGFGFVQFETSTEANDAINGANGAEVKGSQISVEMARDKQSSSF
SGGFRGRGRGMRRGSDDGGYRGRGFSSRGGGYSRGGYGRSREYDSDRSHG
GRDSFEPRGRGRARGGPRGAPRFGGGDRYSTEDRYGGGERSERRHSDRFE
RYEGGSRYEERYQEEEDGLDDRYSRGGERRERREWHEEEYEEPRERRSSF
GRGGSSRGSYTPRGRGDFRSSDRGRSERGSSRGGFARGGSFSRGSGDRGG
FSRRGGGDRGGYSSGYDRHERAPRESNRDWYGASERRSGDEDGGSYRGRG
AGRGGFTPRGRGRARGGFSSRGGSLGGGRSFSEDY

Run BLAST on NCBI

transcript from alignment at scaffold_266:193466..201909-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00055990 ID=TCONS_00055990|Name=TCONS_00055990|organism=Clytia hemisphaerica|type=transcript|length=8444bp|location=Sequence derived from alignment at scaffold_266:193466..201909- (Clytia hemisphaerica)
TCTTAACTGATCACCTTCGTTGTGCTGGTATGTCTTGTTCACTGGAAAAG
ATGGTTTATTTTATCCCTGGTCTCTATTGACAGTTACATAGGATGTAGGC
TTTTGCGTATCAGTATCATTTACAAATCCCATTATTAGTTAGCCTCTGAA
GAGATCATCTGTAACTGTTCTTTTCATCACTGTCTTGCATTAACGTCCGC
CAGGCAGGCAGAAGAACAAACAGGCTTAAGCACCCCTATATGTATCTCTG
AACAGCCCAACAGCCAGTGGTGTTGTGGGAAAATTTTTCTGGAGGGGCCA
AAGTCAATTTTTTAGAATGGCGCCTCCATAGACCTTTTTTTAAAGAGGCA
GCCATGTTGAATAATTATGTACTCCAGCATAAAAACAATGATACAGCCAT
GCATAGTTACTGTATGCATATTTTAAAATTATGTATGGCTGTATCATTGT
TTTTATGCTGGAGTACTATAATTATTCAACATGGCTGCCTCTTTAAAAAA
AGGTCTTTTTTCCAAAGTGACGCACCAACCCACCCACCATTTCGAAACTT
TTACTAATTCATTTGCCTAGGCATAATGAGGAAAGAAATATTTAGTGGAT
AAGAGTAGATATATCTTTGATAGATGGAAAAGGGAAAAACAGGCCCCACC
ATAAATCTGACACTTGCCAGAGTGAAAAGAAACAGTATTATAAATTGGTT
TTACGCAGTTAGATTTTTATTTAATATAAATGCTATATTGTAGTATTGCA
CACAAAAAAACTTGTAAATGAGCTAGATTGTAAAGAAGTTACCAATGCAA
TGAACTTTATTGCGAGCGAAGCAAGCGAAAAAAATTGCAAGTGATTTAAA
ATTATCCCAGTAAAAATGGTCTTGGGGCGCAGTTAAAGGCGCAAAAAGTA
TGATTTTTAAGATTGGGGGCGTTTAAAAAAATCTCTTTTGGCAACCCTTA
CTCGAAAGGCGCCCCCATCAGTGATTCTGACCTTCTTATTATTCCTAATT
GAAACTTCCAAATGTTCAAGAGATTCCTGACAACTCCAGATAAAAAAATA
GAAAATAAAAGATCTACTCTCACTTGTCATAATTCAAGAAGGTCAGTGTC
CGATACCTGGACGCTAAAAAGTCATGAAAAATGGTCTGAGTACCTAAATA
AAAGAATGTTGTGAAGTTGAAAAGTTTAGAAAGAAAAAAATGAAAATGGG
TAGGACATATACTTATAGGAATTTTTTGAATTTGCTTTATCAATTTACTA
CCGTGTCAATCTAAATTTAGAAAATATTACATCTTTACTCAAAATGGCCT
CTGATGCAACTACTTTGTTTATTGGACGTTTGGGACCAGGTGTCACTGAT
