TCONS_00056006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056006
Unique NameTCONS_00056006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056006 ID=TCONS_00056006|Name=TCONS_00056006|organism=Clytia hemisphaerica|type=transcript|length=5852bp
GTGAAAGGTTTCACCAACAACTAAAATGGCTTTATGTTTTGATCGACGAC
CTTGGAATGGAGTTTTAGATTACACTGCCTCAGCGATATGGCCTCAGTCA
GAGATGGGTTCAAGGATCCCTTCGTCCGAACGAATCAATCTCTCACCTCT
CTGCATGTCTGCGGTGCCTTCAGGTATTCAAACGCCGGTAGAACCAGGTA
CCGGTCAAAAGCCACTTCCGCCTTCAGAGTTGGCGTCAGTCACACCTCCG
GTGACCAACAGTAATGGAATTCCCTCAGCGACGCCTCTCCAACAGCTACC
CGGTCATGATGTTAAAGCAAGCAACCGCGGAAAAAGTATTTTAGAGAAAT
TCAAAGGAAACGAACAGTACAAACCAGCCATGGCTGTACAACCTTCTCAA
GACTCCGTCAAGGATTTCACGGGAAGCCGGTGGATTCATTCCGAGATGGG
TTCTCGCATTCCGTCTTCAGAAATGATCAGTTTGTCTCCACTCACCATGT
CTGGAATCCCTTCCGGTATTCAAACACCAGCGGAGCCGAATACTGGATGC
ATTCCGCTAAGTGAAGCGGGTACAAATAACACACTACCGAACGTTAATCA
AACGGAAATTTCCTCTTCTACTGGTGTTCTTGGGGATGAAGAATTTCGGC
CGAACAGTTCACCTGGCGATCACGTGATAAATAAAGATGGCGTCAAACTT
CGACAAAAACGACAAAATCCTCCTCTtggcaacaacaacaacaacaacac
aacTTCTGCTTCGGGAGAAGACGAACATCAAATGTCTGAATACATGAATC
GTATGAAGATTTCAGACGTTCCAAGATTCGATTACGTCGAAGAGGATTCT
GTCAAGAATTACGGTGAACTGTCATCCACACGACAATCTTACGAAAACTT
GAACTACAACGGAGCCTGGTCCAATAATACCTCCggTCTTGTCACACCGT
GCGATCATGGCAGTATATGTGGCGGTATCAGACCATACCGCCCACAGCCG
CCACAAGCTGCGCTGCAAGAAGAGAATGATGGCATCAATCCCAACAGTGA
TCTGAACGAATCAGAAAAGCCAAAGGACGAGCAACAAGTACCATTGGTTG
GCGATGTCAAACCTTCCACGAATCATCAACCGAACACCAAACGTATTCAA
CTAAATCTGGATACGACAGTTTCGACATTCCCCATCAAAGACCATTCCCA
GCCGTCGAACAACAAAGACACGTCATctaccaacaacaacaacaacaacg
caCGGCGTCGCAACTCGACTTCTTCATTAGAGTCTGCTCATTCCAATCGA
ACGGACATCTCAACTGTCGTTAACGCGCCCATGTCCATGCACAACACCGC
CCCTGCATCGCCCGATCCTGATGGTTCAGAAATCAGCGACTCGACGGTCA
GTGAGAATGATGAGAGTGCGGAAGGGACAGCAGGGTACGCTCCTAAACCT
TCTGATTTGACACAGCCACCAAGATGGCATCACACACCTGATACCGATCA
ACAGCCTTCACGAATGGCACAACAAAACGAAATGGTTGCTCGCCAGCAAT
CCGTACAACCTCCTCAAAACGATTTCTCACGCAAAAACCTCATTCAAATG
GCGAAAGAACAGTTTCCAAAACAACAGACACAACCGCCCCTTCATGGCGG
CAACCACCCTACCGCAAACGACCAGATACATCACCATATGCTTCCACCTT
CTCATCCCTCTCAACAACGTTTCAACTACTCTCATCATCATCAACAACAA
CATGGACCTTCTCCCCACTACGGAGGAGGTAGCCACCACCCGATGCACCA
GGACTACCCTCCTCACCACTATGACCACAATCCACACCACCCCTCTTACC
CTAACTATGATCGAGGTGGACTGCGTTACGGCTACTCACCTAACACCAGG
CACCCGCAGCAACCACACCCTCAAGCACATTCGCAGCAACATCGATTCAA
ACAGCCTCTAACCAGGTACCCATCATCAGGTGGATCGCACGACAACCCTG
ACTTTCCGATGCATGGTATCAACCACATGAAGTCACGAATGAACAACGGA
GGTATCTCTGGTCCCCCACATCCCTCTACATTAGGAGCAGGTGGTCCACG
ACCAGGGAGTATGGACATGAGACATAACATGGGAATGAGGCCACAATACA
TGCAGCCTCAGCAACATGGACAACCGAGACCCTACATGCAACAGCATCCG
GGGAACATGCCCCCTTCTAGACCTCCTACTACTATCAATGGTCAAATGAA
TAGCCAAACACAGCATGACTTTTACGGTGATCCACCACCTCCACCCACTA
GTACAGGTGTCCTTCCTCCTCCCGCACAGCAGCAGCCTCTCCCACCTCAA
CAACTACCGCCTACCAGTGCCCATCATCAACACCAGCTTCCAAATCAACC
TCAGCAACAACAGCCTCCGACCACAAGTGCAGAGCCAAAGCCATCAAATG
ATCAAGCATCAGCTGCCAACAAAAACGGAAATCGAACATACAGTGTCACT
AGCCTGGAACCCAATCGGGCTTCTCCTCCACAAAACGACACCTTAGACAC
AGCCAGCGTGGTCAGTTTCGCAAGCATGCCCACTTCACATCAAAACATGG
