|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056133 ID=TCONS_00056133|Name=TCONS_00056133|organism=Clytia hemisphaerica|type=transcript|length=941bp
TAATGAAGACACTTGAAAGAGACTTTGTACTTTCAATCTTCTGAACGATT
ACATGTTGACTAGTAGGAAATGGGGTAATCTTTACCACTGGGAATAAAAC
AACGTCCGGAACAATCTCCGATGCACATTGATGACGTATGGGTTTGACTA
GTTGAACATCACTGACTTGCACACCTGATACGCGACGAGGTATTGCTCTT
TTAAGAATCGCACGAGACAAATTTTGCACAGACTTTGCAACAACTTCGTT
GATACGAACAGCAGGGACTACTTCCAATGCATGCGTTTTGATACTTTTCA
AAGTGAGAACAATTTTTGCGACGCGAAGCCTCTGGGGTGCGGATTCAATA
ACTTCAATACCAGTTTTGACTACTTCACGAGACAAACAGAGCTCATGCTC
AAACTGTTCTTtagggaaaaatgaaaatgcattTCTATGCTTGGTTGACA
AACCTTCAAAGTCACGCAGCAAACCATTGAGTCTCTTTTTCTCGTAATCA
TACGTAGATCTGTCAATCTCAAGGTCGATACTCTCTCGACTTTTGTTTCC
ATAAGCACGCTTGAGAAATCTGGTTGACTCGAAAATATTATCCAGAAGCT
TGTTACGCCCTTCAGCGTATCCTTTGACGAGGTTGATAGCCATCATTTCA
CTGCCATGATCCATTGTTTGATTTTGTAACAATTAGTTCAAACAAAACAT
TTATGCAAGTTGCTGTTTGAATCCCAATGCTCAATCTGCCATTACGATAG
GGTGTACGTGAGTGTTTTTACTGTAAATGCCGTAGGCCAAACTCATGGAC
AGAGACATTTAGGTGAGTAGGTTTTCGATGCGTTCTTCTGAAGTAACGGC
TataaaataaacacaaatacAAAGTCAAGAAAAAGCTCATAGCAAATGAA
ATAACACAAGAAATGGTATAAATCTAAGCCTTGGTACAGAA Run BLAST on NCBI protein sequence of TCONS_00056133-protein >TCONS_00056133-protein ID=TCONS_00056133-protein|Name=TCONS_00056133-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
MDHGSEMMAINLVKGYAEGRNKLLDNIFESTRFLKRAYGNKSRESIDLEI
DRSTYDYEKKRLNGLLRDFEGLSTKHRNAFSFFPKEQFEHELCLSREVVK
TGIEVIESAPQRLRVAKIVLTLKSIKTHALEVVPAVRINEVVAKSVQNLS
RAILKRAIPRRVSGVQVSDVQLVKPIRHQCASEIVPDVVLFPVVKITPFP
TSQHVIVQKIESTKSLSSVFI Run BLAST on NCBI transcript from alignment at scaffold_267:435019..435959 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056133 ID=TCONS_00056133|Name=TCONS_00056133|organism=Clytia hemisphaerica|type=transcript|length=941bp|location=Sequence derived from alignment at scaffold_267:435019..435959 (Clytia hemisphaerica)
TTCTGTACCAAGGCTTAGATTTATACCATTTCTTGTGTTATTTCATTTGC
TATGAGCTTTTTCTTGACTTTgtatttgtgtttattttatAGCCGTTACT
TCAGAAGAACGCATCGAAAACCTACTCACCTAAATGTCTCTGTCCATGAG
TTTGGCCTACGGCATTTACAGTAAAAACACTCACGTACACCCTATCGTAA
TGGCAGATTGAGCATTGGGATTCAAACAGCAACTTGCATAAATGTTTTGT
TTGAACTAATTGTTACAAAATCAAACAATGGATCATGGCAGTGAAATGAT
GGCTATCAACCTCGTCAAAGGATACGCTGAAGGGCGTAACAAGCTTCTGG
