TCONS_00056065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056065
Unique NameTCONS_00056065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1269

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056065 ID=TCONS_00056065|Name=TCONS_00056065|organism=Clytia hemisphaerica|type=transcript|length=1269bp
ataaaaatgaaaaaaacttcaaaaatagaTAATTCCAAAGAAGAAAAGAT
GGCTGACCAAGCTTTAATAGCAGTTTTCCAGGGTCTATTGGCTGTGACGA
AAACAGTGACGTTTTGAGTAAAATGGAAAACTTTCTGTTGAGATAACGAT
GCTACAATGTAGTCGTCCAACACCAATTGGAAGTATCAGACGATTGGCTG
TCATCGCTATTTTCGCGTATGCTGCTTTCAAATTCTATGGTCGCGAAAAT
ACACCagATTACACAAGCAAATCACACGGTGCAACTAGTCGTCACCTACT
GAGCGCTTTCGAATGGGAACAATGCAACTTTGAGATCGGTCATACACGGA
ACTATTCGAATCCAGACTCTTGGTATTCACCAGCGTCTGCTAAAGGATGG
GTTGCTTTGTATTGTATCCTTATTCTCATCGTGTTTGTTGctTTGGCAAT
CATCTGTGATGACTTTTTCGTGCCTTCTCTGGAAGCGATCagtgaaaaac
ttgatttaTCAGAAGATGTAGCAGGTGCCACCTTTATGGCGGCCGGCTCT
TCAGCGCCGGAACTTTTCACGTCAATTGTGGGTGTGACGGTCGAGAGTGA
CGTCGGTGTCGGAACTATAGTTGGgAGTGCCATATTCAATCTTCTTGGTA
TTGTTGCATTATCGGCAGCTTTTGCTGGTCAGGTTCTACATCTTGATTGG
CGACCCTTGACGCGTGACGCTGCATTTTACTGTTTTTCTATTTGCTTTTT
CATCATCTTTGCATGGGATGGCAAATTTGAAATCTACGAAAGTGTCATTT
TACTGGCCCTCTATTTTCTGTACATCCTTCTGATGAAATTCAATCCGAAG
TTGATGGAGAAGATGGCTCAATGGGGATCACGAAAAGTGGATCCTTCATC
TGACAATAGCAACAAAAGCGATAAAGAAGATGGCACAGAAACGGTAACAT
AACTTTTACTAAATAGTTTGTTTATTgtaaggggggggggcaagtGGGCA
AATACAGATAGATGGATATACAGGATGACATAAAAAAATGTTGATGAAAA
GTAAGAATTCCAATATATTAGGTAGGTAGTACAGTTTGAAAGATAGTTAA
CTAACTGATTGTCGGAAATGTCAGTGATTGTTCATATTTCGAagctcgaa
tgtctccttaacttggacggttgttaatttttcgaaaatttcccaacccc
ccggaccttattaggaccccccctgtttattaatttttaagaatactttc
agctgtcaaagagaaggcc
Run BLAST on NCBI

transcript from alignment at scaffold_267:25181..44592+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056065 ID=TCONS_00056065|Name=TCONS_00056065|organism=Clytia hemisphaerica|type=transcript|length=19412bp|location=Sequence derived from alignment at scaffold_267:25181..44592+ (Clytia hemisphaerica)
ataaaaatgaaaaaaacttcaaaaatagaTAATTCCAAAGAAGAAAAGAT
GGCTGACCAAGCTTTAATAGCAGTTTTCCAGGTTCGAACTCTTTCTTTGA
AATAACAAGTTGTTACCCTCATCGCGTGATTATGTAAATGTTTTTCCTCT
TGAACCCTATCATTCCATTGATAGTTTATGAATACATTTAATATAGACTG
AATGCTTGTTTATCTTTTCTCCCGTGCAGGACAGATTGTTTATAATATAA
CAAACAATCTAGCAGCACTTTAACTTCAGATGTATTGATTCTTTTGGTTA
CATAATTATTAAGATATAGCTTTTCATTATTTCTTTAGGGTCTATTGGCT
GTGACGAAAACAGTGACGTTTTGAGTAAAATGGAAAACTTTCTGTTGAGG
TGAgcgattaaaatatttttaatttcatttttatgtcaAATCTATGATTC
GATTGTGCCTTTGATTTTTTGTGTAAATTTTAAATAGTGTATATTGTATT
AAGACCCTTTTTTAGAATTGAGAACCAGTAGATTTTTGACGAGGCTCCgc
tgttctcattttttggcactttgagccaaaaattgttcttattctgtttT
TATTTCTGTAGGGCAAAACCTATTTCTGCTAGGTCGATCTCTATCTATTA
GAAAAGAGCTTATTTTCGATAGTTACAGAAAGCAAATTATCCACCGTCTC
GTCAAGTGAACCTATCAATTGAAACGAGGTACCAGTGAACATATTCGATC
ACCAGGTTTATTACACTGACAAaagattgtttttatttctattttctatt
aaTTCGATTGACTTTGATGGAAGAAAAAGCAACAAAGGAGGCACGTCGAA
ATGGTCAATAAATCTGTAAAGATATATTGTCATTTATTAATACTGGTTCT
