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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056204 ID=TCONS_00056204|Name=TCONS_00056204|organism=Clytia hemisphaerica|type=transcript|length=474bp
GGAtgacgaaaatgaaaatttagatgGAGCTTCGTTCCAGGAGCACAGTG
AGCACATGcaATGTGGAAGTGAAATGAAGAACTGCAAAGACGTCAAAGAG
ATTTGTCCATATTGCAAATCAGCAATTTATGAAATGGAAATTCTTGGTGA
AAAAACGAAAGCCTTTTGTGACTTGACTACAGACAGTGGCGGTTGGCTGC
AAATAACAAATATCAAATTCGACGACGCAAACAAAATCGATTCAATCTAT
ACAAATCACATAGCTCAGCCATCGTCTATCACTGACCTCCAAAATGCACC
AAACTCGCAATTCATGTTGGACCCACTTGCCTTACAAAGCCTTTTCAATG
ACGAAGGTTACAGCGAGCTAAGAATCAAATGCTATAAACCATGGCACGGC
AGAACCCTTGACGTCGTTCTATACGGTGAAAAGATACACAAATATGTAAA
TAGCGAAGCGCGGACCCTCGGTGG Run BLAST on NCBI transcript from alignment at scaffold_269:294221..303049+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056204 ID=TCONS_00056204|Name=TCONS_00056204|organism=Clytia hemisphaerica|type=transcript|length=8829bp|location=Sequence derived from alignment at scaffold_269:294221..303049+ (Clytia hemisphaerica)
GGAtgacgaaaatgaaaatttagatgGAGCTTCGTTCCAGGAGCACAGTG
AGCACATGGTAAGCgaatttttttataggaacaacttttaagaacaatga
gactaaaaatgccaaaaataacAACAATAGATTGTATcggatttctttat
ttttctaaaaaagcgttgtctggtgggattgtttcgggagtattacaaat
agaattccctcgagtaATTCCTAAAAGatatttctattgtaatactccca
aaacaatcccacaaagcatcgtttttttagaaaaatgaaaaactccgAAA
AGATCTATTGTCAACGAACCCTTAGAGAAACCAAACCTTACCGTCCTAAT
ACCCAGCATCTATTTTTTACCCCCTCCCCCCAGGCCCAGTGTGGAAACAA
TGCAAAGTCCATGACGAATTGTTATTTGTTAAAACTGAGGTCTACATCAA
AAAGAGTTCCGCTTTGGCAGGCGAAATGTCAGGGGAGTGGGGTCTGGGTG
GCGGTGTTAGTCTCCCAAATGGGTCCAGGGCTGAGCATTGGATGGGGTTC
AGCGGGTAAACGCCCCGAAAGCCCTGGGATATTGGATCTTCTCACACcta
aaagttgctcaaaatttgCTATATTGTATAGTTTTATAATTAATAAGGCT
AGAAAAACAGCTTGTATTGCTGGTACATATAAGTTTGATGCGCTTAAACC
TGGTGTAATAAAATCGGGCGTTACAATGGCAGCTCTCCTCTCGTCTCGGA
AAGCTTTGACTTACGCCAATATCTTACTTTATATATGCTCCTTACGCTAA
TACGCCAAATGCTATTACTGCCGGCGTACTGTGCAACATTTCCAGGCTGG
CCTCTGGCTTTATAGAGGCTGGAAATTCGTACTCTTAGTccctttctttt
aattttctttctttagcaATGTGGAAGTGAAATGAGGAACTGCAAAGACG
TCAAAGAGATTTGTCCACATTGCAAATCAGGAATTTATGAAATGGAAATT
CTTGGTGAAAAAACGAAAGCCTTTTGTGACTTGACTACAGACGGTGGTAA
GATATTTTGAGTTAATCTTTCGTCCACCGAATGTGCCNCTACAGACGgcg
gtaaaatatttttgatttaatttttcgTCCAACGAATGTGCCAGCCCATA
GTGCTTAGTTCACTAATTTAAGCTATCCaaacaaaatttctatttttttt
gaagGCAACAAAACATATAAAAGAACGTCAAAACACGAGATATTATTATA
GAAAGATCAAAAGAAATGTCCAatgacaaaaaagttaaaagaaattttaa
agaaatttttccatAAATCTTTTAATCAAACATTTTTATAGGCGGCTGGC
TGCAAATAACGAATATCAAATTCGACGACGCAAGTAAAGTCAACTCAATA
TATACGAATCACATAGCTCAGCCATCGTCTATCGCTGACCTCCAAAATGC
ACCAAACTCGCAATTCATGTTGGACCCACTCGCCTTACAAAGCCTTTTCA
ATGACGAAGGTTACAGCGAGCTAAGAATCAAATGCTATAAATCATGGCAC
GGCAGAACCCTTGACGTCGTTCTATACGGTGAAAAGATACACAAATATGT
AAATAGCGAAGCGTTCACCGTCGGAGGATGCGACGCAGTTCGGTTTTTAC
CAGGTGATAACTCATCAATGTTCCTGTCCCCTTGTGCTGATTACAGAATC
GGAACAGGTGATTATTTGTTTTATCAATTCCCCCTTTGGATATGGGGAAA
CGGTCACGTGACTATTTTAAAATCTACCGCTCGGTATGAATGCGATGACG
TTAGCAGTGAGATTAACCATGACATTCAACAAAGATATCTTGGTTATTGg
tatttttatataagataaAAATTAGTCTCTTTTGAAAGACATTATTCTTT
AAGGAACACAAAACACATCTATGAACCCCATACACATAGTGCATCTATGA