ATACACGTGTTGATATGATGTCATCTTTGCTAAGCATGCTGGGAACACAT
GATCATGATGATTTGGCGCGAACGTTGCTAGCAATGTCGAGTAACCCTGA
TTCGTGTGTTGCTATGCGACAAAGTCAGTGTGTACCCTTATTGATCAAAC
TTTTGCACACGGAGAATAAGGAGACGGGTGAAGTCAATTGGGGTGCCAGG
CAACGAGCTGGTCGAGCGCTGCACAACATTGTACACTCAGGTAGCGGTGA
TCGAAGAAGCAAACGTGAAGTTCGTGTTCTACACTTCTTGGAAATCATTC
GAAAGCATACGGAAGACATTATGCAAGAGGAAACAGACTCGTTCCAATCC
GACATTCCTATCCAACAAATACGACCGGATCACGGGCCGGGTTCTGCTGT
GGCGGCCATTATGAAACTCTCTTTTGATGAAGAACATAAACTGTCCATTT
GTGAATTAGGAGGATTGCAAAGTGTTTGTGAATTACTGGCAGTTGATTAT
CGTGTCAACAAAGACACCACTGAACCTTCCATCATTTCATTGCGTAAATA
CATCGGTATGATTCTAACCAACTTGACTTATAAGGATGCCAAGAATAAGG
CGGTTCTAGGGAACATGCATAAGACTTTGTTGGCGGTGATTGGCCAGCTT
CGTTTGACAAGCGAAGAGGATCTGGTTCAGGTATTTGCGGTCATCACGCA
GAATATTTCATGGCGTCCTGACGAACGAATGCAACAAACATTGAAAAGTA
TCAATGCAGTTCGCGTTCTCATGATGTGTATTCAACAATTACGCACGGAA
ACTTGCATCCGATCTGTTCTCAGTGCTGTCTGGAATCTCTCCGCTCATAA
TTCCGAGAATAAGGAAGAAATTTGTCGGACGCCCGGCTCGTTGAAATATT
TAACGTACGCCTTGAGTTATCGTTCGCCTACGAATACTTTAAAAGTGATC
GAAAATGCGGGTGGAATTTTACGAAACATTTCCTCTCACATCGCCATCAA
TCCTGAATATCGCCGTATTTTGAGACAAGAAGGTTGTCTACAAACTCTCG
TTTCACACTTACGTTTCCCGAGCACGCGGGTCGTTTCGAACGCGTGCGGT
GTTTTGTGGAATATTTCAGCACGTTTTGTCGAAGATCAAGAAATCCTTTG
GGATCTCGGAGCGGTTTCTATTCTTAAAACGCTGATCAATTCTAAACACA
CCTCTATCGCAGCAAGTTCAACGGCAGCATTACGTAATCTGTTGGCCGTT
AAGCCAGGCAGTAGCGGAACAGACACAGAATCGCAACTTTCTTACAAGCA
CCGCACAAATAGTCTTCCGATGCGTGGACAGTTCCGAAGGGGAGATAAGA
AATATCGTTCGGCGGGTGCCGGCGCCCGTAAAGATCAGATTCGTGGAAAG
AACACACATTCGCACGATGAAGATATTACGACTGATCGCAGCCGACAATT
ACACGAATTGTATGACGATTACCCGCCCTCTTATCGTGACCGAACATTAA
ACGATTCAACGCCACCCATCTTCGAGGAGGGCGTTATTGATCCTCCTCCA
TACGGAAACGGCTTATACGAACAGCACTCAATAAGTTCGGAGAAATCACC
AAGTCAATATTTCTTTCCCGCGCCTGAAGCAGGAAGGCTCCCCATGAGCG
CTCCTATGAATCGTCGGCAGCTGGTCAGAGACAGAGATAGCTCAAGCTCT
TGTTCTTCTTTCTCGCCGAATGATGGTTTCAAGGCTAGTTCGGCCCGTAA
ACAACCTGAAATGTTCCAAACGGTTGACTtgagaaatgaagaaaaaccaC
CAGCNGGCCCGTAAACAACCTGAAATGTTCCAAACGGTTgacttgaaaaa
tgaagaaaaaccaCCAGCACTGAATAATGAAGAGAAAAGTGAGCGAGGTT
CACCAGTTTCACCCAACCTTACGGTCGAATTAAACACTTATGACGATTGC
AAACTTTCCGTTGTCAAGGACGCTGTCATGATTTACCAAGGAACCCCTAA
ACTTCCTATCAAAGCGTCCATAGCAACCAAAGATGGTAAACAAAAACTGC
TAAAACTGACCAGCAAAATGAAACGTCAAAAGAAATCTTTGGACTCCCTT
TCATCCAGAGACTCTTTGAATGAAAAATCTGATGTCGACGGCCCCAAGAA
AAAGGAGAAGGAAACGGCCCCGAAAGAAACTTTCCGCACCAAAACCAAAA
GCCTAAAGCAGAGATTATTGAACAAGTCACATTCATCCGACCTCGCGTTC
GATAAAAACGTCATGAAATCAAACAAACGTTCTCCTTTTGATATTTACTC
CATGTCGAATTTTCCGGACCGTGTGGCGAGCGATCAATGTTTATCCATGA
CAGATCGTTACATTCGTGACATGAACAAACGTCATCACACGGGAGATATA
TATCATGGAAGTTGGTCGTCTTGTGACGTCACGCGGGACGAACCATTTTA
TCCGAATAATGGTCCATCAGAAACAAGATATGCGGATAATTTCCCGCCTC
CCTCGCCGCAGTTGTCACGTGGTGGCGAAAGCTCATTGAAACATAATAAC
ATGCATTCGCATACCTTCTTACAAGAGAATTCTTTTGGTCACGGTCGGCG
GGCAGCGGGTGAAAGCCATCATTCTAGTCATCACCCCATCAATGCGACGA
GCTCAGTAGAAGCGATGCACAAATTAAACATTCATAACGACTCCGCTATC
GAAAGCGATCGttcgaaaacaaacaaaactaaaaaaagtttgttgaagaa
tcctttgaaaaagaaaagcaaaaagaaaacagaagaaCCTTAGCAAAGAC