TATTAAACTAGGATTTAATGATATTTATAATTAAGTAGATCTTCATTGAA
ATGGATATTGTAAGGTTATTAATTTTAAATAAGATCCTGCTCACACCCCT
CAATAGTGAATAGATAAGATCTGTAAGTTTCATTCTTCGAATTATGTTGT
GACTAGTACCTTACCGTCTTGCTTGGTGTTTGTGATTTGTTTACTTTCGG
GAATGAAGATTCAAACTtaagaagcagccaccgacctaaaatttgcaatt
atctgttctgatttgccagctgtaAGGATGTccccgaaattaagaacagt
tcctcgttttccaggggaaaaattttacttcagaacagttatatttttcc
agctaggaggtaaaaaaactttcgaaacaggtacgaaattaccaggcgat
tgattttatgcgagttaactgttcttatctaccagggtggacaaaatctt
ataagaacagatcgctaaattccagctcgactgaaggacttttaagaaca
gaaacttaatttccagctaacagtNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtctagccct
tcgggcttgaaactcaatggttttaaACAGCGCTGGGTAGGGTGAAGGTA
TGCACGCGCCAGCCGCGCGGGCTGAATTCATCATCGCCTCCTGCCTTGTT
TGTTTATGtcatatgcaatgtcttcttttttactttcgaacgttcattga
aatttcgaacgttaaaaatattttggttgttatcgtaaaaatagaaaaaa
agcatTCCATAAATAAAATGACAAGACAATTCATAAGAATGGTGAAAATT
TCATTGTAAAGATATTGGATTGATCGTCAAACAGTAGGTTTTAATCTCTT
TTAATGTTctgtgttttttatttttagtccCGAGTTTTTAGTAAAtgtaa
aaactttgaattttttcactgCTATCAGCATTTTGTTCATACCAAAAAAG
TATATACTGTATATGCTTTACTTTCATTCCAAAACATGCAATGTTCAAAA
TTACCCATTTTCTATAATCATCCAAATAATTTGGAAGTGATATTTTTAAA
GTCTAAGTCTTAGAACAATAATTGTCTTCAATGCTATAAATTGCTGTAAG
TTGGTTTTTCTTAATAATAGATCTTCTTCGAATGAAGTTTCGTCCAGCAA
GAACATGGCCAGCCTGAGAATTGAAGAGAACATATGCTCAAATTTTTCTG
AATTCAAATAAACTTTCGTAATTGTAGTAATTCTTTACTTCCCAACTTCA
AATTATTTGAAGTTGGGAACTAAAGAATTACTACAATTACGTAAATTAGA
GCAGATTTGTTTGACTTGAGGGCCAGTTTTTATAACTTTTAAGGTAatac
ttttcaataaattagTTTCGTCAAGAACAAGAACATTCAAGGCTctaaat
tgtcaaaaaataagcacatccagtcTAAAGCCCAAAATAAAAATCAGAAC
TGATCAAGAAGGATATGTATAACACCCGTATAACAATTAAGTTAAGGCTT
TAAAATGCCAACAAACCATGGCTTTCTAGATCTAGAAGTAGATTTAGAAA
GCCATGCAACAAAAAGAGTGAAGTCGTGGTAGTGCTAGTAGTTAAATCAT
GCTTTCAGTCAGCTTATAGTGGCCCCCATTTTCCTGTAACCAAGCAACCC
TTTGAAATCCAAACTTATGAAAAGTTATCGCAGTCTCTAACCATTGTTTC
TAAACATTATTCATAATTGCCTCTAATTGCTGCAATTTGATATAACTTTG
ATTGATTGTGTAAatgttgaaattaaaattttatattaGAGCCTTTCTTG
TCTTGAGTATTTCATGTGTAAAATTCCcccagaaaaaaaaagaaaaaagc
aggCTTAAAAAATGTCGATGAAAAAGTCTTAATTTGAGCCTTGAAAGGAA
ATTCTATCTACAGTATGGTTGGTTATTCTCATCCTTTGACCAAAATTCAA
GGGTATGTTTTATTTAAAGGAAAACTGAAAACCAAAGTAAGAGGAGAGAT
GAGaacttttttctctaaattgaaTGGAAATAGTCTCAAGAGAGTATTTG
TATATTGTAAAGTAAAATGAtaagttttttttgtgtttcaATATTATACA
GTATTACTACTACAAACGAAGAAAACGAGGAATAGAAAGAGGAACGAGAC
AAGAGagaaaaatcagaagaaaaggGAGAGATTAAAAattagtttgagaa
aaaaaaattcaaactctcaaagAGGTGAAAGAGTTGATGACAGTGACGAA
TATATTTTGCATTTGTTGTTAATAATTTAcgatttttatataattttgtt
gTGTTGTCTTTTTTTGTATTGTATATGCTGATTTATGTCGAGGTGGAGCA
GCAAACTGCTTGATTTACTAATTGAGCtgttttttcctgttttTCATTTC
TAAATTTACGATCCCTCCCTTTCGTATCTATTTATACTTACATGCAGCTC
TTAATTTTGAGCACAGAAGCTCTCATTTTGACAGTGTTTGAAGTTGAAGT
TGTAAATAATTTCTGTTTTGATGGAATGAAGTCTTTAAGGTAAGTCATAT
AGCACCACACTGTGGGCAAGCAGGTGGAATTGTCCGGGAATTTATCAAAA
ACCAATTGTTTCCGATTCTACATGAAATTTGCAACACATTAGGCTTAAGT
TTGGGTcgattttctgaatttttgtccatttcagTCTTTATTGAGCATTA
