Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=transcript|length=1078bp TCCATATCAAGTTTCTCTCACGGAAGAAGTTCAACAGAAGTTGACACATC AACATGAAATCAATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGC ACAAAATTTGACATGGCCAAAATACCCGGAACAATTCAAATTCACAACAA GTGGACCTATCCCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGAT CCTGTGTGGGCTCgtcaaacaaattatttttgtcaCGAAGCTGGAGAAAA CATTCGCAATATCGGAATGAGATGGTCATTTACAGGCAGAATCTCTACCA TGAAGTGTCGGCCAGTCTATGAACCGTCAGAGTCTGCAAAATACAAATGG CTTGACAACTTCATTTGTGTACCAATAGATGCTCCTTACGAATTCCAATT TTTCAACTACGTTCCGCGAATGAATTACAGATGTCGTTGTCTCCAATGGT ACAATGCTAAAGATCCGGACACATGGGCAGATAATTTCTTGTGTGACTGG AGAGTTTCTTGCTAGTctatctaatttttttaaatcattttattACTGGA TTATTACTGGAAGACaataaaaatacttttgaaattAACCTTACTAGTTT TCGTCAATTTTGGCGATGGGGTCATCATTTGGGCCCTTTTGGTACTGGAA TCTGGACACCTATATCTCATGATCGGCTTCTCCGTTTACTTTCAAATTAG GCATGTGATACCTTGACAATAACGCCTTGAAATTAACCtaataagatttt gtcaattttggtgatgacgtcatcatttgagTCCTTTTTGGTACTGGTAT CCGGAAACCTATGCCTCGTGATGGGCTTTTGAGATAACGAACGAGATAAC TCCTAAACCTATCAATTTTCGGTTCAGGTCTTAGGTTGCTTTGCATTCTA Gctcattctttgaaaaaaatctgctttgacaacccctgatattatactat attcatgcttgggtcaagggctatcgtttgcaATTCTTAGATTATTTAAA AAGCTCCTACTTTATGTGACAGAGAAAATTCTTTTGGTTGATTTCAGGGC TTGAGCTTTAGCTTTAGAAAGAAATGTG Run BLAST on NCBI protein sequence of TCONS_00056103-protein >TCONS_00056103-protein ID=TCONS_00056103-protein|Name=TCONS_00056103-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MKSIIALLLLAVAANAQNLTWPKYPEQFKFTTSGPIPGYTCIQIQEPSDP VWARQTNYFCHEAGENIRNIGMRWSFTGRISTMKCRPVYEPSESAKYKWL DNFICVPIDAPYEFQFFNYVPRMNYRCRCLQWYNAKDPDTWADNFLCDWR VSC Run BLAST on NCBI transcript from alignment at scaffold_267:558320..559642- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=transcript|length=1323bp|location=Sequence derived from alignment at scaffold_267:558320..559642- (Clytia hemisphaerica) TCCATATCAAGTTTCTCTCACGGAAGAAGTTCAACAGAAGTTGACACATC
AACATGAAATCAATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGC
ACAAAATTTGACATGGCCAAAATACCCGGAACAATTCAAATTCACAACAA
GTGGACCTATCCCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGAT
CCTGTGTGGGCTCGTCAAACAAATTATTTTTGTCACGAAGCTGGAGAAAA
CATTCGCAATATCGGAATGAGATGGTCATTTACAGGTTCGTTAACTTATA
CTAACATTTATTTCTTTTAGATTCGCATTCCAGAAATAGTCCGTGCCCCC
CCCCCTCTGTTGAGGATATTGGATATCCAGGGGGTTAACGATTTTTGTTA
AAAAGTGGATATCCAGGGGGTTAGATATCTACAAGGGAGCGGATATCCAG
GGGTAAAGTAAATTGCTAATGAAAATCAAATTGTTCTCTGTACCTGTATA
TAATTAAATTTTTCTTGAATTTTTCTTTAGGCAGAATCTCTACCATGAAG
TGTCGGCCAGTCTATGAACCGTCAGAGTCTGCAAAATACAAATGGCTTGA
CAACTTCATTTGTGTACCAATAGATGCTCCTTACGAATTCCAATTTTTCA
ACTACGTTCCGCGAATGAATTACAGATGTCGTTGTCTCCAATGGTACAAT
GCTAAAGATCCGGACACATGGGCAGATAATTTCTTGTGTGACTGGAGAGT
TTCTTGCTAGTCTATCTAATTTTTTTAAATCATTTTATTACTGGATTATT
ACTGGAAGACAATAAAAATACTTTTGAAATTAACCTTACTAGTTTTCGTC
AATTTTGGCGATGGGGTCATCATTTGGGCCCTTTTGGTACTGGAATCTGG
