TCONS_00056147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056147
Unique NameTCONS_00056147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056147 ID=TCONS_00056147|Name=TCONS_00056147|organism=Clytia hemisphaerica|type=transcript|length=1599bp
CGTGACTGGCCGACACCTTATACCGTAGTATCTCTGGGTTATAATATCAC
GCGCTGTGCGTATATGTATTTTGATTTCCCAATAACTACTTCCCCTCGTC
CCGACTGACAATCAGTAGGTAGGTGTGCGCCACGCTGCAGACGAACGACA
GACTGCAACAGACGACGGTCGACAACGCAACGCAACGTCAAACAACGTGG
ATACACTTTCCTTCTGTTTTGTATTCACACTTGTAGCATTCATATCTCAT
CAGTTACTGCAACAATTTCAATCCACAAGGATGCCCTACAGAGAAGAGGA
TCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCGAAGAACTGTGGA
AGAATGATAAGAATCGTTTAACTCCTGATCAAGATTATGAATTGGATTTG
CAAGGACGTACTCGTTTCTCTTATGACGGACCAGACATGGCTGCTGATCC
TCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGACCAACAtataaag
CCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACTGGTGTAGCTGAA
GAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATTCATTAATGCATG
CTACAAGACCGACTGTATGCGACTTTGTTATCAATATCTGAAAttcaaaa
agataatcaataaaTCACCTGAAGAATTCAAACAAGAATTGTACGATATG
TGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGaaaattcgATTCATC
TGGTTTTGAACACGTGTTTGTCGGAGAGACCAGGGGCGATAAAGAAGTCA
TCGGATTCCACAACTGGATTCAATTCTACTTACAAGAGAAAGCTAAGAAT
GTTGATTACAAAGGATTCATGGCTAGTGACAGGAACCCTCACTTATTGAC
AGTCCAATTCTCATGGAAAGGCGAAGTCAAACCAAAAGGCGGTATCTTCA
TCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTACACAGTCTGCTATATG
TTAGGTGAGCACTCTTATAAGATCACATTGGGCGGAGAAGAGGTGATCAT
CAAGTGCCATCAGACTGCAGGTAAGATCGGTACTTGTTACCCACAGTTAC
CCCGATGGCAGGGAAGAAGAAAGTAAAAAGTCGTTCACGTGAACATTTCA
AAACGATCCTGAAAACGCTTGCGAAAGATTTTACAGTATGAATCCATGGT
ATTTTATTCATCGTTTTATATGTTTTTAGTCGCGCCTTTCAGGTAGTTCA
TTTCAATTAAAGTGTGTGGTGAGGGCTAGAGGGAATGCGAACATGAAGTG
GATTTTGATTAgaatttttcaattaattttagTGGCATAATTTTTGCCTT
ttagttgtttatttttttaacttttttatttttattttcgtattATGGCT
TTTTCGTACATGTCCACTTGCTTTTTTTAATCTCTTTTTGTAATACATCT
TTCTTTATTCTCaagattatttttcaatttatatttttgatgggagaaat
ttacaatttacacATTCATGAACTTTTCGTATccaatttgtattttatta
ttaGTCACGATggaataaatgaataaataaattttattttcaaaaataa
Run BLAST on NCBI

protein sequence of TCONS_00056147-protein

>TCONS_00056147-protein ID=TCONS_00056147-protein|Name=TCONS_00056147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MPYREEDPPFEDNGLNNWCEELWKNDKNRLTPDQDYELDLQGRTRFSYDG
PDMAADPLFASVSREALARPTYKAFVALLDNYETATGVAEEVTPKELREN
WEFINACYKTDCMRLCYQYLKFKKIINKSPEEFKQELYDMWFKMYRRSRE
TRKFDSSGFEHVFVGETRGDKEVIGFHNWIQFYLQEKAKNVDYKGFMASD
RNPHLLTVQFSWKGEVKPKGGIFIGVSPEFELALYTVCYMLGEHSYKITL
GGEEVIIKCHQTAGKIGTCYPQLPRWQGRRK
Run BLAST on NCBI

transcript from alignment at scaffold_268:94536..102210+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056147 ID=TCONS_00056147|Name=TCONS_00056147|organism=Clytia hemisphaerica|type=transcript|length=7675bp|location=Sequence derived from alignment at scaffold_268:94536..102210+ (Clytia hemisphaerica)