AAAGAATTtggaaaaatagcatttttcgACTTTCCCACTCTACAGAGCAA
AGAAGGCCATAGTTACCCAATTTTGAAGCCAAAAGcaattttttgacttg
atttGCAAAGCTTAAGACTAAAGACTATTCCATCCAAAAGAAGCTGTTTT
TGGAtgaagaaattggaaaaattgaatgaattttctcaaaaatgtgccgt
tttatgcatttttttaaggttcaaattttgacaaagacCTCAAAATATCT
CGATTTGCCTAAATGGAACCAATTGAAACTATATATATTAATCCTCTATA
TATAAAATCCTctaatttaaacaaaaaacccATTCCAATTTGCTTTTGAG
TGCTCTATTTCTACCTAACGCCTTAATCTTTCCCACTATGCACCAGTACG
CATTAGCACCGGTTTTTCAAACttgtttttgcttgtttttataagagcag
aaaaaaatggcttttgaAGGAGGAGGGAGGGCTGTTTCCATATAAACAGC
TCTTCGTGCGTGATTGTCCATATATTTACTGGATTATTCCTTCAGATAAC
GATGCTACAATGTAGTCGTCCAACACCAATTGGAAGTATCAGACGATTGG
CTGTCATCGCTATTTTCGCGTATGCTGCTTTCAAATTCTATGGTCGCGAA
AATACACCaggtataatttttttcaaatcactTGAATGAAATCAATAACT
GCCACACGCATTTGTAACATCCGTCTGACCtagtaaagattttttttcca
gcgGGGATGCAATAAGGATGTACACGAGGGCAGGaagctataagcaaaaa
gctcgtacccaaaaattttaaaaatgtcaaaaaatgaaggtcttcaaatc
tctctaaaacctatttttatgggAAGCTATGGTATTTTGTANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTCAAAATTCCcctatcttttcgtcaattgtacttgaattgagatt
tctttgcttgaaaattcttcaaataggtAGAGTATATCAGAATATGcaaa
aaataaagtcaaaaatgCAGAATTACAATGAACTAGAAGTCCTGCAAggt
ggattttctcatttttgatcaaaatgtttcgtagactaattttggaaaaa
cccgggtttttttttaggattcaGCTCATGTTTTAGCtttctaagtttat
ttttctcattctagtatatatttctgacaactttacattaaaattataat
atttcttacaaattcaggaaaataattacatatttctcatttatgatttt
tagcgtttaatcacttttttggccaaaaatgggTAATTTTTCGgccgaaa
tccaaaaaaaccggaatattaacttgaaaataaccctatcatgttatata
tcagtggaagcggaattttgagtagattttgaatatccaagtttcatgtc
ctgaaaaagaactcaactcaaattattatgctttaacagctaaaaataga
catggatgggtacgagctttttgcttatggctaggacttcaaattttatt
ttttcctttcaaacattatatacagtaaaaaaatcactaaaaagtcCAAC
CTTTAGGATCCGCACATTTACAATAattttttctgacttgaaaaggctcg
tccacccccatgtacgttTTTTATTGGAACAGCCCATTAGGttatgaaaa
agtttttttggaaaaaactcAAGTTGTAGGCAAAACTCCTAACCCAAAAA
ATAAGCAACAAATTTACGATTTCTCAAAGTTGAATTTAATCAGCAAAAGA
GTATTCCACAACACTCCACAACAAGTCTTGTACTCAAACATATAAAAAAT
GCAGGCTTTCAAAGTTAAAAGTTCTGTCAGTTAGAGTAGGATTGTCACAG
GATTTTGAACTTCAAAATCATATCTTTTTGTGTGTTTTCAAGAGTGCACg
ttcattttataagaacaaactatataagaacataaggcttcgatggaaaa
aatgttaagaacaagttaagaacattttaaggctttgtggattcaaaaat
acctttttcttaggaaaatggtcaaaaatatattcacaaaattgtcacaa
taagaacatgttaagaatttttttaggcttaaaaactctaaatgttaaga
acatccaaaggctgcaaaagttttggatgttcttataaaaaacgtgtata
cagggggggcacgcagttactacaagacagtatgacacttactaccgtgg
tggtactgtattcagaagttatgaaaacagttactacacagtgtagtaac
tgctgtttgggggtggtgccaaacactaacggtagcacttttggtgtagt
aagtgcttatattttaattctttttaaagaactttcaaaatttttcacca
aaaatgaatttttttgtgaaaaaattctttgttaaaaaaaatatttgtta
taaatggacgaaaaaaaatttgattaatttttctcagactcaactttgaa
attatgctttccctaattatcattaaaatgttctcaacctGTCTCAACAG
CTGtaaaccaagtaaattaaaagaaaatctagcacaaaaatggctttagg
ttgaaaaataatcgcaatttagggtaatttcgagcatgtttttgatgata
tcactcaaaaaCAGGGGTGGTACCTGGAAATCTtttctgaaaacagttac
tcccaaggtgtagtaactgcaaagggtggtggtcctgaaaaaaagtgttg
aaaaagcacttactacacatcatgtcttgtagtaactgcgtgccccccct
