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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056024 ID=TCONS_00056024|Name=TCONS_00056024|organism=Clytia hemisphaerica|type=transcript|length=2829bpRun BLAST on NCBI protein sequence of Asparaginase protein >TCONS_00056024-protein ID=TCONS_00056024-protein|Name=Asparaginase protein|organism=Clytia hemisphaerica|type=polypeptide|length=654bp MLHSTQSGKVYENPLSGRKVARVLVIYTGGTIGMKDNGTGGYTVVPNYFARun BLAST on NCBI transcript from alignment at scaffold_266:399586..410866- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056024 ID=TCONS_00056024|Name=TCONS_00056024|organism=Clytia hemisphaerica|type=transcript|length=11281bp|location=Sequence derived from alignment at scaffold_266:399586..410866- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_266:399586..410866- >TCONS_00056024 ID=TCONS_00056024|Name=TCONS_00056024|organism=Clytia hemisphaerica|type=CDS|length=13755bp|location=Sequence derived from alignment at scaffold_266:399586..410866- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056024 vs. Swiss-Prot (Human)
Match: LPP60 (60 kDa lysophospholipase OS=Homo sapiens GN=ASPG PE=2 SV=3) HSP 1 Score: 433.721 bits (1114), Expect = 6.318e-140 Identity = 236/564 (41.84%), Postives = 344/564 (60.99%), Query Frame = 3
Query: 345 RVLVIYTGGTIGMKDNGTGGYTVVPNYFAQALKRLPMLYDEDFAES-GMPELSNECEMNPDLPYCKYSKLVMPMSKMGVRVVYYIKELDPILDSSNMSMEHWTMIAKVVKENYDYFDSFVILHGTDTMAYTASALSYMFENLDKTVVLTGSQIPIFEQRNDGRSNFIGALVIAGHFIIPEVTLFFNNKLFRGNRSQKVSASDLDAFDSPNLPPLAKLGTDIEVAWDAVFPKTSMLPFHLHDKMSENVGLLQLFPGINAQIVRAFLSAPMEGIVIESFGSGNIPSNRPDLVKEFKEAAERGVLMLNITQCARGTVTDAYAAGRVLFEIGVIPGYDMTPEAALAKMAYVLSKKEITHSQRREFLEKNIRGEMTFPKT-HKQFSMKDGGLIQTVAKTLSLGSQQEMNSVRKTLLPVLLTCAAKAGDLNSIKDLVDQGANLNEPSDYDGKTSLHLAAAEGHVNVVQYLLLHGASYFVRDRRGRTPLFDAIRNKNSRIVDMLISSGANFDQDNMEVA-RELSIAATDNDVERLRLWLRCNVNMNISDLEGRSPLHVAVLKGNKEAVKFL 2027
R+L +YTGGTIGM+ G V A L+ LPM +DE+ A + G+ E LV+P + R++Y + E P+ DSS+M++ W +A+ +K +Y+ + FV++HGTDTMA+ AS LS+M ENL KTV+LTG+Q+PI +DGR N +GAL++AG ++IPEV LFF N+LFRGNR+ KV A AF SPNL PLA +G DI + + V +H M ++VGLL+L+PGI A +VRAFL P++G+V+E+FGSGN P+ +PDL++E + A ERG++++N T C +G VT YAAG + GVI G+DMT EAALAK++YVL + ++ R+E L K++RGEMT P ++ S++ L V+ LSL QE +++R L+P L AA AGD+ +++ LV+ G++L D++G+T LH AA GH V LL G RD G +PL A+R ++ ++ +L +GA+ +E A EL A D+E L++W + ++ +G S LHVA GN V FL
Sbjct: 10 RLLAVYTGGTIGMRSEL--GVLVPGTGLAAILRTLPMFHDEEHARARGLSE----------------DTLVLPPASRNQRILYTVLECQPLFDSSDMTIAEWVCLAQTIKRHYEQYHGFVVIHGTDTMAFAASMLSFMLENLQKTVILTGAQVPIHALWSDGRENLLGALLMAGQYVIPEVCLFFQNQLFRGNRATKVDARRFAAFCSPNLLPLATVGADITINRELVRKVDGKAGLVVHSSMEQDVGLLRLYPGIPAALVRAFLQPPLKGVVMETFGSGNGPT-KPDLLQELRVATERGLVIVNCTHCLQGAVTTDYAAGMAMAGAGVISGFDMTSEAALAKLSYVLGQPGLSLDVRKELLTKDLRGEMTPPSVEERRPSLQGNTLGGGVSWLLSLSGSQEADALRNALVPSLACAAAHAGDVEALQALVELGSDLGL-VDFNGQTPLHAAARGGHTEAVTMLLQRGVDVNTRDTDGFSPLLLAVRGRHPGVIGLLREAGASLSTQELEEAGTELCRLAYRADLEGLQVWWQAGADLGQPGYDGHSALHVAEAAGNLAVVAFL 553 The following BLAST results are available for this feature:
BLAST of TCONS_00056024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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