AAAGATCTTTCTAACATTTTTGATAAATATGGAAGAACCGTCAGTAGTGA
GTATTTTCATCCTCGTGAATTGTTACTAGGTTACCCAATCAATAGGATGA
TTTGAATCAACTTTCATTTTCTACATCAACTGTCATCAATAACAGCTCTA
GGCTGCAATTTGAAAACTGTTGGTTTGTCGTCATCCGACTGACCCTAACT
CAAAACCTGCCTACCCAAAAAAATTTATTGCCAATTTCAAAAAAGATTTC
TTTCTTCAAATCAGAACGTTTTGTCTGTCTTGTCCAATTTTAAGCTTTTA
AGAATCGTGAATTCCTTTCTAGCTCTTCCGGTTTCATTTCAATATTATCT
AAATGTAAGCTGAACTTTCATAAATCCTCAAAAACCTAGGCTAGGGTTGG
GTGACAGCAAACCAACATTTTGAGTTCAAGTCCAGTCCTATTTATTTTAC
TTTGGTCTTTCTTTCAGCCACTATAATTGACGGAAAAGGTTTTGGGTTTG
TTCAATTTGAAACATCAACTGAAGCAAATGATGCAATCAATGGTGCTAAT
GGAGCAGTAAGGGTTTTTTCTCTATTTTTATAATTCAGTATTGTCAGTGA
TTCAATGATCGCTCACTTGTTTATAGGGAAAATTAACTTCTCTAGCAAAA
GATATAGTTTTTTTATGTTACCTGAAATCTAATCTTTTTAAAAGCAGCGC
ATGTTTGTTAGGGCTCTTGCTTTTAGTTGATAGAGAACTTCTAACTTTTT
TAGTGCAACCATAAATTTTTATCCACAGATGGGTTAGTCAAGAGAAAGAT
ATTATCAGAAAGCTATTTTTGAGTGGAGTAAAACTATAAACAAACTTTTG
AAAACATGCGAGTGAAAATAATTTTAAAGAATCAATTAAAAAGATTTAAC
TTTTTATTGGAATAAGCTGAAAACCCTATCTTTAGCCCTATTTTTACAGA
AGGTTTCATACAAAATAAGAAAGAGATTGAGAATGAAATTGATATTTTTT
CGATGTTATACTATATTGTGTAGTACTTGGAAACAATAAAAGCATTACCT
CAAAAAAATGATTGGTTCCCCTTTAAAAATCCTTGGGCAGTTCTAAGCTT
TTATTTAAAAAAAAATCCAAGAATTATTATTACATAGGCTTTCGTAGAAT
TTAGAAAGAACAATGGAATAATAATTTAATATTTTTTTTTAGGAAGTGAA
AGGCTCCCAAATATCAGTTGAAATGGCTAGAGATAAGCAATCATCTTCAT
TCTCTGGTGGTTTCAGAGGCCGTGGTAGAGGAATGAGAAGAGGAAGTGAT
GACGGTGGTTATAGAGGAAGAGGATTTTCTTCCCGCGGAGGTGGATATTC
TCGAGGTGGGTATGGACGCTCAAGAGAATATGATTCAGACAGATCACATG
GTGGACGTGATAGTTTTGAACCAAGAGGTAGAGGTCGTGCAAGAGGTGGT
CCAAGAGGAGCCCCCAGATTTGGAGGTGGTGATAGATATTCAACAGAGGA
CAGGTATGGTGGAGGTGAAAGATCAGAGAGAAGACATAGTGACAGGTTTG
AACGATATGAAGGAGGAAGTAGATATGAGGAAAGATATCAAGAAGAAGAA
GATGGTTTAGATGATCGTTATTCAAGAGGTGGTGAAAGAAGAGAACGAAG
GGAATGGCATGAAGAAGAGTATGAAGAACCTAGAGAAAGAAGATCTTCAT
TCGGCCGTGGAGGTAGTTCTAGAGGAAGCTATACTCCACGTGGTAGAGGA
GATTTCAGAAGTTCTGATCGTGGGCGATCTGAACGTGGAAGCTCACGTGG
TGGATTTGCACGTGGTGGTAGTTTCAGCAGAGGTAGTGGGGATCGTGGTG
GCTTTAGCAGACGTGGAGGAGGTGACAGAGGAGGATATTCTAGTGGTTAT
GACCGACATGAAAGAGCTCCCAGAGAAAGCAATAGAGACTGGTATGGTGC