ggTGTATAAGACTTGTTGTAGTATATGTGTACTACGGCTTTTTTATGTTC
ACCTCTTATGTTTTCTTTTCTACACAAGATTACACAAGCAAATCACACGG
TGCAACTAGTCGTCACCTACTGAGCGCTTTCGAATGGGAACAATGCAACT
TTGAGATCGGTCATACACGGAACTATTCGAATCCAGACTCTTGGTATTCA
CCAGCGTCTGCTAAAGGATGGGTTGCTTTGTATTGTATCCTTATTCTCAT
CGTGTTTGTTGGTaagatcaatttttgttatGGATTTTTGGAACAAACAG
AATCATAGGCGTGTCACCTTTTGAAAATGTCACCCACTCTAGGCCTCAGC
AAAATCACGAACGTTCTTTCAGCGAAAAATGATTTGACTACGATCTCTAG
CTTTGAAAATATACATAGTGGATTGTTTTAGCGCTTTATTCATGGTGTAT
ACAGGActagaatttgaatttcttgaaaattaactcaaaatttccctcGA
AAAAAAACCCTATGTATTCCTAGTAAAATGTTGAGAAAACCTTGAGAAAC
ATTATTTTCACAGCTGATCGTTAGCTTGGCTCCTTTTCTATTCCCATTTT
TCAGTCAAGATACAAATATATGGTTTCTTGTCAGTAAAGCTCTCTCCAAA
TTAACTAATTTTGTTTGTAACATTTCAAACTTTTGAGTGTCAGTGAAACT
CGAGACGAGACATAAAGTCGGCAGAGATTCGGCTGTTTAAATTAGAGATC
ACTGAATGTTGATTGTGTTCCATTCCGCTGGTCATACATTCCTTCAGTTC
CTCCTCGACACCCATGCAACCTAATTTAGGAATGTGATTTAGCAATTAAC
GAGAATTTATCCTTGATCGTCAGCTCTTtccactttaatttttttttact
tagaaCGTTTTCCTACCATCCTCCTTTAAACAAtccttttttcaaattgt
ttttttttggggggggggggggcattaaaaaaagaaaacttttcgaAACG
CTTTTCGCAAAAGATAAGTTTTTTCGTAACGTATTGGGGTTTTGTAATTT
GAGATGCGTCACATTAgaaaatttatttactttttcccGTTCTGGATGCT
CCGTGACTTATCAAGCATGCCCTCGCTAAATAATTGGGTtgcttttttac
aattttattttctttttcaatattaTTGCGATTTTATTCGGACAACGCTT
TTtaagttttgtaatttttcaacaCATCTTTCTTCAATCACCTATCAGGT
AACATAGGATTTATACTTTCGTGGTTGATTCTTAGACAATTTAACTTTGC
GATAGAGCCTACTTCTGACTGATGCTTCCTGATGATTTTAAAGATCCAGT
GAAATGGAGGATACCGCCATCTTAAaagttttcactttcttttcaattat
tattaaaacaccaaaacaagCAGTGAaatatattccattataaaaattta
taaaactagGATATAAAGACAGAAAAgtaatttaatgtttctaaactaAC
ATACCTAATTTTTCATAATCAGAGTTTTCAAATTAACTTggttcatataa
aaaaatctaTCAAATATAACACTAAATATTGGAGAGAATTAGCGGACACG
CGATTTGTGAGTACGCTTGCACGAAgtgtgaaaaataattaaaatctttC
CCGGCTGAAAATTTTTGCATCATTTTAATTTATGTCAACACGATGTGTGC
ATTGACCCCAGTTTTATAACGATATTTTTTGGACAGCTCAGTCGATAGAG
CGTTTGCACTAGTAATGAAAAAGTCGCGATTTCGAATCTCACTTCAGTCC
TCAGCTTGGTAGTTCGCTATTAGGGTCAATACGCACGTGTTGGCACTAAA
AACAAAGTTGATTATAGTGTTGTATGTTTCAAACTATAAGGAATCCCGGA
GATTAGATGAAATAAAACATTGAGCACTATCTGTTGGAAAGGTaattcag
aaaataaaaaataaaagttaaacattttacattttaaattgCTGCCAATC
AAATATATAAAAAGAGTCAAAAATCAATCGTTCAATTTAGGCCATCATAA
CGTCTTGTTAAATATTTGCCAACTTTGCCATAAACAATATCCAATAATGG
AAACATCAGATAAGAGATGAAAGGTGCGNATATTTGCCAACTTTGCCATA
AACAATATCCAATAATGGAAACATCAGATAAACGATGAAAGGTGCAAAAG
AAAGAAGTACAACATAATTGGCATTGTTGCCAATAACCTGATCTTTCGTA
GATGTTTCCATTAAAATCGAAATgcaatttatcaaaattaaagCTTGTAA
GCAGATTGACTCAACCATGTTTAAGCGGGTTAAATTGAATATTTGCGAGG
TCTGGTGTATACCATAATGCAATAAAAGACAGGACGAAATTAACCATAGG
CGATTTTCCGGACGAACGCTGAAGGTACAAACAAAAGCCAAAACGGTTCG
CGAGAAGAGGTACATGCACTCCCAACAAACAGCTTGCTCCTTTCTTTGAT
CACGTGACTCTCTTAATCGGTATGGTTGAAACAGGGTGTGAAGAATATGT
TTAGCTATCTGTCCATTCATCTCTGTTGATCGGTTTTGAGCTTCTGGTGT
TTTGTGTTGCTTTAACAAAAAGACCAATGCACTGAGTGGAAATGTTAGAA
TCAGGAGAAATTGGTTTGGAGTTATCCTACATTGTCTTAACCATCTTGTT
GCCTTGTACAGAGCAGGGATAAAGGGTATACACCAAAAGAACAAGACGAA
AAGAGAAGACGAGACGATTACGCTGTCGGTGGAGAATGCCTTTGAAGCGT
