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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056160 ID=TCONS_00056160|Name=TCONS_00056160|organism=Clytia hemisphaerica|type=transcript|length=2837bpRun BLAST on NCBI protein sequence of TCONS_00056160-protein >TCONS_00056160-protein ID=TCONS_00056160-protein|Name=TCONS_00056160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp MASTSSAAAEPDGTFEEIEQVNNEQVEETLVGKEPGAKNPNESLFAAESFRun BLAST on NCBI transcript from alignment at scaffold_268:56362..78227- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056160 ID=TCONS_00056160|Name=TCONS_00056160|organism=Clytia hemisphaerica|type=transcript|length=21866bp|location=Sequence derived from alignment at scaffold_268:56362..78227- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_268:56362..78227- >TCONS_00056160 ID=TCONS_00056160|Name=TCONS_00056160|organism=Clytia hemisphaerica|type=CDS|length=27540bp|location=Sequence derived from alignment at scaffold_268:56362..78227- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056160 vs. Swiss-Prot (Human)
Match: MON1A (Vacuolar fusion protein MON1 homolog A OS=Homo sapiens GN=MON1A PE=1 SV=2) HSP 1 Score: 470.7 bits (1210), Expect = 2.590e-154 Identity = 233/515 (45.24%), Postives = 339/515 (65.83%), Query Frame = 1
Query: 184 GKEPGAKNPNESLFAAESFEDLSNEAVGKLDGECSARTLSVGSRGXXXXXXXXXXXXXXXXXQPSQ-----QKVDESKAPETLDE-----VRMKRAESIQERQSSIE-DMNDP--VWKGHKKHVFILSEAGKPIYTRYGNEENLVTMMGLMQAIVSFVQDNKDSIKCVSAGNHKFVFLVRGPLILVVVSSSKDSQTQLNVQLTYVYHQVLSVLTFTQLTRIFEHRRNYDLRKLLSGTERFIDNLLNLMSHDPSYLLTAVRCLPLPSNIRDHISQALQSPKSKELLFAILVVDNQLVTMVRPKKISLHPSDLYLIFNLVSGSTSFHTAESWTPICLPRFDNSGYLYAHVSYLEDDCPACLLLMSTDRNAFFELSDCKAKILEKMQKYNCLQLLTSAAKKGNYKTEQVGISELWHFIYKSRSSSQFTSPQVGAPYNTADEKERLFGLYLHLHDRMHSISRPLKMLCYTTPKEMLLGWVSPAFELYAAFTPLTSKATAMNAITRLLRWIKNEEDVLFI 1689
G EPGA A S+EDL+ DG S + G+RG ++ S+ +Q + + E P + ++ + R + R+ + E D D W+ H+KHVF+LSEAGKP+Y+RYG+EE L + MG+M A+VSF++ +K++I+ + A +K VF+ R PL+LV V+ ++ S +L +L Y+Y+Q+LS+LT QL+ IF+ ++NYDLR+LLSG+ER DNLL LM+ DPS+L+ A RCLPL + +RD +S +LQ +++ L+F+IL+ NQLV +VR K LHP DL+L+FNL+S S+SF E+WTP+CLP+F+ +G+ +AH+SYLE D CLLL+STDR FF +SDC+ + E+++K L A + Y QVGI +L HF+YKS+SS FTSP++ APY + +E+ERL GLY +LH R H+ SRPLK + YT P E LL WV+ AFELY ++PL +KA+A++AI +L+RWI+ EED LFI
Sbjct: 39 GMEPGAGQEGAMFVHARSYEDLTESE----DGAASGDSHKEGTRGPPPLPTDMRQISQDFSELSTQLTGVARDLQEEMLPGSSEDWLEPPGAVGRPATEPPREGTTEGDEEDATEAWRLHQKHVFVLSEAGKPVYSRYGSEEALSSTMGVMVALVSFLEADKNAIRSIHADGYKVVFVRRSPLVLVAVARTRQSAQELAQELLYIYYQILSLLTGAQLSHIFQQKQNYDLRRLLSGSERITDNLLQLMARDPSFLMGAARCLPLAAAVRDTVSASLQQARARSLVFSILLARNQLVALVRRKDQFLHPIDLHLLFNLISSSSSFREGEAWTPVCLPKFNAAGFFHAHISYLEPDTDLCLLLVSTDREDFFAVSDCRRRFQERLRKRGAHLALREALRTPYYSVAQVGIPDLRHFLYKSKSSGLFTSPEIEAPYTSEEEQERLLGLYQYLHSRAHNASRPLKTIYYTGPNENLLAWVTGAFELYMCYSPLGTKASAVSAIHKLMRWIRKEEDRLFI 549 The following BLAST results are available for this feature:
BLAST of TCONS_00056160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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