|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056147 ID=TCONS_00056147|Name=TCONS_00056147|organism=Clytia hemisphaerica|type=transcript|length=1599bp CGTGACTGGCCGACACCTTATACCGTAGTATCTCTGGGTTATAATATCAC GCGCTGTGCGTATATGTATTTTGATTTCCCAATAACTACTTCCCCTCGTC CCGACTGACAATCAGTAGGTAGGTGTGCGCCACGCTGCAGACGAACGACA GACTGCAACAGACGACGGTCGACAACGCAACGCAACGTCAAACAACGTGG ATACACTTTCCTTCTGTTTTGTATTCACACTTGTAGCATTCATATCTCAT CAGTTACTGCAACAATTTCAATCCACAAGGATGCCCTACAGAGAAGAGGA TCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCGAAGAACTGTGGA AGAATGATAAGAATCGTTTAACTCCTGATCAAGATTATGAATTGGATTTG CAAGGACGTACTCGTTTCTCTTATGACGGACCAGACATGGCTGCTGATCC TCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGACCAACAtataaag CCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACTGGTGTAGCTGAA GAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATTCATTAATGCATG CTACAAGACCGACTGTATGCGACTTTGTTATCAATATCTGAAAttcaaaa agataatcaataaaTCACCTGAAGAATTCAAACAAGAATTGTACGATATG TGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGaaaattcgATTCATC TGGTTTTGAACACGTGTTTGTCGGAGAGACCAGGGGCGATAAAGAAGTCA TCGGATTCCACAACTGGATTCAATTCTACTTACAAGAGAAAGCTAAGAAT GTTGATTACAAAGGATTCATGGCTAGTGACAGGAACCCTCACTTATTGAC AGTCCAATTCTCATGGAAAGGCGAAGTCAAACCAAAAGGCGGTATCTTCA TCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTACACAGTCTGCTATATG TTAGGTGAGCACTCTTATAAGATCACATTGGGCGGAGAAGAGGTGATCAT CAAGTGCCATCAGACTGCAGGTAAGATCGGTACTTGTTACCCACAGTTAC CCCGATGGCAGGGAAGAAGAAAGTAAAAAGTCGTTCACGTGAACATTTCA AAACGATCCTGAAAACGCTTGCGAAAGATTTTACAGTATGAATCCATGGT ATTTTATTCATCGTTTTATATGTTTTTAGTCGCGCCTTTCAGGTAGTTCA TTTCAATTAAAGTGTGTGGTGAGGGCTAGAGGGAATGCGAACATGAAGTG GATTTTGATTAgaatttttcaattaattttagTGGCATAATTTTTGCCTT ttagttgtttatttttttaacttttttatttttattttcgtattATGGCT TTTTCGTACATGTCCACTTGCTTTTTTTAATCTCTTTTTGTAATACATCT TTCTTTATTCTCaagattatttttcaatttatatttttgatgggagaaat ttacaatttacacATTCATGAACTTTTCGTATccaatttgtattttatta ttaGTCACGATggaataaatgaataaataaattttattttcaaaaataa Run BLAST on NCBI protein sequence of TCONS_00056147-protein >TCONS_00056147-protein ID=TCONS_00056147-protein|Name=TCONS_00056147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MPYREEDPPFEDNGLNNWCEELWKNDKNRLTPDQDYELDLQGRTRFSYDG PDMAADPLFASVSREALARPTYKAFVALLDNYETATGVAEEVTPKELREN WEFINACYKTDCMRLCYQYLKFKKIINKSPEEFKQELYDMWFKMYRRSRE TRKFDSSGFEHVFVGETRGDKEVIGFHNWIQFYLQEKAKNVDYKGFMASD RNPHLLTVQFSWKGEVKPKGGIFIGVSPEFELALYTVCYMLGEHSYKITL GGEEVIIKCHQTAGKIGTCYPQLPRWQGRRK Run BLAST on NCBI transcript from alignment at scaffold_268:94536..102210+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056147 ID=TCONS_00056147|Name=TCONS_00056147|organism=Clytia hemisphaerica|type=transcript|length=7675bp|location=Sequence derived from alignment at scaffold_268:94536..102210+ (Clytia hemisphaerica) CGTGACTGGCCGACACCTTATACCGTAGTATCTCTGGGTTATAATATCAC