CGTGACTGGCCGACACCTTATACCGTAGTATCTCTGGGTTATAATATCAC GCGCTGTGCGTATATGTATTTTGATTTCCCAATAACTACTTCCCCTCGTC CCGACTGACAATCAGTAGGTAGGTGTGCGCCACGCTGCAGACGAACGACA GACTGCAACAGACGACGGTCGACAACGCAACGCAACGTCAAACAACGTGG ATACACTTTCCTTCTGTTTTGTATTCACACTTGTAGCATTCATATCTCAT CAGTTACTGCAACAATTTCAATCCACAAGGATGCCCTACAGAGAAGAGGA GTAAGTATTTATGCTTTAgacggtcatcgaaaaattgttctattcgcgtc acccgcccgcatcaaattttctgctgattttcgggacgaccctggacacc gccgtacattgtacggtgtTGTACGGTGGGTGTACGGTGGGGTGTACGGT GGATTTCGAGTTAACCTATTTCACCACCGTAccaaattgatttcagtttc AGAAAGCATGCAAATTTTTAGACATTCAACCGTGGTCGGACTTACTGAAA AACTTCTAAgtcggaaaaactttctttGGTACATTAAGTTTGACCACAGA ACTTGTCTTTCGCGATCGCATTCCCACCGTACTACCgtagttggtctaat gtcgacatccgtcttctaatttcgacacccttctttttagagataggaac aatagaaactgaggaaggtcggaatcactgattgactttgattagcgtga tgagaggaaaaaatctttagtctatcagtgatttcgaccttcttattatt ccaatctataaagaaggatgtcgaaattagaagacggatgtcgaaattag aagacggatgtcgacattagaccaacttacggtattgtACGGTGGGAAAT TTAATGTACGGTGGGAAAATGGACGGTGTTTTCAAAGTtgggtgcggaga tgcggagatgcggaaaaaaatctgggaaaagcaatttgttcttttaaagt atagcttttttctcaattgctttgacgaccatcgaaaaattgttttgcag GCGTTACCACCCGCCCAGCTGTGAGTTACTGgcggcgtgattaaaaaaag ctgggaatgtttttgaccgcccgtccgcccgcatgcatttttaacacccg ttgcgatgCGAACAGAGCATtatttcgatgaccgccttagAGTCCCCCCT CCCAGTTCGGGCGACCCGTCTAGTTTGCGAATATGAATGGGCCATTTCTA GAATTTGTCTGTGACAGGAGGGGGGCGAACGAcacaccaaaattcgaaat ttccaaggcctgagaagaaaatgtatgaattttaaggcaattgaactaaa aaaggcaaaaaagagtggaatttctgaTGTATTCTACAAAAATACATgaa tttttatcggaatttccaaccaccactgccagacggtgtcaatcgaacga atcgaacgtcGAATCAAAAATGTATACTTAATATCCTGACTGTCCCAGAC Gattcaaggctgagatatagaagaacgagtataggcgtttgcgcctgcgt ttggtgactgacagtttcagtttcagtttcactactttcactttcacttt cactttcagccagcgagtgagcgagcatgataattgatttccgggtcaaa atgtttgacacttgaaccaatcgtttgcttacctttcttgcgtggtcgtc atttgaatttcagtattcagtGCTTATGAAATACGGTTGTTATAAGGGTA TCAAACTCCTCACTAagagggaacagatcatagattcgaattgaacgcgt aattactaatcaggcacgacgcaacgggtacggcagggACGGCGGctgcc gtaccagattttcacaaaaatacctgaagttttcctcttcgtcggtaaaa tcgctataaaatcgcttaaatttcctcattcgccgtaccagatataaaaa gcttccgtcgtgcctgctaatagcaattaacaatacataacgcgtcgata tctcttcactcccatgaaatgtgattcaaaattaaagtgatgagcacgaa aacaaaatcaagaattggaaaatttgacacccagagggatcgaactcgga aacccatgcTTATGAGACAAACGCTCTAACCATTTGAGCTAACCACAATT GAAAGAGTctgagggaaagcttgaagttatgagaaagaaaaaggaaagaa agaaacaagaagaaaattagttcccgctttgatgttattatcgaaacaaa aggatcagtcacgccgacattcctttccacacgtcagcaatctagttttt ataaatataacaactagattgtaaggttcattctaaaaaagaatagtcgt TTCTTTAGACCAGCTACGTTCTATGCTAAAGTGTTAAAGTGTTCCGGTTT TTACCAAAAGAAAGCCAGTGATCTTATTTATAGCTTTTTAGCAGTGTATA ACACTGTGGACGCCCAcgcgggctagacggcaaattgatAAAGTGCcaaa cgttttgcaacatttcaaaatttgtttgcCGCGGGAGAAAACAAAGTTGC GACTATTGATGGACAAATGTTTCTGGAAAAGGAGGATAACtagttgaagg ctgaaactttgtttACTTAACTTTTGGTTACTTTTGATTGTCTTCGAGCA TATAGTTCTGGCAAGAATCTTTTGATCCACACCACAATCTTTGTTAAATC CACAACTCTTGAAGGAAAAATGGAACANGTCTTCGAGCATATAGTTCTGG CAAGAATCTTTTGATCCACACCACAATCTTTGTTAAATCCACAattcttg aaggaaaaatgGAACAGCAGAGAGGGCACCCTGTATAACCACGGATTTGG