AATGTACCAATAATGAACCctattaaagattttttctaatatattttttt
ctcttgaaTCATCTCATATTCCTTTTTACCTGAGATGCAATGAAATTATA
GAGCTTTATAGTAGTGATGCTCAATCTTCTCAATCGACAATATAAAATCT
TGCTTTCTAAAACGAAGTCAGCTAACTTTATCCTAAACTAAGTTTTTGAG
CAAAAGTTAGAAGTTACTTTGCAAACATTTCTTCGTTTTCATGTGTTGAT
TGATGGCATTtgattttgtaattattttatttttaatcattttttaccGA
ATTCAGTTTTTAGTCTATCACAATTTTTGTAAGGGGCAGATTgatgtttt
tttcactttgtcaCTACATTTTAGAGAATATTTAAGAAATAGCCTACTAG
TCTTGGAATCGATAAAACACATTTACTTCACTACATTCCTGCGACCATAT
CC
Run BLAST on NCBI

transcript from alignment at scaffold_266:330747..340042-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056006 ID=TCONS_00056006|Name=TCONS_00056006|organism=Clytia hemisphaerica|type=transcript|length=9296bp|location=Sequence derived from alignment at scaffold_266:330747..340042- (Clytia hemisphaerica)
GTGAAAGGTTTCACCAACAACTAAAATGGCTTTATGTTTTGATCGACGAC
CTTGGAATGGAGTTTTAGTACGTAAGATAAGTATAGTTCACTGTACCCTC
GAAAAAGTTTTCTTCACTCTTATTATTCATTTTTGGCCTATCAAGCTCAT
TTTTTCGTTTTTCATTTAGGATTACACTGCCTCAGCGATATGGCCTCAGT
CAGAGATGGGTTCAAGGATCCCTTCGTCCGAACGAATCAATCTCTCACCT
CTCTGCATGTCTGCGGTGCCTTCAGTAAGAACATCTATTCTTCCCTCTCT
TTGTCTGAATCGTATAACGTGAATATCAGAATTTACAATAAAAGATATGT
AGTGCATTTTATATACTTCATCTATGTATATTTCGAAGTTTTGGGGATTT
TAAAAGGATTTTTTGTCCCTTTCTCTGTGTTTTCGAAATTATCGGCCGGC
TATCGATAAGGGTTCCCTCGAATACTTGTATTTCATAAAGTAAATAAAGC
TGAAGACTTAAATTGACCTGAAATTTTGATCGTTAATTTCAGGGTATTCA
AACGCCGGTAGAACCAGGTACCGGTCAAAAGCCACTTCCGCCTTCAGAGT
TGGCGTCAGTCACACCTCCGGTGACCAACAGTAATGGAATTCCCTCAGCG
ACGCCTCTCCAACAGCTACCCGGTCATGATGTTAAAGCAAGCAACCGCGG
AAAAAGTATTTTAGAGAAATTCAAAGGAAACGAACAGTACAAACCAGCCA
TGGCTGTACAACCTTCTCAAGACTCCGTCAAGGTGAGAAAGTTTCAACAC
CACTCTTCTCGAGATCATCAAAAACATTATATTTTACACATTAACTATGT
ATTCTCATACGATTCCAAAAAGACTGTTAATAAATTTCATACGATAGTGT
AAGCGTTCAAAAGCTAATTTGTGGCAAATGATGTTAGAGTATCTTAGCAA
CGAGACTTGGAATTCGAGGCTCGCAATAATTTTACTGATCTTGTTAAAAA
CAAGTACTTGTCCAAGTAAAATTTAAACCTATAAAACTCATGTTTTATCT
TATCTTATTTTTATCAGGATTTCACGGGAAGCCGGTGGATTCATTCCGAG
ATGGGTTCTCGCATTCCGTCTTCAGAAATGATCAGTTTGTCTCCACTCAC
CATGTCTGGAATCCCTTCCGTAAGTCTGGCAGGATTGAAAATATTTTTCA
AACGGATTTCTGTCCTTGGTTGCAGAAAGTTTCAATAGCATTTCTGTCTC
AAAATTCTGCATAATTCAATGGCGGTATAGGCGAATATACTCGTATTAAA
GTGTATTTTTTGAGATTGAAATTTGACTTTATTTATTATGAATGAAACAT
CTACACGAGGAGTGAGTTTATTTACTTCAATAATGTTATTTTTCCATTTC
TTTGCTGAAGGGTATTCAAACACCAGCGGAGCCGAATACTGGATGCATTC
CGCTAAGTGAAGCGGGTACAAATAACACACTACCGAACGTTAATCAAACG
GAAATTTCCTCTTCTACTGGTGTTCTTGGGGATGAAGAATTTCGGGTAAG
TTCGCTTCCCTTTTCTTCTCTTCGTTTGTCACTTTGAATATAGTGAATCT
GATATTTTTTGCGAAGGGGACGGTATCATAAATTCTCTTTACATCCCTTG
CCCGACGAGCTTAATGCGAACATGAGCAGATGTTGACGTTCTCAATCAAG
GGTATTGATTCATCTAAAGCTTTTCAGCATTAACCAAACTGAAAATTATG
GAATGAGATGGTGGAATTTGGTTGGAGAGGTATTTTTTATAGAGAAGACT
ATATGTCACCCTTCTTTCTACTTCAGCCGAACAGTTCACCTGGCGATCAC
GTGATAAATAAAGATGGCGTCAAACTTCGACAAAAACGACAAAATCCTCC
TCTTGGCAACAACAACAACAACAACACAACTTCTGCTTCGGGAGAAGACG
AACATCAAATGTCTGAATACATGAATCGTATGAAGATTTCAGACGTTCCA
AGATTCGATTACGTCGAAGAGGATTCTGTCAAGGTATTTATTTACATCCC