GCGCTGTGCGTATATGTATTTTGATTTCCCAATAACTACTTCCCCTCGTC
CCGACTGACAATCAGTAGGTAGGTGTGCGCCACGCTGCAGACGAACGACA
GACTGCAACAGACGACGGTCGACAACGCAACGCAACGTCAAACAACGTGG
ATACACTTTCCTTCTGTTTTGTATTCACACTTGTAGCATTCATATCTCAT
CAGTTACTGCAACAATTTCAATCCACAAGGATGCCCTACAGAGAAGAGGA
GTAAGTATTTATGCTTTAgacggtcatcgaaaaattgttctattcgcgtc
acccgcccgcatcaaattttctgctgattttcgggacgaccctggacacc
gccgtacattgtacggtgtTGTACGGTGGGTGTACGGTGGGGTGTACGGT
GGATTTCGAGTTAACCTATTTCACCACCGTAccaaattgatttcagtttc
AGAAAGCATGCAAATTTTTAGACATTCAACCGTGGTCGGACTTACTGAAA
AACTTCTAAgtcggaaaaactttctttGGTACATTAAGTTTGACCACAGA
ACTTGTCTTTCGCGATCGCATTCCCACCGTACTACCgtagttggtctaat
gtcgacatccgtcttctaatttcgacacccttctttttagagataggaac
aatagaaactgaggaaggtcggaatcactgattgactttgattagcgtga
tgagaggaaaaaatctttagtctatcagtgatttcgaccttcttattatt
ccaatctataaagaaggatgtcgaaattagaagacggatgtcgaaattag
aagacggatgtcgacattagaccaacttacggtattgtACGGTGGGAAAT
TTAATGTACGGTGGGAAAATGGACGGTGTTTTCAAAGTtgggtgcggaga
tgcggagatgcggaaaaaaatctgggaaaagcaatttgttcttttaaagt
atagcttttttctcaattgctttgacgaccatcgaaaaattgttttgcag
GCGTTACCACCCGCCCAGCTGTGAGTTACTGgcggcgtgattaaaaaaag
ctgggaatgtttttgaccgcccgtccgcccgcatgcatttttaacacccg
ttgcgatgCGAACAGAGCATtatttcgatgaccgccttagAGTCCCCCCT
CCCAGTTCGGGCGACCCGTCTAGTTTGCGAATATGAATGGGCCATTTCTA
GAATTTGTCTGTGACAGGAGGGGGGCGAACGAcacaccaaaattcgaaat
ttccaaggcctgagaagaaaatgtatgaattttaaggcaattgaactaaa
aaaggcaaaaaagagtggaatttctgaTGTATTCTACAAAAATACATgaa
tttttatcggaatttccaaccaccactgccagacggtgtcaatcgaacga
atcgaacgtcGAATCAAAAATGTATACTTAATATCCTGACTGTCCCAGAC
Gattcaaggctgagatatagaagaacgagtataggcgtttgcgcctgcgt
ttggtgactgacagtttcagtttcagtttcactactttcactttcacttt
cactttcagccagcgagtgagcgagcatgataattgatttccgggtcaaa
atgtttgacacttgaaccaatcgtttgcttacctttcttgcgtggtcgtc
atttgaatttcagtattcagtGCTTATGAAATACGGTTGTTATAAGGGTA
TCAAACTCCTCACTAagagggaacagatcatagattcgaattgaacgcgt
aattactaatcaggcacgacgcaacgggtacggcagggACGGCGGctgcc
gtaccagattttcacaaaaatacctgaagttttcctcttcgtcggtaaaa
tcgctataaaatcgcttaaatttcctcattcgccgtaccagatataaaaa
gcttccgtcgtgcctgctaatagcaattaacaatacataacgcgtcgata
tctcttcactcccatgaaatgtgattcaaaattaaagtgatgagcacgaa
aacaaaatcaagaattggaaaatttgacacccagagggatcgaactcgga
aacccatgcTTATGAGACAAACGCTCTAACCATTTGAGCTAACCACAATT
GAAAGAGTctgagggaaagcttgaagttatgagaaagaaaaaggaaagaa
agaaacaagaagaaaattagttcccgctttgatgttattatcgaaacaaa
aggatcagtcacgccgacattcctttccacacgtcagcaatctagttttt
ataaatataacaactagattgtaaggttcattctaaaaaagaatagtcgt
TTCTTTAGACCAGCTACGTTCTATGCTAAAGTGTTAAAGTGTTCCGGTTT
TTACCAAAAGAAAGCCAGTGATCTTATTTATAGCTTTTTAGCAGTGTATA
ACACTGTGGACGCCCAcgcgggctagacggcaaattgatAAAGTGCcaaa
cgttttgcaacatttcaaaatttgtttgcCGCGGGAGAAAACAAAGTTGC
GACTATTGATGGACAAATGTTTCTGGAAAAGGAGGATAACtagttgaagg
ctgaaactttgtttACTTAACTTTTGGTTACTTTTGATTGTCTTCGAGCA
TATAGTTCTGGCAAGAATCTTTTGATCCACACCACAATCTTTGTTAAATC
CACAACTCTTGAAGGAAAAATGGAACANGTCTTCGAGCATATAGTTCTGG