TAGTGAGGTCACctagcacataaaaacgtaagaatacttcagatggtgat taagcataaaatttggcacagatgatccttagagggtctaaaacttaatt ttaaacagtaacaccaaattttgccacatggcaacctgccagatgacgtc atcaggttggctgggcaaaaaattatttttttgaaaatatttaaaatctg atggttccagcaGAAAGAGcatgctgataaaaattgaggtataaaacatg ccttgaaaatcttcctatcaaaagttatggaggttgaaagNcatgaaatg ctgataaaaattgaggtataaaacatgccttgaaaatcttcctatcaaaa gttatggaggttgaaagttttttgatgacgtcatcataagcttttccagg caaaacttaaaaacctcgtaattttggtacaaattgaccaaatttcatgt tttatacatgaattcatatcTGCTGTTAcgtaatttcaaattatttggaC CAATCTACTTGTTAACACACATTTGTCCTAGACGCGAGTGGTCTTTTGCT TTGAAGCTATCATTGATGTTTGGTACTAGAACTTTTGTTTCTAGAATTTT CCAAGTATATATCGTTCTCTCCTTTTCTGCAGTGAGTATATCTTAAGCTG CATGAGACTTTCCCAGTAATTTTGAGGTGTTcctcttataaaattatcag aaaaagggtgaggaattaaaaaatcacattcgctaattctagttctttca ttatCATGTAGTTTGTTTCACTTTTTCGATTCTTTACCATGGGAttgtct caaaaaaaaatttatttctgccgaaatggattttcttttcatttgggatt cttctttcagaaaaacttattctttacttataactttttgttcctctatt tccagaggccccttgaaaatgggtcctaccacctttttgaCTCATTTGCA AAAAGTTGGTACTATAGTTAGACAAAAATTGTGTCTATCCGACTGACACG TCAACAtagtttaaaaaaactttaattaaGATAACAATCTTGTCTGTCTc accatgaaggtaataaagatatagatggagagaaaacgtctcggtaatga cctaaatggtggttgaaatcttttataaatctattcaaagcggcttttct ttgatgtaccatcattggaagcaaaaaacattaatttataactttataag aacagaaagaggctggtccgtttattttgaaaaacttaattttgcgagaa atcttggttaaaatgcgattcgaaatagtttcaactgatttaaggataaa agaatatattgatttcataaggatatatttttgggcgggcattttgtgaa aattggtagtcgcatcacattatcattgaaagtttcttatcttaaaatct tcacgtctaagtgggcagcggttttcatatgggcattatgggcagcttcc cctagcagtttggagtattgtgcttattatgtgaagtttttttacaattt ttcatgacaaggctattattttccaatatacttgttaaaaatgtaatgtc ttttcattcatcttaaacaTTCCCgtgagtatacccaaaattaatcatct tattcccaaagcaaccaaacagctgtttgcttccgatgataaatcagaat agaacaaaggGCATTGATTCACCATCTGtatttattaccttcatggtctC ACATTTCTTGTATCAGGAAATTGGATAAACTATTCAAAAACTTGTCTCAT TTAGTCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCGAAGAACTG TGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGATTATGAATTGGA TTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAGACATGGCTGCTG ATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGACCAACAtat aaaggtttgttttttgaTCAATTGAATATACAGATGCTATATGAAAGTGA ACCATGATTTTTCGTCTGTCCCTTGAGCACCTTGAGCAAAGAGAATTGAA ATATGTACACTATAGTTTAGCGAATTTATTCTTATTAAGACacacgtttt cttttataagaacatggggcttcaatggccaaaatgttaagaacaagtta agaatattttaaggctttgtgtaCTCAAAAACAAccgttttcttaggaaa atgggtgaAAATGGTCTCAAAAagcttgaaacccaaaaagttaagaacat cccttcaaggcttcaaaattttggatgttctcattaaaaaaaacgtgtaa agttATCAACTATGACAATCAAGAAGACAAGACATACAAGATCGTTTTTT AGGGTATTCATTGTCTcatttttgttaactttttatcaattttcatacAG CCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACTGGTGTAGCTGAA GAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATTCATTAATGCATG CTACAAGACCGACTGTATGCGACTTTGTTATCAATATCTGAAAttcaaaa agataatcaataaaTCACCTGAAGAATTCAAACAAGAATTGTACGATATG TGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGGTTTGTCTGCCCTCT TTTTAAATGGTCATTAATCAAAGTAGCCTTGAAATTTAATCACATTGAAC