TTATAACTCTTTAGGAGCCTGTACTTCTCGCGTCAGCTTCTCTAAATACT
TTTATCTCCGAGGAGTTTAAGAGAGGAAAAGATTTTTTCTGTGTAAAGGA
GAGGAACTGTTTTCATCTTCGTCTGTTACAAGATTCGAAACCATGTTAAC
AATAATAAGTTTTATATTAATCACTTTTTTTTGTAAGCAACTCCAATTTT
CGGCTCAGGCCTGGAGCTGCTAAGGCTTTTCCGTATTTCAGCTATAAAGT
CGCTTTAGACATTTCGAACCAAAAAAATTTTGTTTTTTATCTCACTTAAC
TGTCCAAAATACCTCAAATTTGGTATTCAAATACTATCGGTACACATTTT
AATGCCAAATGATGCCGAAATGCCTCTTTTTTATGTATTTTTGGTTGCTT
TCCCGTCCCATGCTCAGTTTCAGGGCTACGTTGGTAAGGCCAAGTTGCTT
AATTCTTTTGGCCAATCTCAAGGCTGGAAATCTATAATCTTGAAACGCAT
CTTAACTCTGTATTTTCAGAGAATGTTTAATCTTTCATTTTAGTTTTCTT
TGATTTTACAATGTATTCGGGGAAAAAACTGAACAAAATTCTATCTTTAA
TAAAGAAAAACTCGTTATTATATATTTCAATTTTCTTTACCTAAATTCTT
CATTGCGTTTCTTCAAAATATTTTGAATGTATTATTATTATTATTATACA
TTAAATAAAATAAATGATTCTTGTTTATATCTGTCCTGTTTTTTTCCAAA
CACACTGTAGATTGAAGACTGAAACCACTGTCAGTATTATATTTATCATT
TCATTTAGAATTACGGTGAACTGTCATCCACACGACAATCTTACGAAAAC
TTGAACTACAACGGAGCCTGGTCCAATAATACCTCCGTAAGTCTTTAAGC
TTCACCTTTTTGTGTTCTTTTTGATTTAGTTCAACACATGGCGCCCTTAA
TCTTCCGGCCTTACATGAGTTCAGCGACTTTGTTTTTTTGGGAGCTAGAT
TTTTCGAAGTCGTCGCATTGATGCTCGTACAAGACATACCCCACAGAACA
AGATTTATAGATTTATATATAGAAAAATGAACTTTTGTTTTGTTTTGTGA
AGCTTGATAGTTTTTCAGCCTCAAGAACAATCAAAAATACAACAATCCAA
GATAGAAATTTTTCTTTGCTTAGGGTCTTGTCACACCGTGCGATCATGGC
AGTATATGTGGCGGTATCAGACCATACCGCCCACAGCCGCCACAAGCTGC
GCTGCAAGAAGAGAATGATGGCATCAATCCCAACAGTGATCTGAACGAAT
CAGAAAAGGTGAGCGATTTCAAACAACTTGGGATGCTTTGGAGATTCGGC
CTGCTGAATTCTTTTAAGGCCACTACTGAGTTAAAACTTTTGATATGGGG
TATCTCGATTTTGGGAAATAGTTGAGCAAAAGAAGCTAAGGAGCCGATTT
CTTAGGATCCACAGGGTAAGTTTTTGATTGATGTATTTCGTGGAGTTCAA
TTTTTATGCAGTTACATTTTCTTCTTCAGCCAAAGGACGAGCAACAAGTA
CCATTGGTTGGCGATGTCAAACCTTCCACGAATCATCAACCGAACACCAA
ACGTATTCAACTAAATGTAAGTCGGATCTCCTCACTGTTTCTTACATAGT
TACCGGTTCACTGAAGATTGCATGGATGGCATGAAACTTTGAGTATGAAA
ATTACTTAAGTCTTTTTCTTTACTCAAACTAGTATAGTTACCGGTAACAA
TCCAAAAGCCTGCACAACAATCAGATCACGTTACATGCCACTGATTGGCG
GATTTGTCTCAATTGCATTATAGTTTTGACATTTGACCAATCAGATAGAT
TAGATTGTTAGATTTAGATTATTAGCGGTAACTATGGTATTGCATAAATG
TGAATCCCTTATTATTCGTTGTAATCATTTACATTATTTATTTTACAAGT
TTATATTCTTTTTGTCCACAGCTGGATACGACAGTTTCGACATTCCCCAT
CAAAGACCATTCCCAGCCGTCGAACAACAAAGACACGTCATCTACCAACA
ACAACAACAACAACGCACGGCGTCGCAACTCGACTTCTTCATTAGAGTCT
GCTCATTCCAATCGAACGGACATCTCAACTGTCGTTAACGCGCCCATGTC
CATGCACAACACCGCCCCTGCATCGCCCGATCCTGATGGTTCAGAAATCA
GCGACTCGACGGTCAGTGAGAATGATGAGAGTGCGGAAGGGACAGCAGGG
TACGCTCCTAAACCTTCTGATTTGACACAGCCACCAAGATGGCATCACAC
ACCTGATACCGATCAACAGCCTTCACGAATGGCACAACAAAACGAAATGG
TTGCTCGCCAGCAATCCGTACAACCTCCTCAAAACGATTTCTCACGCAAA
AACCTCATTCAAATGGCGAAAGAACAGTTTCCAAAACAACAGACACAACC
GCCCCTTCATGGCGGCAACCACCCTACCGCAAACGACCAGATACATCACC
ATATGCTTCCACCTTCTCATCCCTCTCAACAACGTTTCAACTACTCTCAT
CATCATCAACAACAACATGGACCTTCTCCCCACTACGGAGGAGGTAGCCA
CCACCCGATGCACCAGGACTACCCTCCTCACCACTATGACCACAATCCAC
ACCACCCCTCTTACCCTAACTATGATCGAGGTGGACTGCGTTACGGCTAC
TCACCTAACACCAGGCACCCGCAGCAACCACACCCTCAAGCACATTCGCA
GCAACATCGATTCAAACAGCCTCTAACCAGGTACGAAAATTTTACAACTA
CCCTAACTTGTAAATTTTCTGAAGATGCTTATTCAAGGAATTTATGAAGG