CCATGAAATGATATGAACTACCATTGATGGTGACTGGATGGATTAGCTGA
AAGGATAATACGGTGATTGCAGTATGGCCGAAACATAACAGTTGAATGTA
AGCGCATTTGATACGGACAGGTAAGGGGATCTTGTTAAAGGCTTTGGTAT
TTTCATCGATATAGACTATTTCCCTTCTCGGTTGATCATTTTGGAGTCTC
CTGGTAGTAATATACTCGTAAAGGCCAATTCCAAATACTCCAACTGACAG
ACTAGCAAATGGTATAAACCATACAATGATCCTAAAGATTTCAAGTTCCG
TCATACTTTTCATTTCAAGGGGACAAGTGTTCCATTCGAGAGAAGGTATC
TGCAACTTGATCGAGAAAATCGAGACGAGAATTTCAGTTGGAATCAATTT
CTTAAGTGATAAAGGGTTCTGAATCAATATCAGACCGAGGATCTGGTAAA
AGTTGAATATGATTTTCATCATTCCTTGGGTCGAAAGTGGCATTGGGTTT
CCAATGATATTATTTTGGTTCAGGTTATTTTCAGCGACTAAAGGACGAAG
CTCGTTAGTATTTTGATGGCAATCGAACGAATTATCATGGTTGTATTCTG
TGTTGCTGCTCGCAGATGTTGAATTACAACCTCCATAATTTGGTTTCTCA
CNTGGTTGTATTCTGTGTTGCTGCTCGCAGATGTTGAATTACAACCTCCA
TAATTTGGCTTCCCAACACTCACCAGTTTTGATGATTGTTCTCCATGGGC
ATTATGCCCGTCAAATCTTTGTTCGCCTTTTCGTTTCCCTTCTATCTCCT
TTCTTTCATGTCGCTGTCCTAAAACTTTTGCATTATCATTATGTTCCTTA
CGCCACTGTTTCTGCGTCAAATTCCTtacatttctttctttctttcgtcC
CAAATgcgcaaaaacgtaaaaaactttttcagaaaACATCAACATTAAAA
GAACTATGAGTGAGTCagacaaaacaaaccaaataaTGCTAGCATTGCAT
TTCTCATTAGCAACACAACTATACTCGTTAAATATTGTGAAACTGTATCC
AGATGGACAACTACTGCAAAGTTTGCCAACTCTGTCGTTACGACAAGTAT
CATATGAGGTACAGTCCTTCATCGATTGACAACAGTAGGTTGAAGGACAT
CTCTGGAAAGAGATTTCTCCTGTATTTTTGCCAACATATCCCCAATAATT
TCCTTCACTTAGGACCCCTTTTTCCGTCCATACTCCATCATCAGGACATT
CAAATTGTGGTGCACTAGAAGTCTGAAAAGTTCCTGTCCAAAATAATGTC
GATGGTTGTGTTGAATACTTTCTTCCTTTCAAAGACAAGCAGAAATATTC
AAAGTTCTTGTCATCATAAGAATATTTTACTTCCGTGTTTTCTGGACACT
CAAATACCAAACCTGTTCCTATATCAATAGTAGTGTTTACAATTTTAACT
CTAGAATATTGGTCAGTCCGAATGGCTTGCTGAGAAATATTGATACCTCC
AAGGTGGAAATATACTTCATGAAAGTGAATATACAATTTTCTATATCACC
GTAGGTTGAAAATAACTGAATCGTCAAACCGTTGAATATGCAATCGGTAA
TTACTAATTCAGAAATACCATATTCTGAGTCTTTTATATGTAGAGCTGCT
TTTTGAGAAGGTTGTTCGCTTTCAAAGATAAATGATACGATGCTTAAAGA
CTGAGTCTGTATCGCCATACATGTTTCATTAGCTGTGGTCGTATTACATT
TGATAATTGGCTGAACCCTTGAATCTAATGCTTCTAAGGAGATTGAGAAC
TGGTCCGATGTATACTGTGATCCATTTCCAGCATTGACGTGGTAAACAAA
GCGTTTGTTAAGGATCCACCATCTACTATCAAATGACATACACTTATATA
TTGTTGTACTAAACAATTCTTGAATGCGTATGTGATGGTGCGACAAGGTT
CTGATCGCAATCCACAACCATCTTCATCATTTGCATTGGTGTCTTGTGAA
ACATGGATGTCACAGCATGGTGGGGTAGATACTGGTAAATGGAAGTTGAA
GCAAACTAGTTATTATCATTAATGAAATACTAGagttaaattatttttcc
tgTTCGATTTTTGGACACACTGTCCCTGTTTAAACCCTTGAATAGAGAAT
AGGTGATACATGCCCATATCCGAGTTTTAAGTAATTTCGTACTATGACTA
TCTTTTTATAACAGTGTCCATAATAAAAAGGCATAAGAAGATATTTCTCG
TATTAGcatgagaaattttaaattgtgAACAAAGGTTTTGGACTGTCGAA
CTTTATGAAGCTAAACTTGTTCGGATCAATATTTTACAGAAAACAGCAAA
ATAAGTTTTTGATTACCTGTAAATGGCGAGAATAATAAAACCAACAGAAG
GAGCATCAACATCATGCAGTTCAAAAGTTTACTAAACATTAAACATACTC
TTTTCCCTATGAAAACCTTGTCTAATGTGAAACTATTTGGTTTATTTTGC
TTGAATAATGTTGACAATCAAAATATCCCATTTCATTATGCGTGTTGGAA
CCTATTTCCCTTGTATTCAGAGATTTAAGTCAAAGTATAAAAAATGGTTC
ATTTCACCGTCCCTGTTGTCTCCTAAACATTCATTTTAAGGCATTCTTTC
AGATAGCCTTTTTGTTGGTTTACTAAAGAAAGAGCCTTTAAAAATGCCAC
CAGAGAATTACTTATCCTATTATTTGTGGCCCGGGGTTCACTTTAGCTCT
