TCONS_00056103 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056103
Unique NameTCONS_00056103
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1078

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=transcript|length=1078bp
TCCATATCAAGTTTCTCTCACGGAAGAAGTTCAACAGAAGTTGACACATC
AACATGAAATCAATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGC
ACAAAATTTGACATGGCCAAAATACCCGGAACAATTCAAATTCACAACAA
GTGGACCTATCCCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGAT
CCTGTGTGGGCTCgtcaaacaaattatttttgtcaCGAAGCTGGAGAAAA
CATTCGCAATATCGGAATGAGATGGTCATTTACAGGCAGAATCTCTACCA
TGAAGTGTCGGCCAGTCTATGAACCGTCAGAGTCTGCAAAATACAAATGG
CTTGACAACTTCATTTGTGTACCAATAGATGCTCCTTACGAATTCCAATT
TTTCAACTACGTTCCGCGAATGAATTACAGATGTCGTTGTCTCCAATGGT
ACAATGCTAAAGATCCGGACACATGGGCAGATAATTTCTTGTGTGACTGG
AGAGTTTCTTGCTAGTctatctaatttttttaaatcattttattACTGGA
TTATTACTGGAAGACaataaaaatacttttgaaattAACCTTACTAGTTT
TCGTCAATTTTGGCGATGGGGTCATCATTTGGGCCCTTTTGGTACTGGAA
TCTGGACACCTATATCTCATGATCGGCTTCTCCGTTTACTTTCAAATTAG
GCATGTGATACCTTGACAATAACGCCTTGAAATTAACCtaataagatttt
gtcaattttggtgatgacgtcatcatttgagTCCTTTTTGGTACTGGTAT
CCGGAAACCTATGCCTCGTGATGGGCTTTTGAGATAACGAACGAGATAAC
TCCTAAACCTATCAATTTTCGGTTCAGGTCTTAGGTTGCTTTGCATTCTA
Gctcattctttgaaaaaaatctgctttgacaacccctgatattatactat
attcatgcttgggtcaagggctatcgtttgcaATTCTTAGATTATTTAAA
AAGCTCCTACTTTATGTGACAGAGAAAATTCTTTTGGTTGATTTCAGGGC
TTGAGCTTTAGCTTTAGAAAGAAATGTG
Run BLAST on NCBI

protein sequence of TCONS_00056103-protein

>TCONS_00056103-protein ID=TCONS_00056103-protein|Name=TCONS_00056103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MKSIIALLLLAVAANAQNLTWPKYPEQFKFTTSGPIPGYTCIQIQEPSDP
VWARQTNYFCHEAGENIRNIGMRWSFTGRISTMKCRPVYEPSESAKYKWL
DNFICVPIDAPYEFQFFNYVPRMNYRCRCLQWYNAKDPDTWADNFLCDWR
VSC
Run BLAST on NCBI

transcript from alignment at scaffold_267:558320..559642-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at scaffold_267:558320..559642- (Clytia hemisphaerica)
TCCATATCAAGTTTCTCTCACGGAAGAAGTTCAACAGAAGTTGACACATC AACATGAAATCAATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGC ACAAAATTTGACATGGCCAAAATACCCGGAACAATTCAAATTCACAACAA GTGGACCTATCCCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGAT CCTGTGTGGGCTCGTCAAACAAATTATTTTTGTCACGAAGCTGGAGAAAA CATTCGCAATATCGGAATGAGATGGTCATTTACAGGTTCGTTAACTTATA CTAACATTTATTTCTTTTAGATTCGCATTCCAGAAATAGTCCGTGCCCCC CCCCCTCTGTTGAGGATATTGGATATCCAGGGGGTTAACGATTTTTGTTA AAAAGTGGATATCCAGGGGGTTAGATATCTACAAGGGAGCGGATATCCAG GGGTAAAGTAAATTGCTAATGAAAATCAAATTGTTCTCTGTACCTGTATA TAATTAAATTTTTCTTGAATTTTTCTTTAGGCAGAATCTCTACCATGAAG TGTCGGCCAGTCTATGAACCGTCAGAGTCTGCAAAATACAAATGGCTTGA CAACTTCATTTGTGTACCAATAGATGCTCCTTACGAATTCCAATTTTTCA ACTACGTTCCGCGAATGAATTACAGATGTCGTTGTCTCCAATGGTACAAT GCTAAAGATCCGGACACATGGGCAGATAATTTCTTGTGTGACTGGAGAGT TTCTTGCTAGTCTATCTAATTTTTTTAAATCATTTTATTACTGGATTATT ACTGGAAGACAATAAAAATACTTTTGAAATTAACCTTACTAGTTTTCGTC AATTTTGGCGATGGGGTCATCATTTGGGCCCTTTTGGTACTGGAATCTGG ACACCTATATCTCATGATCGGCTTCTCCGTTTACTTTCAAATTAGGCATG TGATACCTTGACAATAACGCCTTGAAATTAACCTAATAAGATTTTGTCAA TTTTGGTGATGACGTCATCATTTGAGTCCTTTTTGGTACTGGTATCCGGA AACCTATGCCTCGTGATGGGCTTTTGAGATAACGAACGAGATAACTCCTA AACCTATCAATTTTCGGTTCAGGTCTTAGGTTGCTTTGCATTCTAGCTCA TTCTTTGAAAAAAATCTGCTTTGACAACCCCTGATATTATACTATATTCA TGCTTGGGTCAAGGGCTATCGTTTGCAATTCTTAGATTATTTAAAAAGCT CCTACTTTATGTGACAGAGAAAATTCTTTTGGTTGATTTCAGGGCTTGAG CTTTAGCTTTAGAAAGAAATGTG