TAGTGAGAGACGAAGTGGAGGTGAAGACAGACATGGAAGTGGGGAACGAT
TTCAGAGACACAGAGATGAAGATGGAGGTAGCTATCGTGGAAGAGGAGCT
GGTCGAGGTGGATTTACACCAAGAGGAAGAGGACGTGCGCGTGGAGGGTT
TTCAAGCAGAGGAGGATCCCTTGGTGGTGGACGATCTTTCAGTGAAGACT
ATTAAGATAAAAATGTAAGTTCATTATAAACTTAACTTTTTTAACTGCAG
TTCAAATCTTAAGTGACAATCTCTAGCTGTCTTTCTGTCCTTTGTATCCT
GGTTGTTAGAGTAGGCAGAAATTTGGCAGTTAAAATCTTTCATCATAAAT
ATTAGAGAGAAGCCATCCCTTTGGTATCAAATGAAAGCAATGCAATGACT
TTAAACAGCCAATTTTCTGACCACTCTATAATTCACAATTGAAATAGGGG
CATGGCAAAAACTGCGTAGCCTAAATCTGAGCTAAGATTTGCAGACTCAT
TGCACACAAAAAAATGTTGTGTGTCTTGCACATCCAGGCATATCAACAAT
GTCTCAGCATTTTCAAAATTAGTTTGACCAGCATGGGATAATACAGGATA
ATAGAATAAAAAGTGCCACATACACTGCATCTACTGTATAAATATTGCAA
AATCTTCTTCATGTGCATAGTCAGAACTTGAACTGCATAATTTAAACTGG
ATGATCTTAAATGCTTGGGTGATCAAACTTTTTTCAAGTGTTTATTCTCA
ATTATTACAAATTATTTTCATTTATTTGTATTCAGCAAAGTAATTCATCA
AAGTAGTTTTTTTACTGCTTTCTAACACATGATTTTCTCAAATGCACCTT
GTTCAACTTTGGAAACTCATTTTCTTTCATTAAAAGGTTTTAATTGCTGG
ATATCGTTGTTATCATGTCTGTTGAATGGAGAAACATGCAAGGTACTTCA
AAAAGCAGAAAGACATTATAAACACACAATAAACACAAGAGACAGAACAT
AAGAACTACAGAATTGAAAGACATTTTAATAGCACTTTTAAATCGTGTTT
TACAATAAACATTTTATACATCTGTGCTGATGGGAGTATTTTATCAAGCT
GTTGTACATATCACTGGATATACAAGTCCATCGTCATGTTTTATCAAGGA
GATTTTATAGAAAAATTGTAAAAATCGAAACCAATGGCAGTTCATTTCTT
CATGATTTTCTTGCAATCACCAAATATTGATTGAGTTTATAAACTCAATT
TATTTTTTTGTCTCAGCCAAATGTCAGAAATGTCAATTCTGTCACAAATT
CCTGAACATTCCCAATTTATTAATTTGAAATATGAATACGGACTTCAAAC
ATTTAATAATAAGTTTGTCTTCAAATATTTCTTCCTTTGCAAGGATTTTA
AAGTATCTTTGAATTGGAGTTCATTATCCCTAAGCATTCTCGTATCAGAA
GAATGGGGAATTTGTTAATTTAGACTAAATTGAAAGACCACTGCATTCCA
TAAAAAAAATTCGAAAGTGATTTTGTAACCTTGATCCATGTATTATCTCT
TATCCTGATTTTATACACCAGTTAATTTTAAAACGCTACAGGTAGAATAC
AAGCAGAAAAACAGCGACTAGTAGCTCGTGGGTTCAATCTGCACTCAATC
AATTCATTACCTTTGGGATAGCTGGGAAGTAGCTAGGATCATTAGAAAAA
CACTTTAAATTTGTTATTAGTTGTTGGGTTACTTACTGGCTGTTCGGGAA
CAAATTAGGATAAGTGAAGGGATCTTCAAAGGAATCCCCCTTTTAAAATA
TTTGGCATTATAACTTCAGGTATCCACAGACCCCCAAAAATTTATTCAAG
ACCCGTCACATTTAATGTGACCATTTGCAATTAAATAAATTATCTTTGAT
CAGAAAAGGTTGAAGAAACAAGAAGAAAAATTAACCAGCACAATTAAAAA
ATTGTTCACAAAGAATCCTACATTTCTACCATAAAGAGAAGTTTACTCTA
