TCONS_00056039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056039
Unique NameTCONS_00056039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056039 ID=TCONS_00056039|Name=TCONS_00056039|organism=Clytia hemisphaerica|type=transcript|length=247bp
ACTTGTCAGCCAAGTTCAAGTAGGACGATCAGACGTTTGCGGTCCGAAAC
AAGTTTAGGAAATCCGACAGGTCCACGATTTCGGTTTTTTTGACATTGGA
GTGCTAAATATATAGTTTATATATAGTTATATAGTTTAGTCTGTGTGGGA
GAATTGATGATGGTGGGGTCAACCTTCGGGCACCGTTTATGTACGGTTGG
CTTGGCAACATCTGACAGGGCAAACATACACCCCGAATGCAtcatgt
Run BLAST on NCBI

transcript from alignment at scaffold_266:158654..158900

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056039 ID=TCONS_00056039|Name=TCONS_00056039|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at scaffold_266:158654..158900 (Clytia hemisphaerica)
acatgaTGCATTCGGGGTGTATGTTTGCCCTGTCAGATGTTGCCAAGCCA
ACCGTACATAAACGGTGCCCGAAGGTTGACCCCACCATCATCAATTCTCC
CACACAGACTAAACTATATAACTATATATAAACTATATATTTAGCACTCC
AATGTCAAAAAAACCGAAATCGTGGACCTGTCGGATTTCCTAAACTTGTT
TCGGACCGCAAACGTCTGATCGTCCTACTTGAACTTGGCTGACAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035263XLOC_035263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056039-exon-scaffold_266-1491911889:158654..158900TCONS_00056039-exon-scaffold_266-1491911889:158654..158900Clytia hemisphaericaexon
TCONS_00056039-exon-scaffold_266-1510915933:158654..158900TCONS_00056039-exon-scaffold_266-1510915933:158654..158900Clytia hemisphaericaexon
TCONS_00056039-exon-scaffold_266-1575043694:158654..158900TCONS_00056039-exon-scaffold_266-1575043694:158654..158900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_266supercontigscaffold_266:158654..158900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.784027	0.91033	1.78123	1.08424	0.85678	3.10101	2.90313	9.48522	6.7137	23.6222	3.74822	17.6456	25.5441	43.3711	56.8325	41.0421	38.355	52.9895	31.3023	20.2112	17.0625	41.4833	38.5524	105.313	69.3362	15.4342	36.4733	45.5113	45.4596
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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