CTTATAGACTGGATAGCGCGATTAAAGTGGCCCGGTGGTATACACTCTTT
TATAAGGACACATACAAGGctaaatatttgttaaaacctaaaaacaacCT
GACGCTCAGCTCTAGTGAATGTTTTAGAACAAGATAAATAGGACCAAGTC
TGAATCAAAAATATAGAAATTAAAGGAATAGTGTATTGCtacgcaaatca
aaatattatggtcacgtgtctggaatttgattggtcgagcgcgataaaag
tttacaatttgattggtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNttttttgttttcctgtgttctttgtgtttcatc
aagagcagatgaacaaaataacaaatagtaaataaagcataaaacatttt
ttgaaaaaaataacatgacattacaaaattcctgtatatacaattggatt
ttgaaaactatataaagtatttacaaattctttatggcttcacttttatc
aaaagtgatgcaaaagtatttgaataataatatgacctcctctttgaaat
tgccttccaaaatatttctttccattcaaaaaaaaattctcaattaaagc
accctcagaatttttcacacaGTAGCACTTCATAGGGAAAACTGTTGCtg
aaaaaatacttccttttttagcagaaaatgtttttaatatcttaaaattt
tatcattgagtatatgtatttatcgtcacttcatacaacatcagtcacaa
tattccacattcactcaagttaacaacgtaaataaaatgtaaacagttct
tcttacagCAGCATATCCATACCACTGTAAACCATGTAAAAAAATGCAGC
TATGTCCATCCATCACGAAACAAACTGGTACATGAAAAATACGTTCAACT
GTTCCCAAATCATAGCATGTACGAGGACTTTCAAAAAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TGCCAGAAGCACAAGAAGACAAAGTCCCTTGATCGATGGtttgatcttaa
ttttcaatgatagtcacaggattttaaatttaatcaaatcaatgtgtcct
acttcctcaacattatttcataaaattccaaatcagtacTATATGATGCT
CAGAACCAGACAGAGTCTTTCATTCATCGTAGAGttacttttcacttcat
tttatttggttcgtgcaaaatctcatgatacagtgcttttatcgagaaaa
taatatccACATTCCATGATTATATCGAAACGAAGTATTCCGAAGTTATG
TAGACTACAGTCTccagagttgatttttcaagtcattggatgaacgaaaa
tgtcccatattttgaagtacgaaccatgaaaatcttctttgaacaaggct
ttcttgtcttgatgagtttcattcacttctcagatccatatatGCACACN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNagcatcatagaaaaataaacattgaaactttcCATAATGATAGT
TCAATAATAATATGACCTATTTCAGTTAATATTAACACTGCTCAGCCACA
AAATGATCAATGGAGGTCTCGTAAAGATTGCAGtttttctcaataaaaat
tttccagtCGCCATTTTCTTCTAGCTCGTTTTTTGAGCAAGACTAGAATC
TCGTTCGGTTTTCTCGCGCCCTTGACGGGAAATACTGATTCGGGTAGTTT
TACTTTTTGCGGGAAAAACATGAGCGAGTTTCTTTGCTGTCGAGTTCAAC
TGTAGCAATACACTATTCCTTTAACACCGTTACACACATGggtctgaaaa
tgaataaaaatgttctgaaCAAAATAAGACCTTTTAAGCAcattaaagcc
ttaaaatttcacaaaattaagaacagcccagcttAAGCCAAAAAATTTTG
GTTCTTATCAAAAAGCGCGTGGTTTTCGATTTTGAACTTTTGCTTTGGTG
TTGTAAAACAGCCCGATGaagaaatgtttttgtttgaaggTATTGCAAAT
CTCAGTTATGTTGGTTTGATGAAGTCTTAAAAATGAAAGGAAAAACTTTC
TAACGcaagttcttttgtttttttagctTTGGCAATCATCTGTGATGACT
TTTTCGTGCCTTCTCTGGAAGCGATCagtgaaaaacttgatttaTCAGAA
GATGTAGCAGGTGCCACCTTTATGGCGGCCGGCTCTTCAGCGCCGGAACT
TTTCACGTCAATTGTGGGTGTGACGGTCGAGAGTGACGTCGGTGTCGGAA
CTATAGTTGGGTAAGTTTTAAATCATTCTTATTTTGTTGAGTTTTTTTAT
CTCGAAAACTTATAAATAAACTGGTTGGTTTGTATTTGTAAAAAAGAGTT
AATTTCTGAGTTACTTTATATTATGGCGTTTTTGTTTCGCCTATAGGCAG
TGTTGAAGGCAACCTTCAGAAATATTTCTGTTTTAGCTCTTCAAGTAGAG
GCGAGGACTGACGCCACCAATCTTACTAATATCGTATAAAAAAGCATAGG
TATAATTTGATAgcttctttcatttttataggAGTGCCATATTCAATCTT
CTTGGTATTGTTGCATTATCGGCAGCTTTTGCTGGTCAGGTAAAAATAAT
TCTTAAAATCCAGTTGTTTCTATGTTTTTATTAAGCTGTTTTTCGTGAAA
TTACTCGAAACCGAGAGGCTGGGTTCGCTCAGtcaaaatcgggctcagtc
aaAATGGGAAACGGGGACGTGGTATTAGTAAGAGACCCCGCGACGGTTGC