CAGTATCCAGCAATAGAATTTCATTCAAGAGCAGAAAGACAGAATGTAAA
ATTATACAGGTAAAATGGTAATGTATATGATATTTCAAAATTCAGCACCA
CAAAGCATAGTGTACTTTGTACACATTACAATATTTGAGGGCGAAATATG
GTGGAGATTGATACTGCTTTTCTCATGATTGAATTTTATTTTGAAATTTC
ACAATTAATATTAAGGCTTTTCAAGCATGTCTTTGTGTCAAAATCAATTT
AATTGAAAAACGAAATAAATTCACTCTTCCTTACTCCAACATTGCGACAA
GTATGATATTTCACCAACCATTTGAGCAAGCAAATTAGCACTATGAAAAT
CTCATCACAGGCAGGTAACTTGATCTTAGAGAGAATTTACAAAGACCAGC
AAGAATTAATTCATCACAACTTCAAGACATCGGCAGGTAAAATCATTCTT
TAATCATCCGAGAGGAACACTCAAACAGATTGCTGCTTGTTTATTTTATA
AATAGCAATTATGTAATAAGCAGGTAATATCATAAATTTTCACTCTTCGA
TTTTCAATATGTTAAAAAAATCAATTGCCCCTAATGGTTGCATACACTTA
TTTGAGAATAAGGAATATCAATATTTTACTGCAAAAGTCTTCATTTGTAT
CTTCATCTTTCACTTCAAAATAATCACAACGTTGTAACTTCAGGAACCTA
TATTTATGCAAGTTATGGTAATGATTTGGCTCTACAGTTTAACTATTCAA
AGAGACTTTTTCAAAATATTTCTAGAAGATGGCATAATAGAAAAAATGAC
ATATATTCCTCTGCAAAATTTTCAATTCATGTCACATATACATTTAACTA
CCACATGTTTAGAAAATGACTAAGATTTAGTCTTATTCTCGACCTATCAG
GAATTGAAAGTATTGGACAGTTAAGTTAAAATGAGATCTAAATAACTCAA
AAAAGTGCAAAAGCAAACTTTTAAGAATTATTCTCCCTGATCAATTTCTT
AGAATCAGTTCTTTTTTCATCCTCAATGACAACATATTCTTAAGGAAAAC
ACATGTAGAAACTGACTGTAGGCACTCAAAACAATGGAAAACTCAATTCA
AAGTACAATTCTCTGAAAAACTTGTGTCGACTTACTTTAATTGGATAAAC
TTTCGCGGGGATTAAATTTCGCGGATTTCGCGGATTTGGGTGTCATCCGC
GAAAATCCGCGTAATTAAGTCCCAATGGAAATTTGGAAGGGCCTCGTCCG
CGAAATATTTCTAAACAAAACTCAAAATATGTCAAATAAATACTATTTGA
ATGGTTACTTGCATCAAAGAGGCGCAAATAATGTGTATTTCAACCAGTTT
CAACAACCAACGATTTGACAGTAAAAGTCACAAAATTGTGAAAATAGTGC
CACCCGCGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAGTATCAAA
ACTTGACATGCAGATGACGCTTGTTTAATCTGAGAGATTTTTTATACAGA
TTGAAACCAAAGTCCAGGCTTTTCAAAAGCCAGTCACATAACTGAAATTT
CTCCACTGTTTTGCTTCATAAGTTTGCTACCTTCCCTTTCAATCTTTTAG
ATTGATGGTTCACCAGATTTGTATCCTAAGAAGTACAGCGCCCTTAAAAT
CCTTTTGAGCAATGATTTCAAGATGGGAAATGGGAACTTCTTAATTGGTA
AGTTAACAGAATTGGAAGCTTTCACATGAGAAATAAGCTGAAATACTTTA
ATCAGATTAAATTTATTAAGCGAAAATTCTAGATTTAGTTTTGCAAATGA
GTATTTTGAAAATTCCTGCGCAGATTTATATTAATTTATGTGAATCAACC
AAAATTCAATGAAAGTAGCCCTGAAAATGCCAAAAATACCAAATTGTATT
TTAGATTTAAAAACGGGATTTTTGTATTTTTTTGGGGGCTGAAATATTGG
TTTGTCGTCATCGGACCGTCCCTACCTCGAAGCCTGCCGACCTGAAAAAT
