TCONS_00056061 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056061
Unique Name	TCONS_00056061
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1110

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_267:1805..5533+
coding sequence from alignment at scaffold_267:1805..5533+

transcript sequence

>TCONS_00056061 ID=TCONS_00056061|Name=TCONS_00056061|organism=Clytia hemisphaerica|type=transcript|length=1110bp
AATCTTGAAGCGAAACATGGCGTGTCGGGTTTTCACGATGCCCAAGAAGA
ACTCGAGAAAGTTTCAACTATGAAAGGTGAACTAGATGAGAAGAAAGGCA
AAACATTGGAAGAAATGTCTCAATTGGTGGTTCAACTAACGAACAGTATC
TCAGAGAAGAAGAATTCATTAGCTCCTGTCATCAAAGAATTGAGACCGTT
ACGTCAACAAGCTCAGGAGTTGTCTGTGGAGTACGAAGAACGAAAAGGAA
CTTATGAAACAACTGCTGCTGGCCTCGAAAGCAACATGTCTAAACTTGAC
CAGGAGGTTAAAGCACTTCGCGAAGAGGTTTTGGCGGAAGAAAGTCGTTA
CCATTACATGGAATCCATGATCGAGGTATTGGAGGTCCAACAACAGCGTA
TCGACGAAGAAATTAAATCTTATGTCAACACTGATGGTTCCAAGAAATCT
CTCAGGGATAAATATTCACAGAGGATTCATGAACAAGAAGTATTGGGAAA
GGTCAGTTTGCTTCTCCTNAAATATTCACAGAGGATTCACGAACAAGAAG
TATTGGGAAAGCAATTACGTGAGAAGCAGAAATATCTCCGAGAAAATCAT
GCTCCCAATATGCGCCAAATGAAAATGTGGACTGATCTGACGCAACTGTT
GAAGTGCAAGAAAGAAAGCTTGAGCGGACCAACAACAAACACGGTTGAAG
ATCCGGCTCTGTACGATGAACAAGACCATctcgttctgtaaaatacatgc
ACTTGAGGTTTTTAATACAAGGCCATCTTGAATTCTTTTATTTCACACGC
TATAagacttttttcgaaaaatgacgACCATACGCTTCTTTTTGTAATCA
gtcaaattgtaaattttttttgatttcatttttaactgtaaattttttgg
tttaatttaTATATTGTAACATCAAGTTTTTGTTCATTGTGCACActata
aaagataaaaaaatatatcagcAAACAAGATTAAAACGTGTCAGTTCTCA
CCTGAACGAAGTCTAAacataagcataaattaaggctgaaaatgagattt
tgttaAGCATACTcttgggtgcctaataaacgtacagaccaaaataaacg
tacaggaggg

Run BLAST on NCBI

protein sequence of TCONS_00056061-protein

>TCONS_00056061-protein ID=TCONS_00056061-protein|Name=TCONS_00056061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=246bp
NLEAKHGVSGFHDAQEELEKVSTMKGELDEKKGKTLEEMSQLVVQLTNSI
SEKKNSLAPVIKELRPLRQQAQELSVEYEERKGTYETTAAGLESNMSKLD
QEVKALREEVLAEESRYHYMESMIEVLEVQQQRIDEEIKSYVNTDGSKKS
LRDKYSQRIHEQEVLGKVSLLLXKYSQRIHEQEVLGKQLREKQKYLRENH
APNMRQMKMWTDLTQLLKCKKESLSGPTTNTVEDPALYDEQDHLVL

