TCONS_00056183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056183
Unique NameTCONS_00056183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056183 ID=TCONS_00056183|Name=TCONS_00056183|organism=Clytia hemisphaerica|type=transcript|length=567bp
AATTCCTATTCCAAAAGATCTCAGAACTGAAATAGCAAAGAAAAAGCGTC
TACATAGAAAATGGATGAAATCATCGCCGCGAGAGAAAGACGAGAATCGC
CTGAAATACACCCGTGTACGCAACCAAGTGACGAAAATGATGACACAAGC
CCATAGAAATTACGAACGGAAAATCTgcaacaattcaaaaacaaaaccaa
aagttttctggTCATATGTCAGGAGCAAAATGAAATCTTCCAGTACGGTA
TCATCATTACTTGAGGCaccaaatgacaaaaattctttgaaatatGAAGA
CCATGAAAAGGCGAATATACTTCAACGTCAATTCTGCAGTGTTTTCACAA
GAGAGCCTCCTGGTGAGCTACCGGACTTCGAGAAAAGAACTGAGTCCGTA
ATCGATGAATTccatataacaaaagaaatgatCCAGATCGAAATAAAACA
TCTAAATCAAATTAAATCATTTGGTCCTGATGGAATACATCCTAAGATGC
TACTGTCGTTATCTGACTACGTCTCTGAACCTCTTGCAGTAATAATGAAC
ACATCATTAAAGGAAGG
Run BLAST on NCBI

protein sequence of TCONS_00056183-protein

>TCONS_00056183-protein ID=TCONS_00056183-protein|Name=TCONS_00056183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
IPIPKDLRTEIAKKKRLHRKWMKSSPREKDENRLKYTRVRNQVTKMMTQA
HRNYERKICNNSKTKPKVFWSYVRSKMKSSSTVSSLLEAPNDKNSLKYED
HEKANILQRQFCSVFTREPPGELPDFEKRTESVIDEFHITKEMIQIEIKH
LNQIKSFGPDGIHPKMLLSLSDYVSEPLAVIMNTSLKE
Run BLAST on NCBI

transcript from alignment at scaffold_268:123255..123821

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056183 ID=TCONS_00056183|Name=TCONS_00056183|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at scaffold_268:123255..123821 (Clytia hemisphaerica)
CCTTCCTTTAATGATGTGTTCATTATTACTGCAAGAGGTTCAGAGACGTA
GTCAGATAACGACAGTAGCATCTTAGGATGTATTCCATCAGGACCAAATG
ATTTAATTTGATTTAGATGTTTTATTTCGATCTGGatcatttcttttgtt
atatggAATTCATCGATTACGGACTCAGTTCTTTTCTCGAAGTCCGGTAG
CTCACCAGGAGGCTCTCTTGTGAAAACACTGCAGAATTGACGTTGAAGTA
TATTCGCCTTTTCATGGTCTTCatatttcaaagaatttttgtcatttggt
GCCTCAAGTAATGATGATACCGTACTGGAAGATTTCATTTTGCTCCTGAC
ATATGAccagaaaacttttggttttgtttttgaattgttgcAGATTTTCC
GTTCGTAATTTCTATGGGCTTGTGTCATCATTTTCGTCACTTGGTTGCGT
ACACGGGTGTATTTCAGGCGATTCTCGTCTTTCTCTCGCGGCGATGATTT
CATCCATTTTCTATGTAGACGCTTTTTCTTTGCTATTTCAGTTCTGAGAT
CTTTTGGAATAGGAATT

Coding sequence (CDS) from alignment at scaffold_268:123255..123821

>TCONS_00056183 ID=TCONS_00056183|Name=TCONS_00056183|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_268:123255..123821 (Clytia hemisphaerica)
TTCCTTTAATGATGTGTTCATTATTACTGCAAGAGGTTCAGAGACGTAGT
CAGATAACGACAGTAGCATCTTAGGATGTATTCCATCAGGACCAAATGAT
TTAATTTGATTTAGATGTTTTATTTCGATCTGGatcatttcttttgttat
atggAATTCATCGATTACGGACTCAGTTCTTTTCTCGAAGTCCGGTAGCT
CACCAGGAGGCTCTCTTGTGAAAACACTGCAGAATTGACGTTGAAGTATA
TTCGCCTTTTCATGGTCTTCatatttcaaagaatttttgtcatttggtGC
CTCAAGTAATGATGATACCGTACTGGAAGATTTCATTTTGCTCCTGACAT
ATGAccagaaaacttttggttttgtttttgaattgttgcAGATTTTCCGT
TCGTAATTTCTATGGGCTTGTGTCATCATTTTCGTCACTTGGTTGCGTAC
ACGGGTGTATTTCAGGCGATTCTCGTCTTTCTCTCGCGGCGATGATTTCA
TCCATTTTCTATGTAGACGCTTTTTCTTTGCTATTTCAGTTCTGAGATCT
TTTGGAATAGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035375XLOC_035375Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056183-proteinTCONS_00056183-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056183-exon-scaffold_268-1491911889:123255..123821TCONS_00056183-exon-scaffold_268-1491911889:123255..123821Clytia hemisphaericaexon
TCONS_00056183-exon-scaffold_268-1510915933:123255..123821TCONS_00056183-exon-scaffold_268-1510915933:123255..123821Clytia hemisphaericaexon
TCONS_00056183-exon-scaffold_268-1575043694:123255..123821TCONS_00056183-exon-scaffold_268-1575043694:123255..123821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_268supercontigscaffold_268:123255..123821 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.73926	3.40248	4.76203	4.88966	0.835981	0.431626	1.20664	0.626924	0.694045	0.82752	0.319985	1.10731	0.754152	1.14123	1.00419	0.983969	0.154079	0.610011	1.17378	1.32284	1.35783	2.04018	1.22203	0.765425	1.06513	0.664711	1.4935	1.82434	0.907134	1.18961
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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