TCGGTCACAAAGCAAACAGTTTtcaatgaaagttgaaattaTGGTGTGAA GAATAGAAGGTGACTTGTAATGTTAATTAAGAATTCAATCTAAAGTCTGT CAAAgcgaagaattgaaaaatatctgaaatattCATGCTTGATCTTTCTA AATGGAGGGTGCATATTTCTATAGATTCATAAAATATGCGTTTGATTGTA TTTCATTCAGCATGTTTAATTATCCCTTTCAACTTAATTTACTAACCAAA ACCattttttcttagaaaattcgATTCATCTGGTTTTGAACACGTGTTTG TCGGAGAGACCAGGGGCGATAAAGAAGTCATCGGATTCCACAACTGGATT CAATTCTACTTACAAGAGAAAGCTAAGAATGTTGATTACAAAGGATTCAT GGCTAGTGACAGGGTTGgtaacattttctttttctttaaaggaATAATGA GATGGTCTGAGATTTTAAGGGTACCACTGGTCTTATACATGAGAAAACGT GATTCCCGAGTAGTTTTGTCAACTGACAAGTCTGTGTCAAGATATTCCAc tttaaaatttcgaattcTGAGCTCTTTCCAACGTGAGAGGTCCGCGAGAG GTcccactgtttttttttaagttccTGAAAAGTCCGTCTGACTTGTCGAA GGTGAGTTATATCTCAGGGGGTCTTGTAGAATTATCTCAACGATAATCGA CGATTTATATTGTACATTCTTGACTCAAAATAGGAATTTTCATGGTTTTA TGCTCACATcataaaagtgtaaaaaagtataaaagtgTTACCCATTAAGA TAAATAATTTACAAATGCTTTGCAGGACTTTACACTCTAAACCCCCTGAC CGAAAGGTTTTCTTCGGAACCGTTTAAACGGCGATAATACTAAAAAATCG CTCCTCAACGATCTGCATAAACAAATGAACGAATGTGAAAGCAAATGCCT CTCGGAATTTTGTGAGTTTGTAAGCCAACTCGGTTTACAATAACAAACTG GAAAGCGCGATGCGAGATCCATAAAAAGACATGGCGACtgctttttgaaa tctttttttttaaccaaGAATTTGAGTTGGAGATTAAGAAACATTATTAA AGTTTTGGGTAAGGAAAAATGCAGTCTGTTTTTCCTTTTAGTTTCAGTAG TGAAATATCTCAATCTTGGCAACCAACTGATTATCCATTTAAGAATTAAA AGTCATTATTATCGTCAATAATTGGGCTTTCTTTTCCGTGTTTTTCCAAG TATAAATTCTTCAATCATCATTAATACCATTTATTGAGCGTAAAACTCGA TCTTAGGAAGTCGAAATCTGTAATATAtaaactatttaaaaaaatcaaga tttattCCATCATTTCTTATCAACTTGCCGTAAATCtatctttctttttc attcaacagAACCCTCACTTATTGACAGTCCAATTCTCATGGAAAGGCGA AGTCAAACCAAAAGGCGGTATCTTCATCGGTGTCTCACCTGAATTTGAGC TAGCTCTTTACACAGTCTGCTATATGTTAGGTGAGCACTCTTATAAGATC ACATTGGGCGGAGAAGAGGTGATCATCAAGTGCCATCAGACTGCAGGTAA GATCGGTACTTGTTACCCACAGTTACCCCGATGGCAGGGAAGAAGAAAGT AAAAAGTCGTTCACGTGAACATTTCAAAACGATCCTGAAAACGCTTGCGA AAGATTTTACAGTATGAATCCATGGTATTTTATTCATCGTTTTATATGTT TTTAGTCGCGCCTTTCAGGTAGTTCATTTCAATTAAAGTGTGTGGTGAGG GCTAGAGGGAATGCGAACATGAAGTGGATTTTGATTAgaatttttcaatt aattttagTGGCATAATTTTTGCCTTttagttgtttatttttttaacttt tttatttttattttcgtattATGGCTTTTTCGTACATGTCCACTTGCTTT TTTTAATCTCTTTTTGTAATACATCTTTCTTTATTCTCaagattattttt caatttatatttttgatgggagaaatttacaatttacacATTCATGAACT TTTCGTATccaatttgtattttattattaGTCACGATggaataaatgaat aaataaattttattttcaaaaataa

Coding sequence (CDS) from alignment at scaffold_268:94536..102210+

>TCONS_00056147 ID=TCONS_00056147|Name=TCONS_00056147|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at scaffold_268:94536..102210+ (Clytia hemisphaerica)
ATGCCCTACAGAGAAGAGGATCCACCTTTTGAGGATAATGGTTTGAACAA
CTGGTGCGAAGAACTGTGGAAGAATGATAAGAATCGTTTAACTCCTGATC
AAGATTATGAATTGGATTTGCAAGGACGTACTCGTTTCTCTTATGACGGA
CCAGACATGGCTGCTGATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCT
TGCGAGACCAACAtataaagCCTTTGTTGCTCTCTTGGACAACTACGAAA
CAGCCACTGGTGTAGCTGAAGAGGTCACCCCAAAAGAACTACGTGAGAAT
TGGGAATTCATTAATGCATGCTACAAGACCGACTGTATGCGACTTTGTTA
TCAATATCTGAAAttcaaaaagataatcaataaaTCACCTGAAGAATTCA
AACAAGAATTGTACGATATGTGGTTCAAAATGTACAGGCGATCGAGGGAA