ATAATATTTTCGAGTCAACCAGATTTCTCAAGCGTGCTTATGGAAACAAA
AGTCGAGAGAGTATCGACCTTGAGATTGACAGATCTACGTATGATTACGA
GAAAAAGAGACTCAATGGTTTGCTGCGTGACTTTGAAGGTTTGTCAACCA
AGCATAGAaatgcattttcatttttccctaAAGAACAGTTTGAGCATGAG
CTCTGTTTGTCTCGTGAAGTAGTCAAAACTGGTATTGAAGTTATTGAATC
CGCACCCCAGAGGCTTCGCGTCGCAAAAATTGTTCTCACTTTGAAAAGTA
TCAAAACGCATGCATTGGAAGTAGTCCCTGCTGTTCGTATCAACGAAGTT
GTTGCAAAGTCTGTGCAAAATTTGTCTCGTGCGATTCTTAAAAGAGCAAT
ACCTCGTCGCGTATCAGGTGTGCAAGTCAGTGATGTTCAACTAGTCAAAC
CCATACGTCATCAATGTGCATCGGAGATTGTTCCGGACGTTGTTTTATTC
CCAGTGGTAAAGATTACCCCATTTCCTACTAGTCAACATGTAATCGTTCA
GAAGATTGAAAGTACAAAGTCTCTTTCAAGTGTCTTCATTA Coding sequence (CDS) from alignment at scaffold_267:435019..435959 >TCONS_00056133 ID=TCONS_00056133|Name=TCONS_00056133|organism=Clytia hemisphaerica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_267:435019..435959 (Clytia hemisphaerica)
ATGGATCATGGCAGTGAAATGATGGCTATCAACCTCGTCAAAGGATACGC
TGAAGGGCGTAACAAGCTTCTGGATAATATTTTCGAGTCAACCAGATTTC
TCAAGCGTGCTTATGGAAACAAAAGTCGAGAGAGTATCGACCTTGAGATT
GACAGATCTACGTATGATTACGAGAAAAAGAGACTCAATGGTTTGCTGCG
TGACTTTGAAGGTTTGTCAACCAAGCATAGAaatgcattttcatttttcc
ctaAAGAACAGTTTGAGCATGAGCTCTGTTTGTCTCGTGAAGTAGTCAAA
ACTGGTATTGAAGTTATTGAATCCGCACCCCAGAGGCTTCGCGTCGCAAA
AATTGTTCTCACTTTGAAAAGTATCAAAACGCATGCATTGGAAGTAGTCC
CTGCTGTTCGTATCAACGAAGTTGTTGCAAAGTCTGTGCAAAATTTGTCT
CGTGCGATTCTTAAAAGAGCAATACCTCGTCGCGTATCAGGTGTGCAAGT
CAGTGATGTTCAACTAGTCAAACCCATACGTCATCAATGTGCATCGGAGA
TTGTTCCGGACGTTGTTTTATTCCCAGTGGTAAAGATTACCCCATTTCCT
ACTAGTCAACATGTAATCGTTCAGAAGATTGAAAGTACAAAGTCTCTTTC
AAGTGTCTTCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056133-exon-scaffold_267-1491911889:435019..435959 | TCONS_00056133-exon-scaffold_267-1491911889:435019..435959 | Clytia hemisphaerica | exon |
| TCONS_00056133-exon-scaffold_267-1510915933:435019..435959 | TCONS_00056133-exon-scaffold_267-1510915933:435019..435959 | Clytia hemisphaerica | exon |
| TCONS_00056133-exon-scaffold_267-1575043694:435019..435959 | TCONS_00056133-exon-scaffold_267-1575043694:435019..435959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_267 | supercontig | scaffold_267:435019..435959 . |
Blast
The following BLAST results are available for this feature:
|
