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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056073 ID=TCONS_00056073|Name=TCONS_00056073|organism=Clytia hemisphaerica|type=transcript|length=581bp
AGATAATGAGACTGCTAGagtggaaaaaaaaacatttacgtaAACATGAG
ATTTTTTGTTTAGTGTATTCTTTCACCAGTCCAAAATGCTGATTTTgtgt
aaaaattgaaaatcctttttacttttcataatctatgttttttttcaatt
ttcagaacTTTCAGCCAAAAATTCATCATGTATTAGTAAAGGTGACCCAG
TGAAAATCAACTTTGGGCGtggaaaaaatatgaaaactgGTCTTTGGCCT
TGGAAAATAAAATGTGGATATTGTGAAACATTGATAATGCTGAGACCTGA
CTCTAAATTGAAAGGGAAAGTCAGCAGTTTTGACCGCCAACATTACAAAC
AGTGCATTACGAAGGCTGGAAAGAGAAAGTCCGATGATCTTCCTAAGAAA
GCAGATTTTTTCGttcaaaaaccatcaaaaattcgaaaaactaAACCCCC
AAAGCCTCCAAAGGAAATGCACAAAACTGGTACCATCGAGACGGTTGACT
TGATCGACGATAATGATGTTTATTTTGATGATGGTCATTTAGTGATGGAC
GCAAGCGATGATTTGGGATTGAGTGAGAATG Run BLAST on NCBI protein sequence of TCONS_00056073-protein >TCONS_00056073-protein ID=TCONS_00056073-protein|Name=TCONS_00056073-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MKTGLWPWKIKCGYCETLIMLRPDSKLKGKVSSFDRQHYKQCITKAGKRK
SDDLPKKADFFVQKPSKIRKTKPPKPPKEMHKTGTIETVDLIDDNDVYFD
DGHLVMDASDDLGLSEN Run BLAST on NCBI transcript from alignment at scaffold_267:227775..229185+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056073 ID=TCONS_00056073|Name=TCONS_00056073|organism=Clytia hemisphaerica|type=transcript|length=1411bp|location=Sequence derived from alignment at scaffold_267:227775..229185+ (Clytia hemisphaerica)
AGATAATGAGACTGCTAGagtggaaaaaaaaacatttacgtaAACATGAG
ATTTTTTGTTTAGTGTATTCTTTCACCAGTCCAAAATGCTGATTTTgtgt
aaaaattgaaaatcctttttacttttcataatctatgttttttttcaatt
ttcagaacTTTCAGCCAAAAATTCATCATGTATTAGTAAAGGTGACCCAG
TGAAAATCAACTTTGGGCGtggaaaaaatatgaaaactgGTCTTTGGCCT
TGGAAAATAAAATGTGGATATTGTGAAACATTGATAATGCTGAGACCTGA
CTCTAAATTGAAAGGGAAAGTCAGCAGTTTTGACCGCCGTAAGTATTCAC
TATACTTATTGGATATTGTTACTAGATTTATTGCATTTATCCTGCTGgtg
attatttttgaattattttcaaattgatcAGAAATCTAAACAAATAACAA
TCATGATGTTGTTaatcattttgaatttgttgaGAAATCCCTTTGCACAT
CTTTAAGATTACTCATTATTCTAAacatcaaaatatatcaaattctTCAC
GCTATACTTTATCATGTTCACACCTGGTCTTAGCTTGAGGTAAGGTCAGG
TCATTAGGTACATTTTGCTCGTCTTGGAATTGATAGATTGTTGTAACTTT
ACTTTTACAGAACATTACAAACAGTGCATTACGAAGGCTGGAAAGAGAAA
GTCCGATGATCTTCCTAAGAAAGCAGATTTTTTCGttcaaaaaccatcaa
aaattcgaaaaactaAACCCCCAAAGCCTCCAAAGGAAATGCACAAAACT
GGTACCATCGAGACGGTTGACTTGATCGACGATAATGATGTTTATTTTGA
TGATGGTCATTTAGTGTGAGCATATCTCtatattttgcttttatttatat
ttcttttgtaCATTTTATAGTAAAACATGGTAGAAAAAGATGTTATGAGC
TAATCTGAGCCATaaatgctttaatttttaaacagAATATTGTTAAAATT
CACAAGCTTTAAAATTCCAGGGATGTAGGGGCTGCTCTTTTAAAGTGGTT
GCCAAAAACACAATGACAAAATAGTACACAATATGCATCattcaattttg
atgattttaattCCTTTTGGAAATAAACGACTTAGATTTACAATTTTCCA
AATCAAGCTTGTAATAAGATAcgaataaaaaaaataagatgaaaaataat
agaaatattaTGGTTGGCAAAACAAATTTCATGAGGTCAATATTCttagg
atattcttaatttttcggccaatttcatcatgaatattcttataaagtat
gttcttataaaaaaggcatGTAGGCGGGTTAATTATCAAATTAATTATCA
AagtcaaatctttcaaatttaagGATGGACGCAAGCGATGATTTGGGATT