Coding sequence (CDS) from alignment at scaffold_267:558320..559642-

>TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_267:558320..559642- (Clytia hemisphaerica)
GCAGAATCTCTACCATGAAGTGTCGGCCAGTCTATGAACCGTCAGAGTCT
GCAAAATACAAATGGCTTGACAACTTCATTTGTGTACCAATAGATGCTCC
TTACGAATTCCAATTTTTCAACTACGTTCCGCGAATGAATTACAGATGTC
GTTGTCTCCAATGGTACAATGCTAAAGATCCGGACACATGGGCAGATAAT
TTCTTGTGTGACTGGAGAGTTTCTTGCTAGATGAAATCAATAATAGCTTT
ACTGCTACTGGCCGTAGCTGCTAACGCACAAAATTTGACATGGCCAAAAT
ACCCGGAACAATTCAAATTCACAACAAGTGGACCTATCCCTGGGTACACA
TGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGCTCGTCAAACAAA
TTATTTTTGTCACGAAGCTGGAGAAAACATTCGCAATATCGGAATGAGAT
GGTCATTTACAGGCAGAATCTCTACCATGAAGTGTCGGCCAGTCTATGAA
CCGTCAGAGTCTGCAAAATACAAATGGCTTGACAACTTCATTTGTGTACC
AATAGATGCTCCTTACGAATTCCAATTTTTCAACTACGTTCCGCGAATGA
ATTACAGATGTCGTTGTCTCCAATGGTACAATGCTAAAGATCCGGACACA
TGGGCAGATAATTTCTTGTGTGACTGGAGAGTTTCTTGCTAGATGAAATC
AATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGCACAAAATTTGA
CATGGCCAAAATACCCGGAACAATTCAAATTCACAACAAGTGGACCTATC
CCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGC
TCGTCAAACAAATTATTTTTGTCACGAAGCTGGAGAAAACATTCGCAATA
TCGGAATGAGATGGTCATTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035306XLOC_035306Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056103-proteinTCONS_00056103-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056103-exon-scaffold_267-1575043694:559358..559642TCONS_00056103-exon-scaffold_267-1575043694:559358..559642Clytia hemisphaericaexon
TCONS_00056103-exon-scaffold_267-1575043694:558320..559112TCONS_00056103-exon-scaffold_267-1575043694:558320..559112Clytia hemisphaericaexon
TCONS_00056103-exon-scaffold_267-1510915933:559358..559642TCONS_00056103-exon-scaffold_267-1510915933:559358..559642Clytia hemisphaericaexon
TCONS_00056103-exon-scaffold_267-1510915933:558320..559112TCONS_00056103-exon-scaffold_267-1510915933:558320..559112Clytia hemisphaericaexon
TCONS_00056103-exon-scaffold_267-1491911889:559358..559642TCONS_00056103-exon-scaffold_267-1491911889:559358..559642Clytia hemisphaericaexon
TCONS_00056103-exon-scaffold_267-1491911889:558320..559112TCONS_00056103-exon-scaffold_267-1491911889:558320..559112Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:558320..559642 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (48.9672 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0796234 0.184901 0 0.330336 0.043506 0.209953 0.0982776 0.10321 0.042614 0 0.163139 4.66445 4.73582 14.1786 48.9672 2.28249 1.8791 13.1343 13.374 0.327698 0.663059 0.280861 0.0484711 0.525996 0.782398 0.167941 0.0597439 0.181254 0.262915
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
1002003004005006007008009001000Sequence
Match NameE-valueIdentityDescription
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