GTAATGTTTTAATAATTTTTCATCATAATTATGAGTCATTATCTTCAGGT
ACCCATCATCAGGTGGATCGCACGACAACCCTGACTTTCCGATGCATGGT
ATCAACCACATGAAGTCACGAATGAACAACGGAGGTATCTCTGGTCCCCC
ACATCCCTCTACATTAGGAGCAGGTGGTCCACGACCAGGGAGTATGGACA
TGAGACATAACATGGGAATGAGGCCACAATACATGCAGCCTCAGCAACAT
GGACAACCGAGACCCTACATGCAACAGCATCCGGGGAACATGCCCCCTTC
TAGACCTCCTACTACTATCAATGGTCAAATGAATAGCCAAACACAGCATG
ACTTTTACGGTGATCCACCACCTCCACCCACTAGTACAGGTGTCCTTCCT
CCTCCCGCACAGCAGCAGCCTCTCCCACCTCAACAACTACCGCCTACCAG
TGCCCATCATCAACACCAGCTTCCAAATCAACCTCAGCAACAACAGCCTC
CGACCACAAGTGCAGAGGTATTTGAATATCCTAAACTCAATATCACTGCA
TAATTTAACCTTGAAAGGGCAACCAACAATTTGAAAATCGCAGAAGAATA
GTGCAATCGGTTGTAGCCGGTCATCCCTTTGACTCTCAAATCAGTTCATA
AATTGGTCCCTGAAGTATCAATATTCCATATTTTAAGATATAGAGAATAG
AAATTGTGTAATGAGGCTTTTAGGCTTCAACCAAATCATGCCTTTGCTAT
TTTTTTAGCCAAAGCCATCAAATGATCAAGCATCAGCTGCCAACAAAAAC
GGAAATCGAACATACAGTGTCACTAGCCTGGAACCCAATCGGGCTTCTCC
TCCACAAAACGACACCTTAGACACAGCCAGCGTGGTCAGTTTCGCAAGCA
TGCCCACTTCACATCAAAACATGGATACACGTGTTGATATGATGTCATCT
TTGCTAAGCATGCTGGGAACACATGATCATGATGATTTGGCGCGAACGTT
GCTAGCAATGTCGAGTAACCCTGATTCGTGTGTTGCTATGCGACAAAGTC
AGTGTGTACCCTTATTGATCAAACTTTTGCACACGGAGAATAAGGAGACG
GGTGAAGTCAATTGGGGTGCCAGGCAACGAGCTGGTAAGAATAAGCATTT
TCTTAGCCGTTATTTTTTTACCTTAAGTGAATTAATTTTTGCGCGGAATT
TTAACCAAAATGCGAGGACTGAAATTAATCCAGGTGAAATTTAATCTATT
TAAGGATGAATATATTTGCCTTGATTTAGCTTTTTTCTCCATGCACAAAA
TGGATTATTCTCGTTATCTATGAGTAAAAAGAAGTTAACTTTCTATTTTT
ACAGGTCGAGCGCTGCACAACATTGTACACTCAGGTAGCGGTGATCGAAG
AAGCAAACGTGAAGTTCGTGTTCTACACTTCTTGGAAATCATTCGAAAGC
ATACGGAAGACATTATGCAAGAGGAAACAGACTCGTTCCAATCCGACATT
CCTATCCAACAAATACGACCGGATCACGGGCCGGGTTCTGCTGTGGCGGC
CATTATGAAACTCTCTTTTGATGAAGAACATAAACTGTCCATTTGTGAAT
TAGGAGGATTGCAAAGTGTTTGTGAATTACTGGCAGTTGATTATCGTGTC
AACAAAGACACCACTGAACCTTCCATCATTTCATTGCGTAAATACATCGG
TATGATTCTAACCAACTTGACTTATAAGGATGCCAAGAATAAGGCGGTTC
TAGGGAACATGCATAAGACTTTGTTGGCGGTGATTGGCCAGCTTCGTTTG
ACAAGCGAAGAGGATCTGGTTCAGGTATTTGCGGTCATCACGCAGAATAT
TTCATGGCGTCCTGACGAACGAATGCAACAAACATTGAAAAGTATCAATG
CAGTTCGCGTTCTCATGATGTGTATTCAACAATTACGCACGGAAACTTGC
ATCCGATCTGTTCTCAGTGCTGTCTGGAATCTCTCCGCTCATAATTCCGA
GAATAAGGAAGAAATTTGTCGGACGCCCGGCTCGTTGAAATATTTAACGT
ACGCCTTGAGTTATCGTTCGCCTACGAATACTTTAAAAGTGATCGAAAAT
GCGGGTGGAATTTTACGAAACATTTCCTCTCACATCGCCATCAATCCTGA
ATATCGCCGTATTTTGAGACAAGAAGGTTGTCTACAAACTCTCGTTTCAC
ACTTACGTTTCCCGAGCACGCGGGTCGTTTCGAACGCGTGCGGTGTTTTG
TGGAATATTTCAGCACGTTTTGTCGAAGATCAAGAAATCCTTTGGGATCT
CGGAGCGGTTTCTATTCTTAAAACGCTGATCAATTCTAAACACACCTCTA
TCGCAGCAAGTTCAACGGCAGCATTACGTAATCTGTTGGCCGTTAAGCCA
GGCAGTAGCGGAACAGACACAGAATCGCAACTTTCTTACAAGCACCGCAC
AAATAGTCTTCCGATGCGTGGACAGTTCCGAAGGGGAGATAAGAAATATC
GTTCGGCGGGTGCCGGCGCCCGTAAAGATCAGATTCGTGGAAAGAACACA
CATTCGCACGATGAAGATATTACGACTGATCGCAGCCGACAATTACACGA
ATTGTATGACGATTACCCGCCCTCTTATCGTGACCGAACATTAAACGATT
CAACGCCACCCATCTTCGAGGAGGGCGTTATTGATCCTCCTCCATACGGA
AACGGCTTATACGAACAGCACTCAATAAGTTCGGAGAAATCACCAAGTCA
ATATTTCTTTCCCGCGCCTGAAGCAGGAAGGCTCCCCATGAGCGCTCCTA