ACACCTATATCTCATGATCGGCTTCTCCGTTTACTTTCAAATTAGGCATG
TGATACCTTGACAATAACGCCTTGAAATTAACCTAATAAGATTTTGTCAA
TTTTGGTGATGACGTCATCATTTGAGTCCTTTTTGGTACTGGTATCCGGA
AACCTATGCCTCGTGATGGGCTTTTGAGATAACGAACGAGATAACTCCTA
AACCTATCAATTTTCGGTTCAGGTCTTAGGTTGCTTTGCATTCTAGCTCA
TTCTTTGAAAAAAATCTGCTTTGACAACCCCTGATATTATACTATATTCA
TGCTTGGGTCAAGGGCTATCGTTTGCAATTCTTAGATTATTTAAAAAGCT
CCTACTTTATGTGACAGAGAAAATTCTTTTGGTTGATTTCAGGGCTTGAG
CTTTAGCTTTAGAAAGAAATGTG Coding sequence (CDS) from alignment at scaffold_267:558320..559642- >TCONS_00056103 ID=TCONS_00056103|Name=TCONS_00056103|organism=Clytia hemisphaerica|type=CDS|length=924bp|location=Sequence derived from alignment at scaffold_267:558320..559642- (Clytia hemisphaerica) GCAGAATCTCTACCATGAAGTGTCGGCCAGTCTATGAACCGTCAGAGTCT GCAAAATACAAATGGCTTGACAACTTCATTTGTGTACCAATAGATGCTCC TTACGAATTCCAATTTTTCAACTACGTTCCGCGAATGAATTACAGATGTC GTTGTCTCCAATGGTACAATGCTAAAGATCCGGACACATGGGCAGATAAT TTCTTGTGTGACTGGAGAGTTTCTTGCTAGATGAAATCAATAATAGCTTT ACTGCTACTGGCCGTAGCTGCTAACGCACAAAATTTGACATGGCCAAAAT ACCCGGAACAATTCAAATTCACAACAAGTGGACCTATCCCTGGGTACACA TGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGCTCGTCAAACAAA TTATTTTTGTCACGAAGCTGGAGAAAACATTCGCAATATCGGAATGAGAT GGTCATTTACAGGCAGAATCTCTACCATGAAGTGTCGGCCAGTCTATGAA CCGTCAGAGTCTGCAAAATACAAATGGCTTGACAACTTCATTTGTGTACC AATAGATGCTCCTTACGAATTCCAATTTTTCAACTACGTTCCGCGAATGA ATTACAGATGTCGTTGTCTCCAATGGTACAATGCTAAAGATCCGGACACA TGGGCAGATAATTTCTTGTGTGACTGGAGAGTTTCTTGCTAGATGAAATC AATAATAGCTTTACTGCTACTGGCCGTAGCTGCTAACGCACAAAATTTGA CATGGCCAAAATACCCGGAACAATTCAAATTCACAACAAGTGGACCTATC CCTGGGTACACATGTATTCAGATCCAAGAACCTTCTGATCCTGTGTGGGC TCGTCAAACAAATTATTTTTGTCACGAAGCTGGAGAAAACATTCGCAATA TCGGAATGAGATGGTCATTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056103-exon-scaffold_267-1575043694:559358..559642 | TCONS_00056103-exon-scaffold_267-1575043694:559358..559642 | Clytia hemisphaerica | exon |
TCONS_00056103-exon-scaffold_267-1575043694:558320..559112 | TCONS_00056103-exon-scaffold_267-1575043694:558320..559112 | Clytia hemisphaerica | exon |
TCONS_00056103-exon-scaffold_267-1510915933:559358..559642 | TCONS_00056103-exon-scaffold_267-1510915933:559358..559642 | Clytia hemisphaerica | exon |
TCONS_00056103-exon-scaffold_267-1510915933:558320..559112 | TCONS_00056103-exon-scaffold_267-1510915933:558320..559112 | Clytia hemisphaerica | exon |
TCONS_00056103-exon-scaffold_267-1491911889:559358..559642 | TCONS_00056103-exon-scaffold_267-1491911889:559358..559642 | Clytia hemisphaerica | exon |
TCONS_00056103-exon-scaffold_267-1491911889:558320..559112 | TCONS_00056103-exon-scaffold_267-1491911889:558320..559112 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_267 | supercontig | scaffold_267:558320..559642 - |
Blast
The following BLAST results are available for this feature:
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