Run BLAST on NCBI

transcript from alignment at scaffold_267:1805..5533+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056061 ID=TCONS_00056061|Name=TCONS_00056061|organism=Clytia hemisphaerica|type=transcript|length=3729bp|location=Sequence derived from alignment at scaffold_267:1805..5533+ (Clytia hemisphaerica)
AATCTTGAAGCGAAACATGGCGTGTCGGGTTTTCACGATGCCCAAGAAGA
ACTCGAGAAAGTTTCAACTATGAAAGGTGAACTAGATGAGAAGAAAGGCA
AAACATTGGAAGAAATGTCTCAATTGGTATGCTGACTTtatattattttc
cttttcttttccgGGGGACGAGTTTTGCACAATTGACGATGTTTTAGGTC
AGAGGGATATAGGGGCATATAGAATGGATGGcatcaaaaatattaaaatc
caGGTTTTATTCTCAAATTTGGTGAGTTAAAAAGTGAACAATGAATTGCA
CCGGGGAGCACTtagtaccgagtttatgtatgtgtgtttttcagcgacag
AGACAGTAAGGTTCaaatttgactagatcatgaccagctgagaacgacgg
taaatcagcacttttaccgtcctcgattttgcggggcagaactgcgggtt
attccaaatcgcttcagtcactttaccgtcctcaaaagtgcaaatatata
aacTCGCTAGTGGTACGCCGCCTGACAGTGCTGACGGAGGTTTGGTGATT
GCTACCAATGTCGCAATAGATGGTTTTAAGATATTATCTCTGATAATGTG
GCAATGATAAACAATAATTGTTTTGGAAACGCGTGACAAAATGTAGACAA
TTTAGACATGATTGAccattgtttttcattttgcaGGTGGTTCAACTAAC
GAACAGTATCTCAGAGAAGAAGAATTCATTAGCTCCTGTCATCAAAGAAT
TGAGACCGTTACGTCAACAAGCTCAGGTAACCCTTTGAAAAGTATTTCTT
CTTGCTTCCTCTCGAATTTTCTGTCGGTTAAATCATCACATTACAGGTAC
AAAGGATGATCGACACAATTTTCATGAGAAGGATCAATTCTGTTatgata
ttttaattttgagtGGCATCAGCAGCATAACGTTGACTACTTTTTTGGCC
ACGCATGATAGCACAATAGATAACTATTTTTGAGCTCCTTCTTTTCTCCA
TCTTTTTCTTAGACATAAAAGGCTGAGGGGTATATTACCGGAAAGGATTC
TTACAGGTCTTGGTAAATATTTTCGATAGAAATGGAGAAATTGGTGCTAA
ATTCATGTGCCAAATTCATCTAGTGCGTCAGTCAATGCTTCTGTTGAACA
TGAAATTTCTATTGAGGACGAACTGCAGTAACTCTCGTTTACTTCCTTAG
GAGTTGTCTGTGGAGTACGAAGAACGAAAAGGAACTTATGAAACAACTGC
TGCTGGCCTCGAAAGCAACATGTCTAAACTTGACCAGGTAAATGATCGAT
GTGTAATACTTTGGAGATTACAATGTTGGATACGGGAATATAAGATATAA
AAACTTTCTCTTGTAAAGTATTTCAACGCAAAGTAAAAGCAACTTGTTGG
CAAAGGATTTTTTAATCGTTCTCTTAGAACTTCTATAGAACAAGCAGTTT
TTAGGTAGTAAATGAGACCTTTTGTTCGAAATACTAATTTTCTTCGCTGT
AGGAGGTTAAAGCACTTCGCGAAGAGGTTTTGGCGGAAGAAAGTCGTTAC
CATTACATGGAATCCATGATCGAGGTATCCTTTCTTTtcttactttcatt
tttatcggTAGGACACATTCAGGGCACGAACTGAAAATCGAAATAATCAC
TATACAGTCGACTCTTTCCAATTCGATCTTCGCAAATATTCTTTATTCGa