TGAATCGTCGGCAGCTGGTCAGAGACAGAGATAGCTCAAGCTCTTGTTCT
TCTTTCTCGCCGAATGATGGTTTCAAGGCTAGTTCGGCCCGTAAACAACC
TGAAATGTTCCAAACGGTTGACTTGAGAAATGAAGAAAAACCACCAGCNG
GCCCGTAAACAACCTGAAATGTTCCAAACGGTTGACTTGAAAAATGAAGA
AAAACCACCAGCACTGAATAATGAAGAGAAAAGTGAGCGAGGTTCACCAG
TTTCACCCAACCTTACGGTCGAATTAAACACTTATGACGATTGCAAACTT
TCCGTTGTCAAGGACGCTGTCATGATTTACCAAGGAACCCCTAAACTTCC
TATCAAAGCGTCCATAGCAACCAAAGATGGTAAACAAAAACTGCTAAAAC
TGACCAGCAAAATGAAACGTCAAAAGAAATCTTTGGACTCCCTTTCATCC
AGAGACTCTTTGAATGAAAAATCTGATGTCGACGGCCCCAAGAAAAAGGA
GAAGGAAACGGCCCCGAAAGAAACTTTCCGCACCAAAACCAAAAGCCTAA
AGCAGAGATTATTGAACAAGTCACATTCATCCGACCTCGCGTTCGATAAA
AACGTCATGAAATCAAACAAACGTTCTCCTTTTGATATTTACTCCATGTC
GAATTTTCCGGACCGTGTGGCGAGCGATCAATGTTTATCCATGACAGATC
GTTACATTCGTGACATGAACAAACGTCATCACACGGGAGATATATATCAT
GGAAGTTGGTCGTCTTGTGACGTCACGCGGGACGAACCATTTTATCCGAA
TAATGGTCCATCAGAAACAAGATATGCGGATAATTTCCCGCCTCCCTCGC
CGCAGTTGTCACGTGGTGGCGAAAGCTCATTGAAACATAATAACATGCAT
TCGCATACCTTCTTACAAGAGAATTCTTTTGGTCACGGTCGGCGGGCAGC
GGGTGAAAGCCATCATTCTAGTCATCACCCCATCAATGCGACGAGCTCAG
TAGAAGCGATGCACAAATTAAACATTCATAACGACTCCGCTATCGAAAGC
GATCGTTCGAAAACAAACAAAACTAAAAAAAGTTTGTTGAAGAATCCTTT
GAAAAAGAAAAGCAAAAAGAAAACAGAAGAACCTTAGCAAAGACAATGTA
CCAATAATGAACCCTATTAAAGATTTTTTCTAATATATTTTTTTCTCTTG
AATCATCTCATATTCCTTTTTACCTGAGATGCAATGAAATTATAGAGCTT
TATAGTAGTGATGCTCAATCTTCTCAATCGACAATATAAAATCTTGCTTT
CTAAAACGAAGTCAGCTAACTTTATCCTAAACTAAGTTTTTGAGCAAAAG
TTAGAAGTTACTTTGCAAACATTTCTTCGTTTTCATGTGTTGATTGATGG
CATTTGATTTTGTAATTATTTTATTTTTAATCATTTTTTACCGAATTCAG
TTTTTAGTCTATCACAATTTTTGTAAGGGGCAGATTGATGTTTTTTTCAC
TTTGTCACTACATTTTAGAGAATATTTAAGAAATAGCCTACTAGTCTTGG
AATCGATAAAACACATTTACTTCACTACATTCCTGCGACCATATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035247XLOC_035247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056006-exon-scaffold_266-1575043694:339976..340042TCONS_00056006-exon-scaffold_266-1575043694:339976..340042Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:339769..339873TCONS_00056006-exon-scaffold_266-1575043694:339769..339873Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:339261..339500TCONS_00056006-exon-scaffold_266-1575043694:339261..339500Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:338874..338975TCONS_00056006-exon-scaffold_266-1575043694:338874..338975Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:338498..338632TCONS_00056006-exon-scaffold_266-1575043694:338498..338632Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:338010..338216TCONS_00056006-exon-scaffold_266-1575043694:338010..338216Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:337107..337184TCONS_00056006-exon-scaffold_266-1575043694:337107..337184Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:336685..336819TCONS_00056006-exon-scaffold_266-1575043694:336685..336819Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:336377..336463TCONS_00056006-exon-scaffold_266-1575043694:336377..336463Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