CAAGAATCTTTTGATCCACACCACAATCTTTGTTAAATCCACAattcttg
aaggaaaaatgGAACAGCAGAGAGGGCACCCTGTATAACCACGGATTTGG
TAGTGAGGTCACctagcacataaaaacgtaagaatacttcagatggtgat
taagcataaaatttggcacagatgatccttagagggtctaaaacttaatt
ttaaacagtaacaccaaattttgccacatggcaacctgccagatgacgtc
atcaggttggctgggcaaaaaattatttttttgaaaatatttaaaatctg
atggttccagcaGAAAGAGcatgctgataaaaattgaggtataaaacatg
ccttgaaaatcttcctatcaaaagttatggaggttgaaagNcatgaaatg
ctgataaaaattgaggtataaaacatgccttgaaaatcttcctatcaaaa
gttatggaggttgaaagttttttgatgacgtcatcataagcttttccagg
caaaacttaaaaacctcgtaattttggtacaaattgaccaaatttcatgt
tttatacatgaattcatatcTGCTGTTAcgtaatttcaaattatttggaC
CAATCTACTTGTTAACACACATTTGTCCTAGACGCGAGTGGTCTTTTGCT
TTGAAGCTATCATTGATGTTTGGTACTAGAACTTTTGTTTCTAGAATTTT
CCAAGTATATATCGTTCTCTCCTTTTCTGCAGTGAGTATATCTTAAGCTG
CATGAGACTTTCCCAGTAATTTTGAGGTGTTcctcttataaaattatcag
aaaaagggtgaggaattaaaaaatcacattcgctaattctagttctttca
ttatCATGTAGTTTGTTTCACTTTTTCGATTCTTTACCATGGGAttgtct
caaaaaaaaatttatttctgccgaaatggattttcttttcatttgggatt
cttctttcagaaaaacttattctttacttataactttttgttcctctatt
tccagaggccccttgaaaatgggtcctaccacctttttgaCTCATTTGCA
AAAAGTTGGTACTATAGTTAGACAAAAATTGTGTCTATCCGACTGACACG
TCAACAtagtttaaaaaaactttaattaaGATAACAATCTTGTCTGTCTc
accatgaaggtaataaagatatagatggagagaaaacgtctcggtaatga
cctaaatggtggttgaaatcttttataaatctattcaaagcggcttttct
ttgatgtaccatcattggaagcaaaaaacattaatttataactttataag
aacagaaagaggctggtccgtttattttgaaaaacttaattttgcgagaa
atcttggttaaaatgcgattcgaaatagtttcaactgatttaaggataaa
agaatatattgatttcataaggatatatttttgggcgggcattttgtgaa
aattggtagtcgcatcacattatcattgaaagtttcttatcttaaaatct
tcacgtctaagtgggcagcggttttcatatgggcattatgggcagcttcc
cctagcagtttggagtattgtgcttattatgtgaagtttttttacaattt
ttcatgacaaggctattattttccaatatacttgttaaaaatgtaatgtc
ttttcattcatcttaaacaTTCCCgtgagtatacccaaaattaatcatct
tattcccaaagcaaccaaacagctgtttgcttccgatgataaatcagaat
agaacaaaggGCATTGATTCACCATCTGtatttattaccttcatggtctC
ACATTTCTTGTATCAGGAAATTGGATAAACTATTCAAAAACTTGTCTCAT
TTAGTCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCGAAGAACTG
TGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGATTATGAATTGGA
TTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAGACATGGCTGCTG
ATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGACCAACAtat
aaaggtttgttttttgaTCAATTGAATATACAGATGCTATATGAAAGTGA
ACCATGATTTTTCGTCTGTCCCTTGAGCACCTTGAGCAAAGAGAATTGAA
ATATGTACACTATAGTTTAGCGAATTTATTCTTATTAAGACacacgtttt
cttttataagaacatggggcttcaatggccaaaatgttaagaacaagtta
agaatattttaaggctttgtgtaCTCAAAAACAAccgttttcttaggaaa
atgggtgaAAATGGTCTCAAAAagcttgaaacccaaaaagttaagaacat
cccttcaaggcttcaaaattttggatgttctcattaaaaaaaacgtgtaa
agttATCAACTATGACAATCAAGAAGACAAGACATACAAGATCGTTTTTT
AGGGTATTCATTGTCTcatttttgttaactttttatcaattttcatacAG
CCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACTGGTGTAGCTGAA
GAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATTCATTAATGCATG
CTACAAGACCGACTGTATGCGACTTTGTTATCAATATCTGAAAttcaaaa
agataatcaataaaTCACCTGAAGAATTCAAACAAGAATTGTACGATATG
TGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGGTTTGTCTGCCCTCT
TTTTAAATGGTCATTAATCAAAGTAGCCTTGAAATTTAATCACATTGAAC
TCGGTCACAAAGCAAACAGTTTtcaatgaaagttgaaattaTGGTGTGAA
GAATAGAAGGTGACTTGTAATGTTAATTAAGAATTCAATCTAAAGTCTGT
CAAAgcgaagaattgaaaaatatctgaaatattCATGCTTGATCTTTCTA
AATGGAGGGTGCATATTTCTATAGATTCATAAAATATGCGTTTGATTGTA
TTTCATTCAGCATGTTTAATTATCCCTTTCAACTTAATTTACTAACCAAA
ACCattttttcttagaaaattcgATTCATCTGGTTTTGAACACGTGTTTG
TCGGAGAGACCAGGGGCGATAAAGAAGTCATCGGATTCCACAACTGGATT
CAATTCTACTTACAAGAGAAAGCTAAGAATGTTGATTACAAAGGATTCAT
GGCTAGTGACAGGGTTGgtaacattttctttttctttaaaggaATAATGA
GATGGTCTGAGATTTTAAGGGTACCACTGGTCTTATACATGAGAAAACGT
GATTCCCGAGTAGTTTTGTCAACTGACAAGTCTGTGTCAAGATATTCCAc
tttaaaatttcgaattcTGAGCTCTTTCCAACGTGAGAGGTCCGCGAGAG
GTcccactgtttttttttaagttccTGAAAAGTCCGTCTGACTTGTCGAA
GGTGAGTTATATCTCAGGGGGTCTTGTAGAATTATCTCAACGATAATCGA
CGATTTATATTGTACATTCTTGACTCAAAATAGGAATTTTCATGGTTTTA
TGCTCACATcataaaagtgtaaaaaagtataaaagtgTTACCCATTAAGA
TAAATAATTTACAAATGCTTTGCAGGACTTTACACTCTAAACCCCCTGAC
CGAAAGGTTTTCTTCGGAACCGTTTAAACGGCGATAATACTAAAAAATCG
CTCCTCAACGATCTGCATAAACAAATGAACGAATGTGAAAGCAAATGCCT
CTCGGAATTTTGTGAGTTTGTAAGCCAACTCGGTTTACAATAACAAACTG
GAAAGCGCGATGCGAGATCCATAAAAAGACATGGCGACtgctttttgaaa
tctttttttttaaccaaGAATTTGAGTTGGAGATTAAGAAACATTATTAA
AGTTTTGGGTAAGGAAAAATGCAGTCTGTTTTTCCTTTTAGTTTCAGTAG
TGAAATATCTCAATCTTGGCAACCAACTGATTATCCATTTAAGAATTAAA
AGTCATTATTATCGTCAATAATTGGGCTTTCTTTTCCGTGTTTTTCCAAG
TATAAATTCTTCAATCATCATTAATACCATTTATTGAGCGTAAAACTCGA
TCTTAGGAAGTCGAAATCTGTAATATAtaaactatttaaaaaaatcaaga
tttattCCATCATTTCTTATCAACTTGCCGTAAATCtatctttctttttc
attcaacagAACCCTCACTTATTGACAGTCCAATTCTCATGGAAAGGCGA
AGTCAAACCAAAAGGCGGTATCTTCATCGGTGTCTCACCTGAATTTGAGC
TAGCTCTTTACACAGTCTGCTATATGTTAGGTGAGCACTCTTATAAGATC
ACATTGGGCGGAGAAGAGGTGATCATCAAGTGCCATCAGACTGCAGGTAA
GATCGGTACTTGTTACCCACAGTTACCCCGATGGCAGGGAAGAAGAAAGT
AAAAAGTCGTTCACGTGAACATTTCAAAACGATCCTGAAAACGCTTGCGA
AAGATTTTACAGTATGAATCCATGGTATTTTATTCATCGTTTTATATGTT
TTTAGTCGCGCCTTTCAGGTAGTTCATTTCAATTAAAGTGTGTGGTGAGG
GCTAGAGGGAATGCGAACATGAAGTGGATTTTGATTAgaatttttcaatt
aattttagTGGCATAATTTTTGCCTTttagttgtttatttttttaacttt
tttatttttattttcgtattATGGCTTTTTCGTACATGTCCACTTGCTTT
TTTTAATCTCTTTTTGTAATACATCTTTCTTTATTCTCaagattattttt
caatttatatttttgatgggagaaatttacaatttacacATTCATGAACT
TTTCGTATccaatttgtattttattattaGTCACGATggaataaatgaat