atcaaacaaagattcttaTTATGGTAATGCTTTGACGGCTGACAGGACCA
TTCTTTATGGCTTTGATTACGAAGGCTTTTGAATAATGGAGGGTTGACTG
AACGTGCCTTTGACCATGCGAAATTCACTGCAAGGGTCACGTAAAGATAT
AGAGGAATGGGCTCTAATTCTAACTTCTTTCACAAAACTTTCCTTGACTC
CTTTCAGTGACTGAGGCAATAAAAACAGTCGTGTTTATTTTGTACTCGAA
GATCAATTTTACCTTGCCTGTTATAGGTATTGGAGGTCCAACAACAGCGT
ATCGACGAAGAAATTAAATCTTATGTCAACACTGATGGTTCCAAGAAATC
TCTCAGGTAGAATTATTTGTAGCTGTTAAATCAGATTTCATTGGACCAAG
TAAAGTTTTTTGGTTTAAAATAATTTCCTTGCTGATAGTCGGTTGATTTT
ATCGAGCCTCGTTGCCCTAAATTTATGATGGGTGAAAAAATCCTAACAAT
AGCTACAACCGCTTTTTTAGTAGCAAATTGTTTGACACGTTGGTATCTTC
CATCGATTATTTTTATCCTTTAACTTCTCCTACAGGGATAAATATTCACA
GAGGATTCATGAACAAGAAGTATTGGGAAAGGTCAGTTTGCTTCTCCTNA
AATATTCACAGAGGATTCACGAACAAGAAGTATTGGGAAAGGTCAGTTTG
CTTCTCCTTCCTTCTTTCTTTCTCACTCTCCAAACTTTCGATCCTTAACT
CAAAAGAGTAATTTTTGGCTGAGActcgactgttcttattttcaggctta
aatgttcttaacattttattcATTAGTTGGTCTAAATTCAATTTCCGTGG
TCATTTTTGAGATTTCCTTTATTTGTCCTTAAGCCAACCATGTCTTACGA
AACCTTTCATTAAAAAAGCTTGTACACCTAACTTTAAATGGTGTAAATGT
TCTTTCCCTTTTGCACTGagctaaaaatgttgaaatggTGTTGGTGTATT
TTGCTGTTATAAGACCAGCGACAGTGCTTATTCATTATTGTTTTGTTTCA
GCAATTACGTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTCCCAATA
TGCGCCAAATGAAAATGTGGACTGTAAGTGATATCTAATCTTTAGATTGA
TGTAAACTTTATTTCATAAAGATCATGAATCTAACAAAACAAAGCACAAA
TCTAGCGAAACATTCCTTACATTCTACAAATAATATAGCTGCTTTTTTGG
TAGTGATCTTTAAACTCATTGCAATTTGTCCATCCAATTATCCTTAAAAT
TAATATGTTCGCGAATACCAATTATAAAGGGGTACGCGAAAAAGGCACAC
AAATTGGTAGGACTAAGGTATATCGGatggacaaaataaaatgaGTTTCG
TAAAAGCCTCTGTGGTTTTCGAAAAGGTCTACATGATTTTGACTACTCAA
GCATGATGACAAATAAGCACTAGATGACTTCAAACAATGTGCTTGATCGT
ATCATCTAACGAGAGTTTCAATGCTCtgttattttcaactttttgtttcC
AGGATCTGACGCAACTGTTGAAGTGCAAGAAAGAAAGCTTGAGCGGACCA
ACAACAAACACGGTTGAAGATCCGGCTCTGTACGATGAACAAGACCATct
cgttctgtaaaatacatgcACTTGAGGTTTTTAATACAAGGCCATCTTGA
ATTCTTTTATTTCACACGCTATAagacttttttcgaaaaatgacgACCAT
ACGCTTCTTTTTGTAATCAgtcaaattgtaaattttttttgatttcattt
ttaactgtaaattttttggtttaatttaTATATTGTAACATCAAGTTTTT
GTTCATTGTGCACActataaaagataaaaaaatatatcagcAAACAAGAT
TAAAACGTGTCAGTTCTCACCTGAACGAAGTCTAAacataagcataaatt
aaggctgaaaatgagattttgttaAGCATACTcttgggtgcctaataaac
gtacagaccaaaataaacgtacaggaggg