AATTTCACTAAATTTCAAAGGGTGTATTCGACAGGGTCGAGTGTGGTTAT
TTTCATCGCTCTTTAGGGAGtgttttatgaagaaaaaagttATCATCTAG
CAAGGTCGATATTTTCATCAGAACTTCTGGATTCAAGATTTCGTCAGTTA
GGGTCaaatgtctactaaaaaattaTATCTCACAAGGCCAACTCCAGCAG
TAGGTCCCCATCGCCCGAAGGTCTGCTCCTGCCTCCTGGCTTATTGGTTT
TCGGCCCAGTTCTCTTTTGCATTGTTCATGTTTTATTTCTTTAGGTTCTA
CATCTTGATTGGCGACCCTTGACGCGTGACGCTGCATTTTACTGTTTTTC
TATTTGCTTTTTCATCATCTTTGCATGGGATGGCAAATTTGAAATCTACG
AAAGTGTCATTTTACTGGCCCTCTATTTTCTGTACATCCTTCTGATGAAA
TTCAATCCGAAGTTGATGGAGAAGATGGCTCAATGGGGGTAAGGTGTGGC
CGATTGTGTGTTCATATTGTCTACTGAAGCTGCCGTTCTAAAGTAAAGTC
TGCTCCAAATAAATGACAGTATGAACATTTCTTAAGTTCTTGAGATGAAC
ATGTATCATTAAAAGTAATATCTCTTTCGATTTAAATCTTCATGATCGAA
TTTTCCTCCGTCCTTCTAGATCACGAAAAGTGGATCCTTCATCTGACAAT
AGCAACAAAAGCGATAAAGAAGATGGCACAGAAACGGTAACATAACTTTT
ACTAAATAGTTTGTTTATTgtaaggggggggggcaagtGGGCAAATACAG
ATAGATGGATATACAGGATGACATAAAAAAATGTTGATGAAAAGTAAGAA
TTCCAATATATTAGGTAGGTAGTACAGTTTGAAAGATAGTTAACTAACTG
ATTGTCGGAAATGTCAGTGATTGTTCATATTTCGAagctcgaatgtctcc
ttaacttggacggttgttaatttttcgaaaatttcccaaccccccggacc
ttattaggaccccccctgtttattaatttttaagaatactttcagctgtc
aaagagaaggcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035286XLOC_035286Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056065-exon-scaffold_267-1491911889:25181..25261TCONS_00056065-exon-scaffold_267-1491911889:25181..25261Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1510915933:25181..25261TCONS_00056065-exon-scaffold_267-1510915933:25181..25261Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1575043694:25181..25261TCONS_00056065-exon-scaffold_267-1575043694:25181..25261Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1491911889:25519..25579TCONS_00056065-exon-scaffold_267-1491911889:25519..25579Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1510915933:25519..25579TCONS_00056065-exon-scaffold_267-1510915933:25519..25579Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1575043694:25519..25579TCONS_00056065-exon-scaffold_267-1575043694:25519..25579Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1491911889:30826..30940TCONS_00056065-exon-scaffold_267-1491911889:30826..30940Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1510915933:30826..30940TCONS_00056065-exon-scaffold_267-1510915933:30826..30940Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1575043694:30826..30940TCONS_00056065-exon-scaffold_267-1575043694:30826..30940Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1491911889:33659..33841TCONS_00056065-exon-scaffold_267-1491911889:33659..33841Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1510915933:33659..33841TCONS_00056065-exon-scaffold_267-1510915933:33659..33841Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1575043694:33659..33841TCONS_00056065-exon-scaffold_267-1575043694:33659..33841Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1491911889:42857