ACTAGaaaattcgATTCATCTGGTTTTGAACACGTGTTTGTCGGAGAGAC
CAGGGGCGATAAAGAAGTCATCGGATTCCACAACTGGATTCAATTCTACT
TACAAGAGAAAGCTAAGAATGTTGATTACAAAGGATTCATGGCTAGTGAC
AGGAACCCTCACTTATTGACAGTCCAATTCTCATGGAAAGGCGAAGTCAA
ACCAAAAGGCGGTATCTTCATCGGTGTCTCACCTGAATTTGAGCTAGCTC
TTTACACAGTCTGCTATATGTTAGGTGAGCACTCTTATAAGATCACATTG
GGCGGAGAAGAGGTGATCATCAAGTGCCATCAGACTGCAGGTAAGATCGG
TACTTGTTACCCACAGTTACCCCGATGGCAGGGAAGAAGAAAGTAAATGC
CCTACAGAGAAGAGGATCCACCTTTTGAGGATAATGGTTTGAACAACTGG
TGCGAAGAACTGTGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGA
TTATGAATTGGATTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAG
ACATGGCTGCTGATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCG
AGACCAACAtataaagCCTTTGTTGCTCTCTTGGACAACTACGAAACAGC
CACTGGTGTAGCTGAAGAGGTCACCCCAAAAGAACTACGTGAGAATTGGG
AATTCATTAATGCATGCTACAAGACCGACTGTATGCGACTTTGTTATCAA
TATCTGAAAttcaaaaagataatcaataaaTCACCTGAAGAATTCAAACA
AGAATTGTACGATATGTGGTTCAAAATGTACAGGCGATCGAGGGAAACTA
GaaaattcgATTCATCTGGTTTTGAACACGTGTTTGTCGGAGAGACCAGG
GGCGATAAAGAAGTCATCGGATTCCACAACTGGATTCAATTCTACTTACA
AGAGAAAGCTAAGAATGTTGATTACAAAGGATTCATGGCTAGTGACAGGA
ACCCTCACTTATTGACAGTCCAATTCTCATGGAAAGGCGAAGTCAAACCA
AAAGGCGGTATCTTCATCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTA
CACAGTCTGCTATATGTTAGGTGAGCACTCTTATAAGATCACATTGGGCG
GAGAAGAGGTGATCATCAAGTGCCATCAGACTGCAGGTAAGATCGGTACT
TGTTACCCACAGTTACCCCGATGGCAGGGAAGAAGAAAGTAAATGCCCTA
CAGAGAAGAGGATCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCG
AAGAACTGTGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGATTAT
GAATTGGATTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAGACAT
GGCTGCTGATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGAC
CAACAtataaagCCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACT
GGTGTAGCTGAAGAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATT
CATTAATGCATGCTACAAGACCGACTGTATGCGACTTTGTTATCAATATC
TGAAAttcaaaaagataatcaataaaTCACCTGAAGAATTCAAACAAGAA
TTGTACGATATGTGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGaaa
attcgATTCATCTGGTTTTGAACACGTGTTTGTCGGAGAGACCAGGGGCG
ATAAAGAAGTCATCGGATTCCACAACTGGATTCAATTCTACTTACAAGAG
AAAGCTAAGAATGTTGATTACAAAGGATTCATGGCTAGTGACAGGAACCC
TCACTTATTGACAGTCCAATTCTCATGGAAAGGCGAAGTCAAACCAAAAG
GCGGTATCTTCATCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTACACA
GTCTGCTATATGTTAGGTGAGCACTCTTATAAGATCACATTGGGCGGAGA
AGAGGTGATCATCAAGTGCCATCAGACTGCAGGTAAGATCGGTACTTGTT
ACCCACAGTTACCCCGATGGCAGGGAAGAAGAAAGTAAATGCCCTACAGA
GAAGAGGATCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCGAAGA
ACTGTGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGATTATGAAT
TGGATTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAGACATGGCT
GCTGATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGACCAAC
AtataaagCCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACTGGTG
TAGCTGAAGAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATTCATT
AATGCATGCTACAAGACCGACTGTATGCGACTTTGTTATCAATATCTGAA