Coding sequence (CDS) from alignment at scaffold_267:1805..5533+

>TCONS_00056061 ID=TCONS_00056061|Name=TCONS_00056061|organism=Clytia hemisphaerica|type=CDS|length=5928bp|location=Sequence derived from alignment at scaffold_267:1805..5533+ (Clytia hemisphaerica)
AATCTTGAAGCGAAACATGGCGTGTCGGGTTTTCACGATGCCCAAGAAGA
ACTCGAGAAAGTTTCAACTATGAAAGGTGAACTAGATGAGAAGAAAGGCA
AAACATTGGAAGAAATGTCTCAATTGGTGGTTCAACTAACGAACAGTATC
TCAGAGAAGAAGAATTCATTAGCTCCTGTCATCAAAGAATTGAGACCGTT
ACGTCAACAAGCTCAGGAGTTGTCTGTGGAGTACGAAGAACGAAAAGGAA
CTTATGAAACAACTGCTGCTGGCCTCGAAAGCAACATGTCTAAACTTGAC
CAGGAGGTTAAAGCACTTCGCGAAGAGGTTTTGGCGGAAGAAAGTCGTTA
CCATTACATGGAATCCATGATCGAGGTATTGGAGGTCCAACAACAGCGTA
TCGACGAAGAAATTAAATCTTATGTCAACACTGATGGTTCCAAGAAATCT
CTCAGGGATAAATATTCACAGAGGATTCATGAACAAGAAGTATTGGGAAA
GGTCAGTTTGCTTCTCCTNAAATATTCACAGAGGATTCACGAACAAGAAG
TATTGGGAAAGCAATTACGTGAGAAGCAGAAATATCTCCGAGAAAATCAT
GCTCCCAATATGCGCCAAATGAAAATGTGGACTGATCTGACGCAACTGTT
GAAGTGCAAGAAAGAAAGCTTGAGCGGACCAACAACAAACACGGTTGAAG
ATCCGGCTCTGTACGATGAACAAGACCATctcgttctgtaaAATCTTGAA
GCGAAACATGGCGTGTCGGGTTTTCACGATGCCCAAGAAGAACTCGAGAA
AGTTTCAACTATGAAAGGTGAACTAGATGAGAAGAAAGGCAAAACATTGG
AAGAAATGTCTCAATTGGTGGTTCAACTAACGAACAGTATCTCAGAGAAG
AAGAATTCATTAGCTCCTGTCATCAAAGAATTGAGACCGTTACGTCAACA
AGCTCAGGAGTTGTCTGTGGAGTACGAAGAACGAAAAGGAACTTATGAAA
CAACTGCTGCTGGCCTCGAAAGCAACATGTCTAAACTTGACCAGGAGGTT
AAAGCACTTCGCGAAGAGGTTTTGGCGGAAGAAAGTCGTTACCATTACAT
GGAATCCATGATCGAGGTATTGGAGGTCCAACAACAGCGTATCGACGAAG
AAATTAAATCTTATGTCAACACTGATGGTTCCAAGAAATCTCTCAGGGAT
AAATATTCACAGAGGATTCATGAACAAGAAGTATTGGGAAAGGTCAGTTT
GCTTCTCCTNAAATATTCACAGAGGATTCACGAACAAGAAGTATTGGGAA
AGCAATTACGTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTCCCAAT
ATGCGCCAAATGAAAATGTGGACTGATCTGACGCAACTGTTGAAGTGCAA
GAAAGAAAGCTTGAGCGGACCAACAACAAACACGGTTGAAGATCCGGCTC
TGTACGATGAACAAGACCATctcgttctgtaaAATCTTGAAGCGAAACAT
GGCGTGTCGGGTTTTCACGATGCCCAAGAAGAACTCGAGAAAGTTTCAAC
TATGAAAGGTGAACTAGATGAGAAGAAAGGCAAAACATTGGAAGAAATGT
CTCAATTGGTGGTTCAACTAACGAACAGTATCTCAGAGAAGAAGAATTCA
TTAGCTCCTGTCATCAAAGAATTGAGACCGTTACGTCAACAAGCTCAGGA
GTTGTCTGTGGAGTACGAAGAACGAAAAGGAACTTATGAAACAACTGCTG
CTGGCCTCGAAAGCAACATGTCTAAACTTGACCAGGAGGTTAAAGCACTT
CGCGAAGAGGTTTTGGCGGAAGAAAGTCGTTACCATTACATGGAATCCAT
GATCGAGGTATTGGAGGTCCAACAACAGCGTATCGACGAAGAAATTAAAT
CTTATGTCAACACTGATGGTTCCAAGAAATCTCTCAGGGATAAATATTCA
CAGAGGATTCATGAACAAGAAGTATTGGGAAAGGTCAGTTTGCTTCTCCT
