TCONS_00056107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056107
Unique NameTCONS_00056107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056107 ID=TCONS_00056107|Name=TCONS_00056107|organism=Clytia hemisphaerica|type=transcript|length=1475bp
CTACGATGTATCGAAACGGCATCGCGAAAAAGGGTAAAAACAATGGAACT
GCAGAATCCATTGTCTTAAGAGGGTATAAAAACCCTGTCTTTAACAGTAG
ACAAAATCATCATTCACAACCATCACATTGTTTTCATCGCAgaaaaatat
aactttcaagATGTCATCAGAGGAGGCAATGAACGCTGCATTAAATGCAC
TTGcagatttacaaaaaaaaATGAACAGTCAGTCATCTCATTCAGAGAAT
ATCTCCAAATCTATCGAGAGTctgcaaaaagatttgaaagattCGGAGAA
GAAAGCCAAGGGAAATGCTTACATCAACGGTGCAAACGGGGTTGTCCAAG
TCGCTCAAAGTGTTGTCAACAACTTAGACAAGTTCACCTCTGGTGATGCT
TTGGGTATAGCATCAGGCGCCCTCGCGATCATTGGAACGATTGGAGGTGT
CGTTGGTGGACCCGCTGGTCCGCTCATTGCTGGTGTGTGTTGCTTAGTTG
CATCCATTCTACCCTTATTTGGTGGCAGCAGTGGACCATCCATGGGAGAA
GTCTTGGAAAAAGTCATCAAAGAAGCATTAGCAGACTTTAAAGATGAAGA
AATCTACGGACAAGTCCTTGGATCTTTAAGGTTGATGAAACCTCAAATGG
TAGAACTTAATGGAATCGCTGAAAAGAATGGTGGGCttttgaaagaaagt
gaaaaaagctttttgaCAACATTGGATTTCTCTACGGCTGGTGTAGAGAT
TCTTGGAGCATTGCAAGCACAATTGGATAGGCACAAGGATACCACTAACG
AGACAGAGGCTACCCGGTTGGCAACCTATTGCTACTACTATTCCATGATA
TCAACCCAAAAACGATTAATCTTAACACTTCAATGTGCTCTTCTTCGCCG
TAATGATATGGAGGCTATCTATCATGGGGTAAAAAGTTACTTGGACAACG
CCTTGCTAGAAGAAGATAagaaaactttcaagtttttgatAGATTTACCA
AACAACGGAAAATGGTGGCTTTTATACCGTTATATACACAGAGTTGGAAG
CACCACAGCGTTCTATCATCTCAAACTTTCTAAAAGTTATCGGATGTGAG
ATCAAAGGGCAACTTTGTTTTCTCTATAATGAATACATGGAGCAATATAT
GTTTACACCAACAAATGGGAGCGCAGAATTTGCATGGGATAAGCTCAGAC
GTAACATCTTTACCGCACCAGAGGAGAGGTCATCCTTCAGTTGCAAGCTT
TACCGACTGATAGGACCTCGTGACAACTGTCAAATACTTTCTGTTCACTA
TAGTGAGTATTTGTATGCACCTGATTACGCCACAATGGATAGCCAACGTC
GCCGTGTCTTCTCCTGGCGTTCTGGNCACCTGATTACGCCGCAATGGATA
GCCAACGTCGCCGTGTCTTCTCCTGGCGTTCTGGTGAAAACCCTGGAAGT
CAAGAATACTGGGAAGTTACCAACG
Run BLAST on NCBI

protein sequence of TCONS_00056107-protein

>TCONS_00056107-protein ID=TCONS_00056107-protein|Name=TCONS_00056107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp
MSSEEAMNAALNALADLQKKMNSQSSHSENISKSIESLQKDLKDSEKKAK
GNAYINGANGVVQVAQSVVNNLDKFTSGDALGIASGALAIIGTIGGVVGG
PAGPLIAGVCCLVASILPLFGGSSGPSMGEVLEKVIKEALADFKDEEIYG
QVLGSLRLMKPQMVELNGIAEKNGGLLKESEKSFLTTLDFSTAGVEILGA
LQAQLDRHKDTTNETEATRLATYCYYYSMISTQKRLILTLQCALLRRNDM
EAIYHGVKSYLDNALLEEDKKTFKFLIDLPNNGKWWLLYRYIHRVGSTTA
FYHLKLSKSYRM
Run BLAST on NCBI

