TCONS_00056134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056134
Unique NameTCONS_00056134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056134 ID=TCONS_00056134|Name=TCONS_00056134|organism=Clytia hemisphaerica|type=transcript|length=366bp
CGCTCTTTTCCAATCGACAAAGAGAAGAAGAAAGGTGCTGACGACGACGA
AGAAGCTGATGTTCAATATAACAAAAGGTTCCCGGAAGTGAGTCGCCGTG
GAAtaacatatttgtttttatggTTTTGCCCACTGCATGGACATTGCTTT
GGATATCATATGATACCCTCGTCAGAAGGACGCAAAGACCCTGCCGCATC
CCTAAACATGTTCAAGCCTAAGGCCCCTCATattattttgtatgattttg
cCTGCAGCTTTGATGAGTACGCACGGAACCGTGAGTCAGGGTACTTTTGC
TGCTCTAGATTTTTCCATGatatttttaatggtttttcgCACAAATGTGG
CTCGTGCTTCCGGTGT
Run BLAST on NCBI

protein sequence of TCONS_00056134-protein

>TCONS_00056134-protein ID=TCONS_00056134-protein|Name=TCONS_00056134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
RSFPIDKEKKKGADDDEEADVQYNKRFPEVSRRGITYLFLWFCPLHGHCF
GYHMIPSSEGRKDPAASLNMFKPKAPHIILYDFACSFDEYARNRESGYFC
CSRFFHDIFNGFSHKCGSCFRC
Run BLAST on NCBI

transcript from alignment at scaffold_267:485571..485936

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056134 ID=TCONS_00056134|Name=TCONS_00056134|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_267:485571..485936 (Clytia hemisphaerica)
ACACCGGAAGCACGAGCCACATTTGTGcgaaaaaccattaaaaatatCAT
GGAAAAATCTAGAGCAGCAAAAGTACCCTGACTCACGGTTCCGTGCGTAC
TCATCAAAGCTGCAGgcaaaatcatacaaaataatATGAGGGGCCTTAGG
CTTGAACATGTTTAGGGATGCGGCAGGGTCTTTGCGTCCTTCTGACGAGG
GTATCATATGATATCCAAAGCAATGTCCATGCAGTGGGCAAAAccataaa
aacaaatatgttaTTCCACGGCGACTCACTTCCGGGAACCTTTTGTTATA
TTGAACATCAGCTTCTTCGTCGTCGTCAGCACCTTTCTTCTTCTCTTTGT
CGATTGGAAAAGAGCG

Coding sequence (CDS) from alignment at scaffold_267:485571..485936

>TCONS_00056134 ID=TCONS_00056134|Name=TCONS_00056134|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_267:485571..485936 (Clytia hemisphaerica)
ACACCGGAAGCACGAGCCACATTTGTGcgaaaaaccattaaaaatatCAT
GGAAAAATCTAGAGCAGCAAAAGTACCCTGACTCACGGTTCCGTGCGTAC
TCATCAAAGCTGCAGgcaaaatcatacaaaataatATGAGGGGCCTTAGG
CTTGAACATGTTTAGGGATGCGGCAGGGTCTTTGCGTCCTTCTGACGAGG
GTATCATATGATATCCAAAGCAATGTCCATGCAGTGGGCAAAAccataaa
aacaaatatgttaTTCCACGGCGACTCACTTCCGGGAACCTTTTGTTATA
TTGAACATCAGCTTCTTCGTCGTCGTCAGCACCTTTCTTCTTCTCTTTGT
CGATTGGAAAAGAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035336XLOC_035336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056134-exon-scaffold_267-1491911889:485571..485936TCONS_00056134-exon-scaffold_267-1491911889:485571..485936Clytia hemisphaericaexon
TCONS_00056134-exon-scaffold_267-1510915933:485571..485936TCONS_00056134-exon-scaffold_267-1510915933:485571..485936Clytia hemisphaericaexon
TCONS_00056134-exon-scaffold_267-1575043694:485571..485936TCONS_00056134-exon-scaffold_267-1575043694:485571..485936Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056134-proteinTCONS_00056134-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_267supercontigscaffold_267:485571..485936 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.220359	0	0	0	0	0.581048	0	0	0	0	0.45149	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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