NAAATATTCACAGAGGATTCACGAACAAGAAGTATTGGGAAAGCAATTAC
GTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTCCCAATATGCGCCAA
ATGAAAATGTGGACTGATCTGACGCAACTGTTGAAGTGCAAGAAAGAAAG
CTTGAGCGGACCAACAACAAACACGGTTGAAGATCCGGCTCTGTACGATG
AACAAGACCATctcgttctgtaaAATCTTGAAGCGAAACATGGCGTGTCG
GGTTTTCACGATGCCCAAGAAGAACTCGAGAAAGTTTCAACTATGAAAGG
TGAACTAGATGAGAAGAAAGGCAAAACATTGGAAGAAATGTCTCAATTGG
TGGTTCAACTAACGAACAGTATCTCAGAGAAGAAGAATTCATTAGCTCCT
GTCATCAAAGAATTGAGACCGTTACGTCAACAAGCTCAGGAGTTGTCTGT
GGAGTACGAAGAACGAAAAGGAACTTATGAAACAACTGCTGCTGGCCTCG
AAAGCAACATGTCTAAACTTGACCAGGAGGTTAAAGCACTTCGCGAAGAG
GTTTTGGCGGAAGAAAGTCGTTACCATTACATGGAATCCATGATCGAGGT
ATTGGAGGTCCAACAACAGCGTATCGACGAAGAAATTAAATCTTATGTCA
ACACTGATGGTTCCAAGAAATCTCTCAGGGATAAATATTCACAGAGGATT
CATGAACAAGAAGTATTGGGAAAGGTCAGTTTGCTTCTCCTNAAATATTC
ACAGAGGATTCACGAACAAGAAGTATTGGGAAAGCAATTACGTGAGAAGC
AGAAATATCTCCGAGAAAATCATGCTCCCAATATGCGCCAAATGAAAATG
TGGACTGATCTGACGCAACTGTTGAAGTGCAAGAAAGAAAGCTTGAGCGG
ACCAACAACAAACACGGTTGAAGATCCGGCTCTGTACGATGAACAAGACC
ATctcgttctgtaaAATCTTGAAGCGAAACATGGCGTGTCGGGTTTTCAC
GATGCCCAAGAAGAACTCGAGAAAGTTTCAACTATGAAAGGTGAACTAGA
TGAGAAGAAAGGCAAAACATTGGAAGAAATGTCTCAATTGGTGGTTCAAC
TAACGAACAGTATCTCAGAGAAGAAGAATTCATTAGCTCCTGTCATCAAA
GAATTGAGACCGTTACGTCAACAAGCTCAGGAGTTGTCTGTGGAGTACGA
AGAACGAAAAGGAACTTATGAAACAACTGCTGCTGGCCTCGAAAGCAACA
TGTCTAAACTTGACCAGGAGGTTAAAGCACTTCGCGAAGAGGTTTTGGCG
GAAGAAAGTCGTTACCATTACATGGAATCCATGATCGAGGTATTGGAGGT
CCAACAACAGCGTATCGACGAAGAAATTAAATCTTATGTCAACACTGATG
GTTCCAAGAAATCTCTCAGGGATAAATATTCACAGAGGATTCATGAACAA
GAAGTATTGGGAAAGGTCAGTTTGCTTCTCCTNAAATATTCACAGAGGAT
TCACGAACAAGAAGTATTGGGAAAGCAATTACGTGAGAAGCAGAAATATC
TCCGAGAAAATCATGCTCCCAATATGCGCCAAATGAAAATGTGGACTGAT
CTGACGCAACTGTTGAAGTGCAAGAAAGAAAGCTTGAGCGGACCAACAAC
AAACACGGTTGAAGATCCGGCTCTGTACGATGAACAAGACCATctcgttc
tgtaaAATCTTGAAGCGAAACATGGCGTGTCGGGTTTTCACGATGCCCAA
GAAGAACTCGAGAAAGTTTCAACTATGAAAGGTGAACTAGATGAGAAGAA
AGGCAAAACATTGGAAGAAATGTCTCAATTGGTGGTTCAACTAACGAACA
GTATCTCAGAGAAGAAGAATTCATTAGCTCCTGTCATCAAAGAATTGAGA
CCGTTACGTCAACAAGCTCAGGAGTTGTCTGTGGAGTACGAAGAACGAAA
AGGAACTTATGAAACAACTGCTGCTGGCCTCGAAAGCAACATGTCTAAAC
TTGACCAGGAGGTTAAAGCACTTCGCGAAGAGGTTTTGGCGGAAGAAAGT
CGTTACCATTACATGGAATCCATGATCGAGGTATTGGAGGTCCAACAACA
GCGTATCGACGAAGAAATTAAATCTTATGTCAACACTGATGGTTCCAAGA
AATCTCTCAGGGATAAATATTCACAGAGGATTCATGAACAAGAAGTATTG