ACATTGCCATTTAAAAGAATTCTTTTTTTCCCAATCAGAACCTCTATTGT
GTCCGTCTCACTTTATCTCATTCAGAATCGTGAATTCCCTTCTAGCTCCC
TTCTAAATTAACCAAATGGCAAATGTAAACTGAACTTTCATAAAACTTCA
AAATAATTTTTTTCTGACCGGACTGACCCACCTCCAAAGTCTGGTGCGGC
AAGACAACATTTTTTTTAAGTGCAGCCTGGATTTAATTATTATTGCGAAA
ATGGTAAAAATTCACCAAAATTGCGAAGGTTAATCTTAGGAAAATTGATC
AAATAAAAAAGAGGTTACACTTGACCATGTCCAGACAACTTAGCGAAATC
TTTGTTTTGAAGGTCTTTTGACTTTAGTTTGTTGTTAGCAATGTCTTTAA
AAGAAATTAAAGAAACAAGAATTGGAAGATTTAAATAGTTTTCTTTTGTT
TTTAGAAACTATCCAACCAAACCCATGTCAAAAGGCAATCGACGAAGATG
AACAGTGTTATTTATTGTTGAGTAACTGATGAACATTTGAATGTTATAAA
TAATATCACAAAACGGATACATAAATTACCATCAATACACCTTTCGACCA
CATCCGCCAATTGCCGCGCGGGCATTTTTTTGTCCGTTACCACCCTAAAA
CCGTCCCAGTCTTTCTTTCGCACCTAGAGACAAAAGAAAAAAGTGTATAA
AAAGAATTCGATCAAGTTTAGGGGGATAATTAAATAATAAAGTGGCACGC
GCCTGACCGCGTGACTACGGCCGAAAAGATGTATTAGGATGTTTAATTTC
AATAAAGAAACTTTTTTGTTTAACCAAAATTAGATAGATAATGATGATGA
TAATTTATTTCTAATTTTCTTATTTTTATAAATTTTTCAAAGCTATTTAT
TGTTTTAATAATAAATTTTTTAATTGTATGATATGAACTTTTTACAGAAA
TTACAATAAAATCTATTGAAATTGTCAATACAATATATAGAGTATCTTTT
TAAATAAATAAATTAACTACAATCCATTAACCTACTTTGGAGCACAATCG
TTAACTTTGTTCTCATCTAAATTCAATTCTGAATTTCTTTTTCTCTAATA
TTTTAGTCAATCCTTTCATGCCTTTAAAATGATGTCATGTTAAT

Coding sequence (CDS) from alignment at scaffold_266:193466..201909-

>TCONS_00055990 ID=TCONS_00055990|Name=TCONS_00055990|organism=Clytia hemisphaerica|type=CDS|length=5790bp|location=Sequence derived from alignment at scaffold_266:193466..201909- (Clytia hemisphaerica)
ATGAAGATGGAGGTAGCTATCGTGGAAGAGGAGCTGGTCGAGGTGGATTT
ACACCAAGAGGAAGAGGACGTGCGCGTGGAGGGTTTTCAAGCAGAGGAGG
ATCCCTTGGTGGTGGACGATCTTTCAGTGAAGACTATTAAGAAGTGAAAG
GCTCCCAAATATCAGTTGAAATGGCTAGAGATAAGCAATCATCTTCATTC
TCTGGTGGTTTCAGAGGCCGTGGTAGAGGAATGAGAAGAGGAAGTGATGA
CGGTGGTTATAGAGGAAGAGGATTTTCTTCCCGCGGAGGTGGATATTCTC
GAGGTGGGTATGGACGCTCAAGAGAATATGATTCAGACAGATCACATGGT
GGACGTGATAGTTTTGAACCAAGAGGTAGAGGTCGTGCAAGAGGTGGTCC
AAGAGGAGCCCCCAGATTTGGAGGTGGTGATAGATATTCAACAGAGGACA
GGTATGGTGGAGGTGAAAGATCAGAGAGAAGACATAGTGACAGGTTTGAA
CGATATGAAGGAGGAAGTAGATATGAGGAAAGATATCAAGAAGAAGAAGA