transcript from alignment at scaffold_267:609992..611982-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056107 ID=TCONS_00056107|Name=TCONS_00056107|organism=Clytia hemisphaerica|type=transcript|length=1991bp|location=Sequence derived from alignment at scaffold_267:609992..611982- (Clytia hemisphaerica)
CTACGATGTATCGAAACGGCATCGCGAAAAAGGGTAAAAACAATGGAACT
GCAGAATCCATTGTCTTAAGAGGGTATAAAAACCCTGTCTTTAACAGTAG
ACAAAATCATCATTCACAACCATCACATTGTTTTCATCGCAGAAAAATAT
AACTTTCAAGATGTCATCAGAGGAGGCAATGAACGCTGCATTAAATGCAC
TTGCAGATTTACAAAAAAAAGTAAGCTCAGATATTATTTTAAGGCCCTAA
CCAACGACTTGCAAATTAACTTACGGGTTGATGCCGTAGACTTGACTTTT
ACAGGAACTTTAAATATCCAAGAAAGGCACCCTAAAGAGTGGAACATACC
CCCTGGCTCCAATATCTTTAGATAATTTACTACTTCAATCCTTTATAAAT
TTAAGTATTTTAGACAAGGGAACAGACACTCCGGGAACTGGGGTCTGAGT
ATGACGGTATAGATTTCGATTTTTTACAGCTTAAAAAACAGAAGTTACAT
CATAGGTCAGATTTTTTCCTAAGAGAATATGAAAGTTCCATTGGTCTCTG
TCTCGCTTTGACCTTTGAAGTCTTTTGAGCAGTGATTTTTTTGGCCTTTC
AATTTAACATATTATTTTCAACAGGAGTTACTAAGCCTGGAAAAAGCGTG
CGAGGGGTTGGCCAATATTAGAACATTATCCTACGGTGTCGAATTTTGTT
TAAATGTAGTGAGATTTTGATTTTATTTAACTTTAGATGAACAGTCAGTC
ATCTCATTCAGAGAATATCTCCAAATCTATCGAGAGTCTGCAAAAAGATT
TGAAAGATTCGGAGAAGAAAGCCAAGGGAAATGCTTACATCAACGGTGCA
AACGGGGTTGTCCAAGTCGCTCAAAGTGTTGTCAACAACTTAGACAAGTT
CACCTCTGGTGATGCTTTGGGTATAGCATCAGGCGCCCTCGCGATCATTG
GAACGATTGGAGGTGTCGTTGGTGGACCCGCTGGTCCGCTCATTGCTGGT
GTGTGTTGCTTAGTTGCATCCATTCTACCCTTATTTGGTGGCAGCAGTGG
ACCATCCATGGGAGAAGTCTTGGAAAAAGTCATCAAAGAAGCATTAGCAG
ACTTTAAAGATGAAGAAATCTACGGACAAGTCCTTGGATCTTTAAGGTTG
ATGAAACCTCAAATGGTAGAACTTAATGGAATCGCTGAAAAGAATGGTGG
GCTTTTGAAAGAAAGTGAAAAAAGCTTTTTGACAACATTGGATTTCTCTA
CGGCTGGTGTAGAGATTCTTGGAGCATTGCAAGCACAATTGGATAGGCAC
AAGGATACCACTAACGAGACAGAGGCTACCCGGTTGGCAACCTATTGCTA
CTACTATTCCATGATATCAACCCAAAAACGATTAATCTTAACACTTCAAT
GTGCTCTTCTTCGCCGTAATGATATGGAGGCTATCTATCATGGGGTAAAA
AGTTACTTGGACAACGCCTTGCTAGAAGAAGATAAGAAAACTTTCAAGTT
TTTGATAGATTTACCAAACAACGGAAAATGGTGGCTTTTATACCGTTATA
TACACAGAGTTGGAAGCACCACAGCGTTCTATCATCTCAAACTTTCTAAA
AGTTATCGGATGTGAGATCAAAGGGCAACTTTGTTTTCTCTATAATGAAT
ACATGGAGCAATATATGTTTACACCAACAAATGGGAGCGCAGAATTTGCA
TGGGATAAGCTCAGACGTAACATCTTTACCGCACCAGAGGAGAGGTCATC
CTTCAGTTGCAAGCTTTACCGACTGATAGGACCTCGTGACAACTGTCAAA
TACTTTCTGTTCACTATAGTGAGTATTTGTATGCACCTGATTACGCCACA
ATGGATAGCCAACGTCGCCGTGTCTTCTCCTGGCGTTCTGGNCACCTGAT
TACGCCGCAATGGATAGCCAACGTCGCCGTGTCTTCTCCTGGCGTTCTGG
TGAAAACCCTGGAAGTCAAGAATACTGGGAAGTTACCAACG