aaataaattttattttcaaaaataa Coding sequence (CDS) from alignment at scaffold_268:94536..102210+ >TCONS_00056147 ID=TCONS_00056147|Name=TCONS_00056147|organism=Clytia hemisphaerica|type=CDS|length=4230bp|location=Sequence derived from alignment at scaffold_268:94536..102210+ (Clytia hemisphaerica) ATGCCCTACAGAGAAGAGGATCCACCTTTTGAGGATAATGGTTTGAACAA CTGGTGCGAAGAACTGTGGAAGAATGATAAGAATCGTTTAACTCCTGATC AAGATTATGAATTGGATTTGCAAGGACGTACTCGTTTCTCTTATGACGGA CCAGACATGGCTGCTGATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCT TGCGAGACCAACAtataaagCCTTTGTTGCTCTCTTGGACAACTACGAAA CAGCCACTGGTGTAGCTGAAGAGGTCACCCCAAAAGAACTACGTGAGAAT TGGGAATTCATTAATGCATGCTACAAGACCGACTGTATGCGACTTTGTTA TCAATATCTGAAAttcaaaaagataatcaataaaTCACCTGAAGAATTCA AACAAGAATTGTACGATATGTGGTTCAAAATGTACAGGCGATCGAGGGAA ACTAGaaaattcgATTCATCTGGTTTTGAACACGTGTTTGTCGGAGAGAC CAGGGGCGATAAAGAAGTCATCGGATTCCACAACTGGATTCAATTCTACT TACAAGAGAAAGCTAAGAATGTTGATTACAAAGGATTCATGGCTAGTGAC AGGAACCCTCACTTATTGACAGTCCAATTCTCATGGAAAGGCGAAGTCAA ACCAAAAGGCGGTATCTTCATCGGTGTCTCACCTGAATTTGAGCTAGCTC TTTACACAGTCTGCTATATGTTAGGTGAGCACTCTTATAAGATCACATTG GGCGGAGAAGAGGTGATCATCAAGTGCCATCAGACTGCAGGTAAGATCGG TACTTGTTACCCACAGTTACCCCGATGGCAGGGAAGAAGAAAGTAAATGC CCTACAGAGAAGAGGATCCACCTTTTGAGGATAATGGTTTGAACAACTGG TGCGAAGAACTGTGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGA TTATGAATTGGATTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAG ACATGGCTGCTGATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCG AGACCAACAtataaagCCTTTGTTGCTCTCTTGGACAACTACGAAACAGC CACTGGTGTAGCTGAAGAGGTCACCCCAAAAGAACTACGTGAGAATTGGG AATTCATTAATGCATGCTACAAGACCGACTGTATGCGACTTTGTTATCAA TATCTGAAAttcaaaaagataatcaataaaTCACCTGAAGAATTCAAACA AGAATTGTACGATATGTGGTTCAAAATGTACAGGCGATCGAGGGAAACTA GaaaattcgATTCATCTGGTTTTGAACACGTGTTTGTCGGAGAGACCAGG GGCGATAAAGAAGTCATCGGATTCCACAACTGGATTCAATTCTACTTACA AGAGAAAGCTAAGAATGTTGATTACAAAGGATTCATGGCTAGTGACAGGA ACCCTCACTTATTGACAGTCCAATTCTCATGGAAAGGCGAAGTCAAACCA AAAGGCGGTATCTTCATCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTA CACAGTCTGCTATATGTTAGGTGAGCACTCTTATAAGATCACATTGGGCG GAGAAGAGGTGATCATCAAGTGCCATCAGACTGCAGGTAAGATCGGTACT TGTTACCCACAGTTACCCCGATGGCAGGGAAGAAGAAAGTAAATGCCCTA CAGAGAAGAGGATCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCG AAGAACTGTGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGATTAT GAATTGGATTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAGACAT GGCTGCTGATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGAC CAACAtataaagCCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACT GGTGTAGCTGAAGAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATT CATTAATGCATGCTACAAGACCGACTGTATGCGACTTTGTTATCAATATC TGAAAttcaaaaagataatcaataaaTCACCTGAAGAATTCAAACAAGAA TTGTACGATATGTGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGaaa attcgATTCATCTGGTTTTGAACACGTGTTTGTCGGAGAGACCAGGGGCG ATAAAGAAGTCATCGGATTCCACAACTGGATTCAATTCTACTTACAAGAG AAAGCTAAGAATGTTGATTACAAAGGATTCATGGCTAGTGACAGGAACCC TCACTTATTGACAGTCCAATTCTCATGGAAAGGCGAAGTCAAACCAAAAG GCGGTATCTTCATCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTACACA GTCTGCTATATGTTAGGTGAGCACTCTTATAAGATCACATTGGGCGGAGA AGAGGTGATCATCAAGTGCCATCAGACTGCAGGTAAGATCGGTACTTGTT ACCCACAGTTACCCCGATGGCAGGGAAGAAGAAAGTAAATGCCCTACAGA GAAGAGGATCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCGAAGA ACTGTGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGATTATGAAT TGGATTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAGACATGGCT GCTGATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGACCAAC AtataaagCCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACTGGTG TAGCTGAAGAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATTCATT AATGCATGCTACAAGACCGACTGTATGCGACTTTGTTATCAATATCTGAA AttcaaaaagataatcaataaaTCACCTGAAGAATTCAAACAAGAATTGT ACGATATGTGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGaaaattc gATTCATCTGGTTTTGAACACGTGTTTGTCGGAGAGACCAGGGGCGATAA AGAAGTCATCGGATTCCACAACTGGATTCAATTCTACTTACAAGAGAAAG CTAAGAATGTTGATTACAAAGGATTCATGGCTAGTGACAGGAACCCTCAC TTATTGACAGTCCAATTCTCATGGAAAGGCGAAGTCAAACCAAAAGGCGG TATCTTCATCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTACACAGTCT GCTATATGTTAGGTGAGCACTCTTATAAGATCACATTGGGCGGAGAAGAG GTGATCATCAAGTGCCATCAGACTGCAGGTAAGATCGGTACTTGTTACCC ACAGTTACCCCGATGGCAGGGAAGAAGAAAGTAAATGCCCTACAGAGAAG AGGATCCACCTTTTGAGGATAATGGTTTGAACAACTGGTGCGAAGAACTG TGGAAGAATGATAAGAATCGTTTAACTCCTGATCAAGATTATGAATTGGA TTTGCAAGGACGTACTCGTTTCTCTTATGACGGACCAGACATGGCTGCTG ATCCTCTCTTTGCTTCTGTATCTAGAGAAGCTCTTGCGAGACCAACAtat aaagCCTTTGTTGCTCTCTTGGACAACTACGAAACAGCCACTGGTGTAGC TGAAGAGGTCACCCCAAAAGAACTACGTGAGAATTGGGAATTCATTAATG CATGCTACAAGACCGACTGTATGCGACTTTGTTATCAATATCTGAAAttc aaaaagataatcaataaaTCACCTGAAGAATTCAAACAAGAATTGTACGA TATGTGGTTCAAAATGTACAGGCGATCGAGGGAAACTAGaaaattcgATT CATCTGGTTTTGAACACGTGTTTGTCGGAGAGACCAGGGGCGATAAAGAA GTCATCGGATTCCACAACTGGATTCAATTCTACTTACAAGAGAAAGCTAA GAATGTTGATTACAAAGGATTCATGGCTAGTGACAGGAACCCTCACTTAT TGACAGTCCAATTCTCATGGAAAGGCGAAGTCAAACCAAAAGGCGGTATC TTCATCGGTGTCTCACCTGAATTTGAGCTAGCTCTTTACACAGTCTGCTA TATGTTAGGTGAGCACTCTTATAAGATCACATTGGGCGGAGAAGAGGTGA TCATCAAGTGCCATCAGACTGCAGGTAAGATCGGTACTTGTTACCCACAG TTACCCCGATGGCAGGGAAGAAGAAAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056147-exon-scaffold_268-1491911889:94536..94835 | TCONS_00056147-exon-scaffold_268-1491911889:94536..94835 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1510915933:94536..94835 | TCONS_00056147-exon-scaffold_268-1510915933:94536..94835 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1575043694:94536..94835 | TCONS_00056147-exon-scaffold_268-1575043694:94536..94835 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1491911889:99140..99339 | TCONS_00056147-exon-scaffold_268-1491911889:99140..99339 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1510915933:99140..99339 | TCONS_00056147-exon-scaffold_268-1510915933:99140..99339 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1575043694:99140..99339 | TCONS_00056147-exon-scaffold_268-1575043694:99140..99339 