AttcaaaaagataatcaataaaTCACCTGAAGAATTCAAACAAGAATTGT
ACGATATGTGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGaaaattc
gATTCATCTGGTTTTGAACACGTGTTTGTCGGAGAGACCAGGGGCGATAA
AGAAGTCATCGGATTCCACAACTGGATTCAATTCTACTTACAAGAGAAAG
CTAAGAATGTTGATTACAAAGGATTCATGGCTAGTGACAGGAACCCTCAC
TTATTGACAGTCCAATTCTCATGGAAAGGCGAAGTCAAACCAAAAGGCGG
TATCTTCATCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTACACAGTCT
GCTATATGTTAGGTGAGCACTCTTATAAGATCACATTGGGCGGAGAAGAG
GTGATCATCAAGTGCCATCAGACTGCAGGTAAGATCGGTACTTGTTACCC
ACAGTTACCCCGATGGCAGGGAAGAAGAAAGTAAATGCCCTACAGAGAAG
AGGATCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCGAAGAACTG
TGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGATTATGAATTGGA
TTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAGACATGGCTGCTG
ATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGACCAACAtat
aaagCCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACTGGTGTAGC
TGAAGAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATTCATTAATG
CATGCTACAAGACCGACTGTATGCGACTTTGTTATCAATATCTGAAAttc
aaaaagataatcaataaaTCACCTGAAGAATTCAAACAAGAATTGTACGA
TATGTGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGaaaattcgATT
CATCTGGTTTTGAACACGTGTTTGTCGGAGAGACCAGGGGCGATAAAGAA
GTCATCGGATTCCACAACTGGATTCAATTCTACTTACAAGAGAAAGCTAA
GAATGTTGATTACAAAGGATTCATGGCTAGTGACAGGAACCCTCACTTAT
TGACAGTCCAATTCTCATGGAAAGGCGAAGTCAAACCAAAAGGCGGTATC
TTCATCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTACACAGTCTGCTA
TATGTTAGGTGAGCACTCTTATAAGATCACATTGGGCGGAGAAGAGGTGA
TCATCAAGTGCCATCAGACTGCAGGTAAGATCGGTACTTGTTACCCACAG
TTACCCCGATGGCAGGGAAGAAGAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035349XLOC_035349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056147-exon-scaffold_268-1491911889:94536..94835TCONS_00056147-exon-scaffold_268-1491911889:94536..94835Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1510915933:94536..94835TCONS_00056147-exon-scaffold_268-1510915933:94536..94835Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1575043694:94536..94835TCONS_00056147-exon-scaffold_268-1575043694:94536..94835Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1491911889:99140..99339TCONS_00056147-exon-scaffold_268-1491911889:99140..99339Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1510915933:99140..99339TCONS_00056147-exon-scaffold_268-1510915933:99140..99339Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1575043694:99140..99339TCONS_00056147-exon-scaffold_268-1575043694:99140..99339Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1491911889:99786..100020TCONS_00056147-exon-scaffold_268-1491911889:99786..100020Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1510915933:99786..100020TCONS_00056147-exon-scaffold_268-1510915933:99786..100020Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1575043694:99786..100020TCONS_00056147-exon-scaffold_268-1575043694:99786..100020Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1491911889:100351..100498TCONS_00056147-exon-scaffold_268-1491911889:100351..100498Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1510915933:100351..100498TCONS_00056147-exon-scaffold_268-1510915933:100351..100498Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1575043694:100351..100498TCONS_00056147-exon-scaffold_268-1575043694:100351..100498Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1491911889:101495..102210TCONS_00056147-exon-scaffold_268-1491911889:101495..102210Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1510915933:101495..102210TCONS_00056147-exon-scaffold_268-1510915933:101495..102210Clytia hemisphaericaexon
TCONS_00056147-exon-scaffold_268-1575043694:101495..102210TCONS_00056147-exon-scaffold_268-1575043694:101495..102210Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056147-proteinTCONS_00056147-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:94536..102210 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
90.3023 95.4512 283.876 332.041 349.431 285.21 344.717 346.313 262.465 315.114 193.812 225.826 162.144 167.19 248.398 273.988 220.728 190.929 115.827 135.4 97.9948 96.9932 139.827 131.753 46.1201 51.0906 151.611 104.806 158.757 125.871
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018998Endoribonuclease_XendoU
Vocabulary: Molecular Function
TermDefinition
GO:0016788hydrolase activity, acting on ester bonds
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016788 hydrolase activity, acting on ester bonds
Blast
BLAST of TCONS_00056147 vs. Swiss-Prot (Human)
Match: ENDOU (Poly(U)-specific endoribonuclease OS=Homo sapiens GN=ENDOU PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.367e-41
Identity = 95/245 (38.78%), Postives = 138/245 (56.33%), Query Frame = 2
Query:  338 EELWKNDKNRLTPDQDYELDLQGRTRFS--YDGPDMAADPLFASVSREALARPTYKAFVALLDNYETATGVAEEVTPKELRENWEFINACYKTDCMRLCYQYLKFKKIINKSPEEFKQELYDMWFKMYRRSRETRKFDSSGFEHVFVGETRGDKEVIGFHNWIQFYLQEKAKNVDYKGFMAS---DRNPHLLTVQFSWKGEVKPKGGIFIGVSPEFELALYTVCYMLGEHSY-KITLGGEEVIIK 1054
            E++++ D N+    +D  L+ Q     S   +  D    PLF  V+ +  ++PTY AF+ LL+NY+ ATG  E  + +EL E   F+    KT  M+  Y +L  +     S +EF  +L +MWF +Y R  E  + DSSGFEHVF GE +  K V GFHNWI+FYL+EK   VDY   +     D  P +L +QF+W G  K  G  FIG SPEFE ALY++C++       +++LGG  + ++
Sbjct:  146 EKIYRADTNK-AQKEDIVLNSQNCISPSETRNQVDRCPKPLFTYVNEKLFSKPTYAAFINLLNNYQRATGHGEHFSAQELAEQDAFLREIMKTAVMKELYSFLHHQNRYG-SEQEFVDDLKNMWFGLYSRGNE--EGDSSGFEHVFSGEVKKGK-VTGFHNWIRFYLEEKEGLVDYYSHIYDGPWDSYPDVLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLCFIARPGKVCQLSLGGYPLAVR 385          
The following BLAST results are available for this feature:
BLAST of TCONS_00056147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ENDOU1.367e-4138.78Poly(U)-specific endoribonuclease OS=Homo sapiens ... [more]
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