TCONS_00056130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056130
Unique NameTCONS_00056130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056130 ID=TCONS_00056130|Name=TCONS_00056130|organism=Clytia hemisphaerica|type=transcript|length=671bp
AGTTTaaggaaaaatgaaactttacaaatggtATGTACTtaaaaactttc
tttacaatgGTCTTAACAAATATAAACGAAGACAagaaaaaatgatcaaa
taggTATCACTTTTTGTGCAAGGAAGATATCAAACCATCgaaagtaataa
aaaagaaatcaagaaaagaaACCAATTAAAATTGTATAAACACAATGTTC
TCGTTTTTTGTTCGTTTTGCCAGTTAATCACCTATCTCTTCTGCTTTTTG
ACTTTGATGATGAGGAATTTGATGAACTGTGCCTGCTAGAACTCGTTGAT
GTCGATGaactttttgacaattttggaATTTGTGGATGTTCCTTTTGCAC
GAAAGGACAATATGTCGAATAATGGCCAACTTTTTTATAATTGTAACACA
TAACGTCATCAAAACGAGATGACCTGTTTGATTTTCTCTGttcaatttca
atgttttgtttgaattttcgGCAGATTTTCTAGCCTCTTTTACCTGCTTT
TCTTTCAATGCCCCACTTGAAACCAACAGATTTTGCTTATACAATTTCAC
CACCGTCCATCCTTCCCTGTCGGCAAGTCTTAACATTTAAATTCTATCTT
CTAAAAGAAGCTTACCTTGTTTTATGAACGTTAAAGCAGATTCATTTTCT
CCGGCTTCCAATGCTTCTATG
Run BLAST on NCBI

protein sequence of TCONS_00056130-protein

>TCONS_00056130-protein ID=TCONS_00056130-protein|Name=TCONS_00056130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MLRLADREGWTVVKLYKQNLLVSSGALKEKQVKEARKSAENSNKTLKLNR
ENQTGHLVLMTLCVTIIKKLAIIRHIVLSCKRNIHKFQNCQKVHRHQRVL
AGTVHQIPHHQSQKAEEIGD
Run BLAST on NCBI

transcript from alignment at scaffold_267:396984..397654

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056130 ID=TCONS_00056130|Name=TCONS_00056130|organism=Clytia hemisphaerica|type=transcript|length=671bp|location=Sequence derived from alignment at scaffold_267:396984..397654 (Clytia hemisphaerica)
CATAGAAGCATTGGAAGCCGGAGAAAATGAATCTGCTTTAACGTTCATAA
AACAAGGTAAGCTTCTTTTAGAAGATAGAATTTAAATGTTAAGACTTGCC
GACAGGGAAGGATGGACGGTGGTGAAATTGTATAAGCAAAATCTGTTGGT
TTCAAGTGGGGCATTGAAAGAAAAGCAGGTAAAAGAGGCTAGAAAATCTG
CcgaaaattcaaacaaaacattgaaattgaaCAGAGAAAATCAAACAGGT
CATCTCGTTTTGATGACGTTATGTGTTACAATTATAAAAAAGTTGGCCAT
TATTCGACATATTGTCCTTTCGTGCAAAAGGAACATCCACAAATtccaaa
attgtcaaaaagttCATCGACATCAACGAGTTCTAGCAGGCACAGTTCAT
CAAATTCCTCATCATCAAAGTCAAAAAGCAGAAGAGATAGGTGATTAACT
GGCAAAACGAACAAAAAACGAGAACATTGTGTTTATACAATTTTAATTGG
TttcttttcttgatttcttttttattactttcGATGGTTTGATATCTTCC
TTGCACAAAAAGTGATAcctatttgatcattttttctTGTCTTCGTTTAT
ATTTGTTAAGACcattgtaaagaaagtttttaAGTACATaccatttgtaa
agtttcatttttccttAAACT

Coding sequence (CDS) from alignment at scaffold_267:396984..397654

>TCONS_00056130 ID=TCONS_00056130|Name=TCONS_00056130|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at scaffold_267:396984..397654 (Clytia hemisphaerica)
ATGTTAAGACTTGCCGACAGGGAAGGATGGACGGTGGTGAAATTGTATAA
GCAAAATCTGTTGGTTTCAAGTGGGGCATTGAAAGAAAAGCAGGTAAAAG
AGGCTAGAAAATCTGCcgaaaattcaaacaaaacattgaaattgaaCAGA
GAAAATCAAACAGGTCATCTCGTTTTGATGACGTTATGTGTTACAATTAT
AAAAAAGTTGGCCATTATTCGACATATTGTCCTTTCGTGCAAAAGGAACA
TCCACAAATtccaaaattgtcaaaaagttCATCGACATCAACGAGTTCTA
GCAGGCACAGTTCATCAAATTCCTCATCATCAAAGTCAAAAAGCAGAAGA
GATAGGTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035332XLOC_035332Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056130-proteinTCONS_00056130-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056130-exon-scaffold_267-1491911889:396984..397654TCONS_00056130-exon-scaffold_267-1491911889:396984..397654Clytia hemisphaericaexon
TCONS_00056130-exon-scaffold_267-1510915933:396984..397654TCONS_00056130-exon-scaffold_267-1510915933:396984..397654Clytia hemisphaericaexon
TCONS_00056130-exon-scaffold_267-1575043694:396984..397654TCONS_00056130-exon-scaffold_267-1575043694:396984..397654Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:396984..397654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.53071	4.56792	3.04316	1.4461	0.310674	0	0.0987278	0.184856	0.129422	0.240464	0.0778002	0.153428	0.30643	0.212154	0.130815	0.187179	0.345883	0.354519	0	0	0.296986	0	0.440239	1.12068	0.247343	0.882992	0.105297	0.112375	0.340931	0.173677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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