..43040TCONS_00056065-exon-scaffold_267-1491911889:42857..43040Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1510915933:42857..43040TCONS_00056065-exon-scaffold_267-1510915933:42857..43040Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1575043694:42857..43040TCONS_00056065-exon-scaffold_267-1575043694:42857..43040Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1491911889:43312..43369TCONS_00056065-exon-scaffold_267-1491911889:43312..43369Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1510915933:43312..43369TCONS_00056065-exon-scaffold_267-1510915933:43312..43369Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1575043694:43312..43369TCONS_00056065-exon-scaffold_267-1575043694:43312..43369Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1491911889:43825..44018TCONS_00056065-exon-scaffold_267-1491911889:43825..44018Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1510915933:43825..44018TCONS_00056065-exon-scaffold_267-1510915933:43825..44018Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1575043694:43825..44018TCONS_00056065-exon-scaffold_267-1575043694:43825..44018Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1491911889:44200..44592TCONS_00056065-exon-scaffold_267-1491911889:44200..44592Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1510915933:44200..44592TCONS_00056065-exon-scaffold_267-1510915933:44200..44592Clytia hemisphaericaexon
TCONS_00056065-exon-scaffold_267-1575043694:44200..44592TCONS_00056065-exon-scaffold_267-1575043694:44200..44592Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:25181..44592 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0051111	0.681792	0	0	0	0	0	0	0	0	0	0	0	0	0.00215431	0	0	0	0	0	0	0	0	3.16749e-07	3.67921e-07	0	0.299394	0.156906	0.12549
Blast
[Close]
BLAST of TCONS_00056065 vs. Swiss-Prot (Human)
Match: NCKX3 (Sodium/potassium/calcium exchanger 3 OS=Homo sapiens GN=SLC24A3 PE=2 SV=4)

HSP 1 Score: 127.872 bits (320), Expect = 9.900e-32
Identity = 85/152 (55.92%), Postives = 115/152 (75.66%), Query Frame = 2 
Query:  392 KGWVALYCXXXXXXXXXXXXXCDDFFVPSLEAISEKLDLSEDVAGATFMAAGSSAPELFTSIVGVTV-ESDVGVGTIVGSAIFNLLGIVALSAAFAGQVLHLDWRPLTRDXXXXXXXXXXXXXXXWDGKFEIYESVXXXXXXXXXXXXMKFN 844
            +G V L+ +  + +F ALAI+CDDFFVPSLE I E+L LSEDVAGATFMAAGSSAPELFTS++GV + + DVGVGTIVGSA+FN+L I+ +   FAGQV+ L    L RD+ +Y  S+   I+F +D K   +ES++L+ +Y +YI++MK+N
Sbjct:  107 QGAVVLHVLCAIYMFYALAIVCDDFFVPSLEKICERLHLSEDVAGATFMAAGSSAPELFTSVIGVFITKGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVALSSWCLLRDSIYYTLSVIALIVFIYDEKVSWWESLVLVLMYLIYIVIMKYN 258
The following BLAST results are available for this feature:
BLAST of TCONS_00056065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCKX39.900e-3255.92Sodium/potassium/calcium exchanger 3 OS=Homo sapie... [more]
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