TGGTTTAGATGATCGTTATTCAAGAGGTGGTGAAAGAAGAGAACGAAGGG
AATGGCATGAAGAAGAGTATGAAGAACCTAGAGAAAGAAGATCTTCATTC
GGCCGTGGAGGTAGTTCTAGAGGAAGCTATACTCCACGTGGTAGAGGAGA
TTTCAGAAGTTCTGATCGTGGGCGATCTGAACGTGGAAGCTCACGTGGTG
GATTTGCACGTGGTGGTAGTTTCAGCAGAGGTAGTGGGGATCGTGGTGGC
TTTAGCAGACGTGGAGGAGGTGACAGAGGAGGATATTCTAGTGGTTATGA
CCGACATGAAAGAGCTCCCAGAGAAAGCAATAGAGACTGGTATGGTGCTA
GTGAGAGACGAAGTGGAGCCACTATAATTGACGGAAAAGGTTTTGGGTTT
GTTCAATTTGAAACATCAACTGAAGCAAATGATGCAATCAATGGTGCTAA
TGGAGCAAAAATATTACATCTTTACTCAAAATGGCCTCTGATGCAACTAC
TTTGTTTATTGGACGTTTGGGACCAGGTGTCACTGATAAAGATCTTTCTA
ACATTTTTGATAAATATGGAAGAACCGTCAGTATTAACTGATCACCTTCG
TTGTGCTGATGAAGATGGAGGTAGCTATCGTGGAAGAGGAGCTGGTCGAG
GTGGATTTACACCAAGAGGAAGAGGACGTGCGCGTGGAGGGTTTTCAAGC
AGAGGAGGATCCCTTGGTGGTGGACGATCTTTCAGTGAAGACTATTAAGA
AGTGAAAGGCTCCCAAATATCAGTTGAAATGGCTAGAGATAAGCAATCAT
CTTCATTCTCTGGTGGTTTCAGAGGCCGTGGTAGAGGAATGAGAAGAGGA
AGTGATGACGGTGGTTATAGAGGAAGAGGATTTTCTTCCCGCGGAGGTGG
ATATTCTCGAGGTGGGTATGGACGCTCAAGAGAATATGATTCAGACAGAT
CACATGGTGGACGTGATAGTTTTGAACCAAGAGGTAGAGGTCGTGCAAGA
GGTGGTCCAAGAGGAGCCCCCAGATTTGGAGGTGGTGATAGATATTCAAC
AGAGGACAGGTATGGTGGAGGTGAAAGATCAGAGAGAAGACATAGTGACA
GGTTTGAACGATATGAAGGAGGAAGTAGATATGAGGAAAGATATCAAGAA
GAAGAAGATGGTTTAGATGATCGTTATTCAAGAGGTGGTGAAAGAAGAGA
ACGAAGGGAATGGCATGAAGAAGAGTATGAAGAACCTAGAGAAAGAAGAT
CTTCATTCGGCCGTGGAGGTAGTTCTAGAGGAAGCTATACTCCACGTGGT
AGAGGAGATTTCAGAAGTTCTGATCGTGGGCGATCTGAACGTGGAAGCTC
ACGTGGTGGATTTGCACGTGGTGGTAGTTTCAGCAGAGGTAGTGGGGATC
GTGGTGGCTTTAGCAGACGTGGAGGAGGTGACAGAGGAGGATATTCTAGT
GGTTATGACCGACATGAAAGAGCTCCCAGAGAAAGCAATAGAGACTGGTA
TGGTGCTAGTGAGAGACGAAGTGGAGCCACTATAATTGACGGAAAAGGTT
TTGGGTTTGTTCAATTTGAAACATCAACTGAAGCAAATGATGCAATCAAT
GGTGCTAATGGAGCAAAAATATTACATCTTTACTCAAAATGGCCTCTGAT
GCAACTACTTTGTTTATTGGACGTTTGGGACCAGGTGTCACTGATAAAGA
TCTTTCTAACATTTTTGATAAATATGGAAGAACCGTCAGTATTAACTGAT
CACCTTCGTTGTGCTGATGAAGATGGAGGTAGCTATCGTGGAAGAGGAGC
TGGTCGAGGTGGATTTACACCAAGAGGAAGAGGACGTGCGCGTGGAGGGT
TTTCAAGCAGAGGAGGATCCCTTGGTGGTGGACGATCTTTCAGTGAAGAC
TATTAAGAAGTGAAAGGCTCCCAAATATCAGTTGAAATGGCTAGAGATAA
GCAATCATCTTCATTCTCTGGTGGTTTCAGAGGCCGTGGTAGAGGAATGA