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1491911889:99786..100020 | TCONS_00056147-exon-scaffold_268-1491911889:99786..100020 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1510915933:99786..100020 | TCONS_00056147-exon-scaffold_268-1510915933:99786..100020 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1575043694:99786..100020 | TCONS_00056147-exon-scaffold_268-1575043694:99786..100020 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1491911889:100351..100498 | TCONS_00056147-exon-scaffold_268-1491911889:100351..100498 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1510915933:100351..100498 | TCONS_00056147-exon-scaffold_268-1510915933:100351..100498 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1575043694:100351..100498 | TCONS_00056147-exon-scaffold_268-1575043694:100351..100498 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1491911889:101495..102210 | TCONS_00056147-exon-scaffold_268-1491911889:101495..102210 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1510915933:101495..102210 | TCONS_00056147-exon-scaffold_268-1510915933:101495..102210 | Clytia hemisphaerica | exon |
TCONS_00056147-exon-scaffold_268-1575043694:101495..102210 | TCONS_00056147-exon-scaffold_268-1575043694:101495..102210 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_268 | supercontig | scaffold_268:94536..102210 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR018998 | Endoribonuclease_XendoU |
Vocabulary: Molecular Function
Term | Definition |
GO:0016788 | hydrolase activity, acting on ester bonds |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0016788 |
hydrolase activity, acting on ester bonds |
Blast
BLAST of TCONS_00056147 vs. Swiss-Prot (Human)
Match: ENDOU (Poly(U)-specific endoribonuclease OS=Homo sapiens GN=ENDOU PE=1 SV=2) HSP 1 Score: 155.606 bits (392), Expect = 1.367e-41 Identity = 95/245 (38.78%), Postives = 138/245 (56.33%), Query Frame = 2
Query: 338 EELWKNDKNRLTPDQDYELDLQGRTRFS--YDGPDMAADPLFASVSREALARPTYKAFVALLDNYETATGVAEEVTPKELRENWEFINACYKTDCMRLCYQYLKFKKIINKSPEEFKQELYDMWFKMYRRSRETRKFDSSGFEHVFVGETRGDKEVIGFHNWIQFYLQEKAKNVDYKGFMAS---DRNPHLLTVQFSWKGEVKPKGGIFIGVSPEFELALYTVCYMLGEHSY-KITLGGEEVIIK 1054
E++++ D N+ +D L+ Q S + D PLF V+ + ++PTY AF+ LL+NY+ ATG E + +EL E F+ KT M+ Y +L + S +EF +L +MWF +Y R E + DSSGFEHVF GE + K V GFHNWI+FYL+EK VDY + D P +L +QF+W G K G FIG SPEFE ALY++C++ +++LGG + ++
Sbjct: 146 EKIYRADTNK-AQKEDIVLNSQNCISPSETRNQVDRCPKPLFTYVNEKLFSKPTYAAFINLLNNYQRATGHGEHFSAQELAEQDAFLREIMKTAVMKELYSFLHHQNRYG-SEQEFVDDLKNMWFGLYSRGNE--EGDSSGFEHVFSGEVKKGK-VTGFHNWIRFYLEEKEGLVDYYSHIYDGPWDSYPDVLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLCFIARPGKVCQLSLGGYPLAVR 385
The following BLAST results are available for this feature:
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