TCONS_00056091 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056091
Unique NameTCONS_00056091
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length310

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056091 ID=TCONS_00056091|Name=TCONS_00056091|organism=Clytia hemisphaerica|type=transcript|length=310bp
atgcACAGTTTCACGTTGGCAGAACATAAAAAATTGCCTCCGTCATTGCT
GGGTATTGCCATAAAACAAAACGAGGAAAACTTTTCATGGCCAAGGACGT
TATTATTAACGAAAATATGAATGCTTCAATAACAGGTATGCCAAGTGAAA
CAAACAATCAGGACTTAACAGCGGTTGACTCGGAAAACCAAAATGATCCG
GATTCAGACAAAGAAAGTCTACATCCCAGTGGGCACACAAAGTCTTGAGG
ACGTCCTTGCGCCGTGCAAATCAGGTCCGCCCGTCAGCATATCGTCCCCG
TCCAAATAGG
Run BLAST on NCBI

transcript from alignment at scaffold_267:385478..386395-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056091 ID=TCONS_00056091|Name=TCONS_00056091|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at scaffold_267:385478..386395- (Clytia hemisphaerica)
ATGCACAGTTTCACGTTGGCAGAACATAAAAAATTGCCTCCGTCATTGCT
GGGTATTGCCATAAAACAAAACGAGGGTAAAATTATAATTATAATAATAA
TTTTTTTACAGCCCTCAATTTGGCACAGTTCTGATACTCTGTACCTCATA
CAGGGTATCAGAACTGTGCCAAATTGAGGGCTGTAAAAAAATTATGAAGC
CTTTTAATGATCTTACCCGACACTTAAGAATTTCGCACGATCTTACTAGA
AAAGAGTATAATGAAAAAAGGTATTTTTGGGTTTTACTAACTTCTACTAC
TTTTCAGTTCTAAAATTCAGCGTTTTCAAGTATTACAATTTCGAAAGAAT
TAAAATGATTATAATGTATGCAAAACTTTTAGCTCTACTCTATTCGTACT
AAGGGAGGGGGTGTTCATGATGTGGGACTGATAGCTACTGAAATAAAAAT
GCTATGCCAAGAATATTTTGTGTCTTTTCCTAACGAATAAGGTTAAATCA
AGTTGTCTTATTTTAGAAAACTTTTCATGGCCAAGGACGTTATTATTAAC
GAAAATATGAATGCTTCAATAACAGGTGATTTTCAATAATTTAGCTTTGT
GAATTTAAATTTTAAAGAATCTCGCTATTGCAACAATGAGTTTCTTTTAA
AAAACATTCTGGTCGTTTGACTGGAAAATAGTTTTAAAACTAGTTTATTC
GTATAGTAACTAACTATACACTCCTTCTACTATGGCTTTTTAGGTATGCC
AAGTGAAACAAACAATCAGGACTTAACAGCGGTTGACTCGGAAAACCAAA
ATGATCCGGATTCAGACAAAGAAAGTCTACATCCCAGTGGGCACACAAAG
TCTTGAGGACGTCCTTGCGCCGTGCAAATCAGGTCCGCCCGTCAGCATAT
CGTCCCCGTCCAAATAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035300XLOC_035300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056091-exon-scaffold_267-1575043694:386320..386395TCONS_00056091-exon-scaffold_267-1575043694:386320..386395Clytia hemisphaericaexon
TCONS_00056091-exon-scaffold_267-1575043694:385821..385879TCONS_00056091-exon-scaffold_267-1575043694:385821..385879Clytia hemisphaericaexon
TCONS_00056091-exon-scaffold_267-1575043694:385478..385652TCONS_00056091-exon-scaffold_267-1575043694:385478..385652Clytia hemisphaericaexon
TCONS_00056091-exon-scaffold_267-1510915933:386320..386395TCONS_00056091-exon-scaffold_267-1510915933:386320..386395Clytia hemisphaericaexon
TCONS_00056091-exon-scaffold_267-1510915933:385821..385879TCONS_00056091-exon-scaffold_267-1510915933:385821..385879Clytia hemisphaericaexon
TCONS_00056091-exon-scaffold_267-1510915933:385478..385652TCONS_00056091-exon-scaffold_267-1510915933:385478..385652Clytia hemisphaericaexon
TCONS_00056091-exon-scaffold_267-1491911889:386320..386395TCONS_00056091-exon-scaffold_267-1491911889:386320..386395Clytia hemisphaericaexon
TCONS_00056091-exon-scaffold_267-1491911889:385821..385879TCONS_00056091-exon-scaffold_267-1491911889:385821..385879Clytia hemisphaericaexon
TCONS_00056091-exon-scaffold_267-1491911889:385478..385652TCONS_00056091-exon-scaffold_267-1491911889:385478..385652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:385478..386395 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.491908	0.499402	5.15813	6.2073	5.33586	6.36585	4.29783	4.92022	1.93007	2.10616	3.25812	5.65114	0.746975	0.575004	3.50045	0.5403	1.18503	1.35019	0	0	2.59773	1.48411	1.5323	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056091 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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