GAAGAGGAAGTGATGACGGTGGTTATAGAGGAAGAGGATTTTCTTCCCGC
GGAGGTGGATATTCTCGAGGTGGGTATGGACGCTCAAGAGAATATGATTC
AGACAGATCACATGGTGGACGTGATAGTTTTGAACCAAGAGGTAGAGGTC
GTGCAAGAGGTGGTCCAAGAGGAGCCCCCAGATTTGGAGGTGGTGATAGA
TATTCAACAGAGGACAGGTATGGTGGAGGTGAAAGATCAGAGAGAAGACA
TAGTGACAGGTTTGAACGATATGAAGGAGGAAGTAGATATGAGGAAAGAT
ATCAAGAAGAAGAAGATGGTTTAGATGATCGTTATTCAAGAGGTGGTGAA
AGAAGAGAACGAAGGGAATGGCATGAAGAAGAGTATGAAGAACCTAGAGA
AAGAAGATCTTCATTCGGCCGTGGAGGTAGTTCTAGAGGAAGCTATACTC
CACGTGGTAGAGGAGATTTCAGAAGTTCTGATCGTGGGCGATCTGAACGT
GGAAGCTCACGTGGTGGATTTGCACGTGGTGGTAGTTTCAGCAGAGGTAG
TGGGGATCGTGGTGGCTTTAGCAGACGTGGAGGAGGTGACAGAGGAGGAT
ATTCTAGTGGTTATGACCGACATGAAAGAGCTCCCAGAGAAAGCAATAGA
GACTGGTATGGTGCTAGTGAGAGACGAAGTGGAGCCACTATAATTGACGG
AAAAGGTTTTGGGTTTGTTCAATTTGAAACATCAACTGAAGCAAATGATG
CAATCAATGGTGCTAATGGAGCAAAAATATTACATCTTTACTCAAAATGG
CCTCTGATGCAACTACTTTGTTTATTGGACGTTTGGGACCAGGTGTCACT
GATAAAGATCTTTCTAACATTTTTGATAAATATGGAAGAACCGTCAGTAT
TAACTGATCACCTTCGTTGTGCTGATGAAGATGGAGGTAGCTATCGTGGA
AGAGGAGCTGGTCGAGGTGGATTTACACCAAGAGGAAGAGGACGTGCGCG
TGGAGGGTTTTCAAGCAGAGGAGGATCCCTTGGTGGTGGACGATCTTTCA
GTGAAGACTATTAAGAAGTGAAAGGCTCCCAAATATCAGTTGAAATGGCT
AGAGATAAGCAATCATCTTCATTCTCTGGTGGTTTCAGAGGCCGTGGTAG
AGGAATGAGAAGAGGAAGTGATGACGGTGGTTATAGAGGAAGAGGATTTT
CTTCCCGCGGAGGTGGATATTCTCGAGGTGGGTATGGACGCTCAAGAGAA
TATGATTCAGACAGATCACATGGTGGACGTGATAGTTTTGAACCAAGAGG
TAGAGGTCGTGCAAGAGGTGGTCCAAGAGGAGCCCCCAGATTTGGAGGTG
GTGATAGATATTCAACAGAGGACAGGTATGGTGGAGGTGAAAGATCAGAG
AGAAGACATAGTGACAGGTTTGAACGATATGAAGGAGGAAGTAGATATGA
GGAAAGATATCAAGAAGAAGAAGATGGTTTAGATGATCGTTATTCAAGAG
GTGGTGAAAGAAGAGAACGAAGGGAATGGCATGAAGAAGAGTATGAAGAA
CCTAGAGAAAGAAGATCTTCATTCGGCCGTGGAGGTAGTTCTAGAGGAAG
CTATACTCCACGTGGTAGAGGAGATTTCAGAAGTTCTGATCGTGGGCGAT
CTGAACGTGGAAGCTCACGTGGTGGATTTGCACGTGGTGGTAGTTTCAGC
AGAGGTAGTGGGGATCGTGGTGGCTTTAGCAGACGTGGAGGAGGTGACAG
AGGAGGATATTCTAGTGGTTATGACCGACATGAAAGAGCTCCCAGAGAAA
GCAATAGAGACTGGTATGGTGCTAGTGAGAGACGAAGTGGAGCCACTATA
ATTGACGGAAAAGGTTTTGGGTTTGTTCAATTTGAAACATCAACTGAAGC
AAATGATGCAATCAATGGTGCTAATGGAGCAAAAATATTACATCTTTACT
CAAAATGGCCTCTGATGCAACTACTTTGTTTATTGGACGTTTGGGACCAG