GGAAAGGTCAGTTTGCTTCTCCTNAAATATTCACAGAGGATTCACGAACA
AGAAGTATTGGGAAAGCAATTACGTGAGAAGCAGAAATATCTCCGAGAAA
ATCATGCTCCCAATATGCGCCAAATGAAAATGTGGACTGATCTGACGCAA
CTGTTGAAGTGCAAGAAAGAAAGCTTGAGCGGACCAACAACAAACACGGT
TGAAGATCCGGCTCTGTACGATGAACAAGACCATctcgttctgtaaAATC
TTGAAGCGAAACATGGCGTGTCGGGTTTTCACGATGCCCAAGAAGAACTC
GAGAAAGTTTCAACTATGAAAGGTGAACTAGATGAGAAGAAAGGCAAAAC
ATTGGAAGAAATGTCTCAATTGGTGGTTCAACTAACGAACAGTATCTCAG
AGAAGAAGAATTCATTAGCTCCTGTCATCAAAGAATTGAGACCGTTACGT
CAACAAGCTCAGGAGTTGTCTGTGGAGTACGAAGAACGAAAAGGAACTTA
TGAAACAACTGCTGCTGGCCTCGAAAGCAACATGTCTAAACTTGACCAGG
AGGTTAAAGCACTTCGCGAAGAGGTTTTGGCGGAAGAAAGTCGTTACCAT
TACATGGAATCCATGATCGAGGTATTGGAGGTCCAACAACAGCGTATCGA
CGAAGAAATTAAATCTTATGTCAACACTGATGGTTCCAAGAAATCTCTCA
GGGATAAATATTCACAGAGGATTCATGAACAAGAAGTATTGGGAAAGGTC
AGTTTGCTTCTCCTNAAATATTCACAGAGGATTCACGAACAAGAAGTATT
GGGAAAGCAATTACGTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTC
CCAATATGCGCCAAATGAAAATGTGGACTGATCTGACGCAACTGTTGAAG
TGCAAGAAAGAAAGCTTGAGCGGACCAACAACAAACACGGTTGAAGATCC
GGCTCTGTACGATGAACAAGACCATctcgttctgtaaAATCTTGAAGCGA
AACATGGCGTGTCGGGTTTTCACGATGCCCAAGAAGAACTCGAGAAAGTT
TCAACTATGAAAGGTGAACTAGATGAGAAGAAAGGCAAAACATTGGAAGA
AATGTCTCAATTGGTGGTTCAACTAACGAACAGTATCTCAGAGAAGAAGA
ATTCATTAGCTCCTGTCATCAAAGAATTGAGACCGTTACGTCAACAAGCT
CAGGAGTTGTCTGTGGAGTACGAAGAACGAAAAGGAACTTATGAAACAAC
TGCTGCTGGCCTCGAAAGCAACATGTCTAAACTTGACCAGGAGGTTAAAG
CACTTCGCGAAGAGGTTTTGGCGGAAGAAAGTCGTTACCATTACATGGAA
TCCATGATCGAGGTATTGGAGGTCCAACAACAGCGTATCGACGAAGAAAT
TAAATCTTATGTCAACACTGATGGTTCCAAGAAATCTCTCAGGGATAAAT
ATTCACAGAGGATTCATGAACAAGAAGTATTGGGAAAGGTCAGTTTGCTT
CTCCTNAAATATTCACAGAGGATTCACGAACAAGAAGTATTGGGAAAGCA
ATTACGTGAGAAGCAGAAATATCTCCGAGAAAATCATGCTCCCAATATGC
GCCAAATGAAAATGTGGACTGATCTGACGCAACTGTTGAAGTGCAAGAAA
GAAAGCTTGAGCGGACCAACAACAAACACGGTTGAAGATCCGGCTCTGTA
CGATGAACAAGACCATctcgttctgtaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035284	XLOC_035284	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00056061-protein	TCONS_00056061-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_267	supercontig	scaffold_267:1805..5533 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.8875	12.2839	8.18197	4.56449	0.331778	0.838019	1.80383	1.08655	2.60554	2.83562	3.49038	3.08309	1.17481	1.8084	1.6943	2.19383	1.9656	1.92017	3.30049	2.34228	4.2996	4.32778	8.35924	7.83931	0.851307	0.446049	3.55496	2.41108	4.14031	4.46947