:335213..336021TCONS_00056006-exon-scaffold_266-1575043694:335213..336021Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:334626..335094TCONS_00056006-exon-scaffold_266-1575043694:334626..335094Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:334009..334384TCONS_00056006-exon-scaffold_266-1575043694:334009..334384Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1575043694:330747..333788TCONS_00056006-exon-scaffold_266-1575043694:330747..333788Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:339976..340042TCONS_00056006-exon-scaffold_266-1510915933:339976..340042Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:339769..339873TCONS_00056006-exon-scaffold_266-1510915933:339769..339873Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:339261..339500TCONS_00056006-exon-scaffold_266-1510915933:339261..339500Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:338874..338975TCONS_00056006-exon-scaffold_266-1510915933:338874..338975Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:338498..338632TCONS_00056006-exon-scaffold_266-1510915933:338498..338632Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:338010..338216TCONS_00056006-exon-scaffold_266-1510915933:338010..338216Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:337107..337184TCONS_00056006-exon-scaffold_266-1510915933:337107..337184Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:336685..336819TCONS_00056006-exon-scaffold_266-1510915933:336685..336819Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:336377..336463TCONS_00056006-exon-scaffold_266-1510915933:336377..336463Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:335213..336021TCONS_00056006-exon-scaffold_266-1510915933:335213..336021Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:334626..335094TCONS_00056006-exon-scaffold_266-1510915933:334626..335094Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:334009..334384TCONS_00056006-exon-scaffold_266-1510915933:334009..334384Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1510915933:330747..333788TCONS_00056006-exon-scaffold_266-1510915933:330747..333788Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:339976..340042TCONS_00056006-exon-scaffold_266-1491911889:339976..340042Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:339769..339873TCONS_00056006-exon-scaffold_266-1491911889:339769..339873Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:339261..339500TCONS_00056006-exon-scaffold_266-1491911889:339261..339500Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:338874..338975TCONS_00056006-exon-scaffold_266-1491911889:338874..338975Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:338498..338632TCONS_00056006-exon-scaffold_266-1491911889:338498..338632Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:338010..338216TCONS_00056006-exon-scaffold_266-1491911889:338010..338216Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:337107..337184TCONS_00056006-exon-scaffold_266-1491911889:337107..337184Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:336685..336819TCONS_00056006-exon-scaffold_266-1491911889:336685..336819Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:336377..336463TCONS_00056006-exon-scaffold_266-1491911889:336377..336463Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:335213..336021TCONS_00056006-exon-scaffold_266-1491911889:335213..336021Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:334626..335094TCONS_00056006-exon-scaffold_266-1491911889:334626..335094Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:334009..334384TCONS_00056006-exon-scaffold_266-1491911889:334009..334384Clytia hemisphaericaexon
TCONS_00056006-exon-scaffold_266-1491911889:330747..333788TCONS_00056006-exon-scaffold_266-1491911889:330747..333788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:330747..340042 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1494	1.43031	1.88865	3.05143	7.53134	5.33154	4.6552	5.48215	2.57408	4.19432	3.57247	1.80425	2.23673	0.36903	1.12425	2.345	2.88948	2.98401	2.64237	4.42012	2.57009	1.43317	6.58767	5.82544	9.02263	8.15646	8.79233	9.22547	10.0874	7.68256
Blast
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BLAST of TCONS_00056006 vs. Swiss-Prot (Human)
Match: APC (Adenomatous polyposis coli protein OS=Homo sapiens GN=APC PE=1 SV=2)

HSP 1 Score: 437.187 bits (1123), Expect = 3.882e-124
Identity = 225/440 (51.14%), Postives = 304/440 (69.09%), Query Frame = 2 
Query: 2582 TSHQNMDTRVDMMSSLLSMLGTHDHDDLARTLLAMSSNPDSCVAMRQSQCVPLLIKLLHTENKET-----GEVNWGARQRAGRALHNIVHSGSGDRRSKREVRVLHFLEIIRKHTEDIMQEET------DSFQSDIPI---QQIRPDHGPGSAVAAIMKLSFDEEHKLSICELGGLQSVCELLAVDYRVNKDTTEPSIISLRKYIGMILTNLTYKDAKNKAVLGNMHKTLLAVIGQLRLTSEEDLVQVFAVITQNISWRPDERMQQTLKSINAVRVLMMCIQQLRTETCIRSVLSAVWNLSAHNSENKEEICRTPGSLKYLTYALSYRSPTNTLKVIENAGGILRNISSHIAINPEYRRILRQEGCLQTLVSHLRFPSTRVVSNACGVLWNISARFVEDQEILWDLGAVSILKTLINSKHTSIAASSTAALRNLLAVKPG 3859
            TSH  + T+V+M+ SLLSMLGTHD DD++RTLLAMSS+ DSC++MRQS C+PLLI+LLH  +K++        +  AR RA  ALHNI+HS   D+R +RE+RVLH LE IR + E   + +       D  ++ +P     QI P      AV  +MKLSFDEEH+ ++ ELGGLQ++ ELL VD  +   T +   I+LR+Y GM LTNLT+ D  NKA L +M   + A++ QL+  SE DL QV A + +N+SWR D   ++TL+ + +V+ LM C  +++ E+ ++SVLSA+WNLSAH +ENK +IC   G+L +L   L+YRS TNTL +IE+ GGILRN+SS IA N ++R+ILR+  CLQTL+ HL+  S  +VSNACG LWN+SAR  +DQE LWD+GAVS+LK LI+SKH  IA  S AALRNL+A +P 
Sbjct:  305 TSH--LGTKVEMVYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICP------AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 735
The following BLAST results are available for this feature:
BLAST of TCONS_00056006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APC3.882e-12451.14Adenomatous polyposis coli protein OS=Homo sapiens... [more]
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