GTGTCACTGATAAAGATCTTTCTAACATTTTTGATAAATATGGAAGAACC
GTCAGTATTAACTGATCACCTTCGTTGTGCTGATGAAGATGGAGGTAGCT
ATCGTGGAAGAGGAGCTGGTCGAGGTGGATTTACACCAAGAGGAAGAGGA
CGTGCGCGTGGAGGGTTTTCAAGCAGAGGAGGATCCCTTGGTGGTGGACG
ATCTTTCAGTGAAGACTATTAAGAAGTGAAAGGCTCCCAAATATCAGTTG
AAATGGCTAGAGATAAGCAATCATCTTCATTCTCTGGTGGTTTCAGAGGC
CGTGGTAGAGGAATGAGAAGAGGAAGTGATGACGGTGGTTATAGAGGAAG
AGGATTTTCTTCCCGCGGAGGTGGATATTCTCGAGGTGGGTATGGACGCT
CAAGAGAATATGATTCAGACAGATCACATGGTGGACGTGATAGTTTTGAA
CCAAGAGGTAGAGGTCGTGCAAGAGGTGGTCCAAGAGGAGCCCCCAGATT
TGGAGGTGGTGATAGATATTCAACAGAGGACAGGTATGGTGGAGGTGAAA
GATCAGAGAGAAGACATAGTGACAGGTTTGAACGATATGAAGGAGGAAGT
AGATATGAGGAAAGATATCAAGAAGAAGAAGATGGTTTAGATGATCGTTA
TTCAAGAGGTGGTGAAAGAAGAGAACGAAGGGAATGGCATGAAGAAGAGT
ATGAAGAACCTAGAGAAAGAAGATCTTCATTCGGCCGTGGAGGTAGTTCT
AGAGGAAGCTATACTCCACGTGGTAGAGGAGATTTCAGAAGTTCTGATCG
TGGGCGATCTGAACGTGGAAGCTCACGTGGTGGATTTGCACGTGGTGGTA
GTTTCAGCAGAGGTAGTGGGGATCGTGGTGGCTTTAGCAGACGTGGAGGA
GGTGACAGAGGAGGATATTCTAGTGGTTATGACCGACATGAAAGAGCTCC
CAGAGAAAGCAATAGAGACTGGTATGGTGCTAGTGAGAGACGAAGTGGAG
CCACTATAATTGACGGAAAAGGTTTTGGGTTTGTTCAATTTGAAACATCA
ACTGAAGCAAATGATGCAATCAATGGTGCTAATGGAGCAAAAATATTACA
TCTTTACTCAAAATGGCCTCTGATGCAACTACTTTGTTTATTGGACGTTT
GGGACCAGGTGTCACTGATAAAGATCTTTCTAACATTTTTGATAAATATG
GAAGAACCGTCAGTATTAACTGATCACCTTCGTTGTGCTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035239	XLOC_035239	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00055990-protein	TCONS_00055990-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_266	supercontig	scaffold_266:193466..201909 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.8589	16.2589	71.5048	87.0553	296.764	224.024	103.951	117.472	47.0233	58.7903	46.726	44.033	66.0127	77.7264	60.5142	80.7778	78.8851	74.5963	18.9544	18.9137	69.1674	66.9618	43.8988	44.2576	78.8427	89.9224	39.4527	58.7083	39.1624	46.7155

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00055990 vs. Swiss-Prot (Human)

BLAST of TCONS_00055990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00055990 (transcript) - C. hemisphaerica