Blast

[Close]

BLAST of TCONS_00056061 vs. Swiss-Prot (Human)
Match: IFT81 (Intraflagellar transport protein 81 homolog OS=Homo sapiens GN=IFT81 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 6.328e-63
Identity = 116/224 (51.79%), Postives = 159/224 (70.98%), Query Frame = 1

Query:    1 NLEAKHGVSGFHDAQEELEKVSTMKGELDEKKGKTLEEMSQLVVQLTNSISEKKNSLAPVIKELRPLRQQAQELSVEYEERKGTYETTAAGLESNMSKLDQEVKALREEVLAEESRYHYMESMIEVLEVQQQRIDEEIKSYVNTDGSKKSLRDKYSQRIHEQEVLGKVSLLLLKYSQRIHEQEVLGKQLREKQKYLRENHAPNMRQMKMWTDLTQLLKCKKESL 672
             +E K G+SG+   QEELE+VS +K E+DE KG+TL++MS++V +L + +SEKK++LA VIKELR LRQ+ QEL+ E +E+K  Y++ AAGLESN SKL+QEV+ LREE L EESRYHY   MI+ LEVQ +R  +E+K+Y+++D  +K       + I EQ            Y++   EQE LGK+LREKQK +RE+H PNM+Q KMW DL QL++CKK+  
Sbjct:  448 TMEEKKGISGYSYTQEELERVSALKSEVDEMKGRTLDDMSEMVKKLYSLVSEKKSALASVIKELRQLRQKYQELTQECDEKKSQYDSCAAGLESNRSKLEQEVRRLREECLQEESRYHYTNCMIKNLEVQLRRATDEMKAYISSDQQEK------RKAIREQ------------YTKNTAEQENLGKKLREKQKVIRESHGPNMKQAKMWRDLEQLMECKKQCF 653

The following BLAST results are available for this feature:

BLAST of TCONS_00056061 vs. Swiss-Prot (Human)

BLAST of TCONS_00056061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IFT81	6.328e-63	51.79	Intraflagellar transport protein 81 homolog OS=Hom...	[more]

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TCONS_00056061 (transcript) - C. hemisphaerica