Coding sequence (CDS) from alignment at scaffold_267:609992..611982-

>TCONS_00056107 ID=TCONS_00056107|Name=TCONS_00056107|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at scaffold_267:609992..611982- (Clytia hemisphaerica)
ATGAACAGTCAGTCATCTCATTCAGAGAATATCTCCAAATCTATCGAGAG
TCTGCAAAAAGATTTGAAAGATTCGGAGAAGAAAGCCAAGGGAAATGCTT
ACATCAACGGTGCAAACGGGGTTGTCCAAGTCGCTCAAAGTGTTGTCAAC
AACTTAGACAAGTTCACCTCTGGTGATGCTTTGGGTATAGCATCAGGCGC
CCTCGCGATCATTGGAACGATTGGAGGTGTCGTTGGTGGACCCGCTGGTC
CGCTCATTGCTGGTGTGTGTTGCTTAGTTGCATCCATTCTACCCTTATTT
GGTGGCAGCAGTGGACCATCCATGGGAGAAGTCTTGGAAAAAGTCATCAA
AGAAGCATTAGCAGACTTTAAAGATGAAGAAATCTACGGACAAGTCCTTG
GATCTTTAAGGTTGATGAAACCTCAAATGGTAGAACTTAATGGAATCGCT
GAAAAGAATGGTGGGCTTTTGAAAGAAAGTGAAAAAAGCTTTTTGACAAC
ATTGGATTTCTCTACGGCTGGTGTAGAGATTCTTGGAGCATTGCAAGCAC
AATTGGATAGGCACAAGGATACCACTAACGAGACAGAGGCTACCCGGTTG
GCAACCTATTGCTACTACTATTCCATGATATCAACCCAAAAACGATTAAT
CTTAACACTTCAATGTGCTCTTCTTCGCCGTAATGATATGGAGGCTATCT
ATCATGGGGTAAAAAGTTACTTGGACAACGCCTTGCTAGAAGAAGATAAG
AAAACTTTCAAGTTTTTGATAGATTTACCAAACAACGGAAAATGGTGGCT
TTTATACCGTTATATACACAGAGTTGGAAGCACCACAGCGTTCTATCATC
TCAAACTTTCTAAAAGTTATCGGATGTGAATGTCATCAGAGGAGGCAATG
AACGCTGCATTAAATGCACTTGCAGATTTACAAAAAAAAATGAACAGTCA
GTCATCTCATTCAGAGAATATCTCCAAATCTATCGAGAGTCTGCAAAAAG
ATTTGAAAGATTCGGAGAAGAAAGCCAAGGGAAATGCTTACATCAACGGT
GCAAACGGGGTTGTCCAAGTCGCTCAAAGTGTTGTCAACAACTTAGACAA
GTTCACCTCTGGTGATGCTTTGGGTATAGCATCAGGCGCCCTCGCGATCA
TTGGAACGATTGGAGGTGTCGTTGGTGGACCCGCTGGTCCGCTCATTGCT
GGTGTGTGTTGCTTAGTTGCATCCATTCTACCCTTATTTGGTGGCAGCAG
TGGACCATCCATGGGAGAAGTCTTGGAAAAAGTCATCAAAGAAGCATTAG
CAGACTTTAAAGATGAAGAAATCTACGGACAAGTCCTTGGATCTTTAAGG
TTGATGAAACCTCAAATGGTAGAACTTAATGGAATCGCTGAAAAGAATGG
TGGGCTTTTGAAAGAAAGTGAAAAAAGCTTTTTGACAACATTGGATTTCT
CTACGGCTGGTGTAGAGATTCTTGGAGCATTGCAAGCACAATTGGATAGG
CACAAGGATACCACTAACGAGACAGAGGCTACCCGGTTGGCAACCTATTG
CTACTACTATTCCATGATATCAACCCAAAAACGATTAATCTTAACACTTC
AATGTGCTCTTCTTCGCCGTAATGATATGGAGGCTATCTATCATGGGGTA
AAAAGTTACTTGGACAACGCCTTGCTAGAAGAAGATAAGAAAACTTTCAA
GTTTTTGATAGATTTACCAAACAACGGAAAATGGTGGCTTTTATACCGTT
ATATACACAGAGTTGGAAGCACCACAGCGTTCTATCATCTCAAACTTTCT
AAAAGTTATCGGATGTGAATGTCATCAGAGGAGGCAATGAACGCTGCATT
AAATGCACTTGCAGATTTACAAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035309XLOC_035309Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056107-proteinTCONS_00056107-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056107-exon-scaffold_267-1575043694:611763..611982TCONS_00056107-exon-scaffold_267-1575043694:611763..611982Clytia hemisphaericaexon
TCONS_00056107-exon-scaffold_267-1575043694:609992..611246TCONS_00056107-exon-scaffold_267-1575043694:609992..611246Clytia hemisphaericaexon
TCONS_00056107-exon-scaffold_267-1510915933:611763..611982TCONS_00056107-exon-scaffold_267-1510915933:611763..611982Clytia hemisphaericaexon
TCONS_00056107-exon-scaffold_267-1510915933:609992..611246TCONS_00056107-exon-scaffold_267-1510915933:609992..611246Clytia hemisphaericaexon
TCONS_00056107-exon-scaffold_267-1491911889:611763..611982TCONS_00056107-exon-scaffold_267-1491911889:611763..611982Clytia hemisphaericaexon
TCONS_00056107-exon-scaffold_267-1491911889:609992..611246TCONS_00056107-exon-scaffold_267-1491911889:609992..611246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:609992..611982 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0298632	0	0.0674591	0	0	0.0283916	0	3.98791	0.503237	8.86683	21.3146	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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