GAGTGAGAATG Coding sequence (CDS) from alignment at scaffold_267:227775..229185+ >TCONS_00056073 ID=TCONS_00056073|Name=TCONS_00056073|organism=Clytia hemisphaerica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_267:227775..229185+ (Clytia hemisphaerica)
atgaaaactgGTCTTTGGCCTTGGAAAATAAAATGTGGATATTGTGAAAC
ATTGATAATGCTGAGACCTGACTCTAAATTGAAAGGGAAAGTCAGCAGTT
TTGACCGCCAACATTACAAACAGTGCATTACGAAGGCTGGAAAGAGAAAG
TCCGATGATCTTCCTAAGAAAGCAGATTTTTTCGttcaaaaaccatcaaa
aattcgaaaaactaAACCCCCAAAGCCTCCAAAGGAAATGCACAAAACTG
GTACCATCGAGACGGTTGACTTGATCGACGATAATGATGTTTATTTTGAT
GATGGTCATTTAGTGATGGACGCAAGCGATGATTTGGGATTGAGTGAGAA
TatgaaaactgGTCTTTGGCCTTGGAAAATAAAATGTGGATATTGTGAAA
CATTGATAATGCTGAGACCTGACTCTAAATTGAAAGGGAAAGTCAGCAGT
TTTGACCGCCAACATTACAAACAGTGCATTACGAAGGCTGGAAAGAGAAA
GTCCGATGATCTTCCTAAGAAAGCAGATTTTTTCGttcaaaaaccatcaa
aaattcgaaaaactaAACCCCCAAAGCCTCCAAAGGAAATGCACAAAACT
GGTACCATCGAGACGGTTGACTTGATCGACGATAATGATGTTTATTTTGA
TGATGGTCATTTAGTGATGGACGCAAGCGATGATTTGGGATTGAGTGAGA
ATatgaaaactgGTCTTTGGCCTTGGAAAATAAAATGTGGATATTGTGAA
ACATTGATAATGCTGAGACCTGACTCTAAATTGAAAGGGAAAGTCAGCAG
TTTTGACCGCCAACATTACAAACAGTGCATTACGAAGGCTGGAAAGAGAA
AGTCCGATGATCTTCCTAAGAAAGCAGATTTTTTCGttcaaaaaccatca
aaaattcgaaaaactaAACCCCCAAAGCCTCCAAAGGAAATGCACAAAAC
TGGTACCATCGAGACGGTTGACTTGATCGACGATAATGATGTTTATTTTG
ATGATGGTCATTTAGTGATGGACGCAAGCGATGATTTGGGATTGAGTGAG
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056073-exon-scaffold_267-1491911889:227775..228112 | TCONS_00056073-exon-scaffold_267-1491911889:227775..228112 | Clytia hemisphaerica | exon |
| TCONS_00056073-exon-scaffold_267-1510915933:227775..228112 | TCONS_00056073-exon-scaffold_267-1510915933:227775..228112 | Clytia hemisphaerica | exon |
| TCONS_00056073-exon-scaffold_267-1575043694:227775..228112 | TCONS_00056073-exon-scaffold_267-1575043694:227775..228112 | Clytia hemisphaerica | exon |
| TCONS_00056073-exon-scaffold_267-1491911889:228435..228639 | TCONS_00056073-exon-scaffold_267-1491911889:228435..228639 | Clytia hemisphaerica | exon |
| TCONS_00056073-exon-scaffold_267-1510915933:228435..228639 | TCONS_00056073-exon-scaffold_267-1510915933:228435..228639 | Clytia hemisphaerica | exon |
| TCONS_00056073-exon-scaffold_267-1575043694:228435..228639 | TCONS_00056073-exon-scaffold_267-1575043694:228435..228639 | Clytia hemisphaerica | exon |
| TCONS_00056073-exon-scaffold_267-1491911889:229148..229185 | TCONS_00056073-exon-scaffold_267-1491911889:229148..229185 | Clytia hemisphaerica | exon |
| TCONS_00056073-exon-scaffold_267-1510915933:229148..229185 | TCONS_00056073-exon-scaffold_267-1510915933:229148..229185 | Clytia hemisphaerica | exon |
| TCONS_00056073-exon-scaffold_267-1575043694:229148..229185 | TCONS_00056073-exon-scaffold_267-1575043694:229148..229185 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:227775..229185 + |
Blast
The following BLAST results are available for this feature:
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