ACCCCATACACCAAGTGCATCTATGAACCCCATACACATAGTGCATCTAT
GAACCCCATACACCAAGTGCATCTATGAACCCCATACACCAAGTGCATCT
ATGAACCCCATACATCAAGTGCATCTATGAACCCCATACACCAAATGCAT
CTATGAACCCCATACACCAAGTGCATCTATGAACCCCGTACACCAAATGC
ATCTATCAATACCATACACCAAGTGCATCTATGAACCCCATACACCAAAT
GCATCTATGAACCCCATACACCAAGTGCATCTATGAACCCCGTACACCAA
ATGCATCTATCAATACCATACACCAAGTGCATCTATGAACCCCATACACC
AAATGCATCTATGAACCCCATACACCAAGTGCATCTATGAACCCCGTACA
CCAAATGCATCTATCAATACCATACACCAAGTGCATCTATGAACCCCATA
CACCAAATGCATCTATGAACCCCATACACCAAATGCATCTATGAACCCCA
TACACCAAATGCATCTATCAATACCATACACCAAGTGCATCTATGAACCC
CATACACCGAGTGCATCTATAAATCCCATACACCGAGTGCATCTATAAAC
CCCATACACCGAGTACATCTATAAACCCCATACACCGAGTGCATCTATAA
ACCCAATACACCGAGTGCATCTATAAACCCAATACACCGAGTGCATCTAT
AAACCCCATACACCAAGTGCATCTCTCAACCCCATACACCGAAAGCATCT
ATCAACCCCATGAACCAAGTGCATTTATGAACCCTATACACCAAGTGCAT
CTATGAACCCATACACCAAGTGCATCTATCAACCCATACACCAAGTGTAT
CTATAAACCCCGTAAACCAAGTGCATCTATGAACCCCATACACCAAGTGC
ATCTATGAACCCCATAAACCAAGTGCATCTATCAACCCCATTCCCAAGTG
CATCTATGAACCCCATCAACCAAGTGCATCTATGAACCCCATAAACCAAG
TGCATCTATGAACCCCATACACCAAGTGCATCTATGAACCCCATACACCA
AGTGCATCTATGAACCCCATAAACCAAGTGCATCTATGAACCCCATACAC
CAAGTGCATCTCTCAACCCCATACACCGAAAGCATCTATCAACCCCATGA
ACCAAGTGCATTTATGAACCCTATACACCAAGTGCATCTATGAACCCATA
CACCAAGTGCATCTATCAACCCATACACCAAGTGTATCTATAAACCCCGT
AAACCAAGTGCATCTATGAACCCCATACACCAAGTGCATCTATGAACCCC
ATAAACCAAGTGCATCTATCAACCCCATACACCAAGTGCATCTATGAACC
CCATAAACCAAGTGCATCTATGAACCCCATACACCAAGTGCATCTATGAA
CCCCATACACCAAGTGCATCTATAAACTCCATAAACCAAGTGCATCTATG
AACCCCATACACCAAGAGCATCTCTCAACCCCATACACCAAGAGCATCTC
TCAACCCCATACACCGAAAGCATCTATCAACCCCATGAACCAAGTGCATT
TATGAACCCTATACACCAAGTGCATCTATTAACGCCAAGTGCATTTTAAA
AGGGTTTGGGTTCGAGTAAACATTGGTTGAATGACGTCATATACCTGAAG
TCGCTGCATTGACTGATCGCATTGTGATGCCATCTAACCTCGTGTAAAGT
CGAACTTCAACACCATTTAGCGAAAGGGTGTATCTATCTGATTATGCGTT
TGTATGTTTTTTTGATATATTTGAGgatttacttttgactttttccccat
tttgtatgtattttgatgaacttgtgTAAATAAGTGTACGTAggtgtgtt
tatcaaaaaaaaaaattgcaatttattgtttctccactattacttttctt
caatcaccttcatttggattaggtttttatTTCACATACCAATGTTTaag
tttttgctaaatttcattcatgattcttctttttttttaaaaattttaca
ttgGCACAAACCAATCCAGCCTTTCATATAATATTCCAAAAATGGTATGT
TAGAAAAGTTGGACCGATTTTCCCTAGCCCTtttaagaacacgaggcttc
aATGAGCTTCTTAAGAAATGGCACGACAATAATCACAAAGTGGTGAAATG
AGGTTGCAACGAGGTGAAGAAAATAGACTAAAACTTTTTTGAACACTTTC
GACGTTAAACAAGCACGTTAAATACATTTTAATATTTGTGATTTCGGTTC
CCCTTCAATGGGAAGTGTCATGAATAACCTCTTGTTTAACAACAAGACGA
CATTTCGTCTCGTTTTTGCTCAGCGTCACCGGAAAGTTTGCAGTCTCaaa
cctttttttgaaaagggtTAATTGTAAAAGGGTTAATTGTAGACTATGCT
AAAGTCTAAGACGAATTCGAATAATAAAGAATAACCTCAAACACGCAAAT
TAGCAGTCGAATAGAAATTTTGTCTGTGCGGGCAAAAAATAGTCGGAGGG
GCTCAATGTACAGTCTCTATTTTCCGCCACGCAACATAATaacttttata
atatacaactaTGCTATATCgtaatatcataataatatattacatGATGC
TATCGCATCGTCTAGGTTAAATAATAACATAGTCAGTtgtcccagggggg
gggggggtttNctcaaaaaaattttgctccccgtatggagactcaactgt
atttattttttactgGCAGCTCTAACTCCATCTTTTAAGAATTCTTTCTT
CCATCCCCgcggggtactagggttggcgaatgaggggtatgtgcggacgg
gacctccgaaaaccgacccttggagagactgatttttgctgaaaaggtga
cccttagagagactttctgaattttttttttcgatttttgaaaaaagtca
tacccttagagagactttattacaattttttctctggaaatcaaaaaatt
tcctaaacatcctgaattttccaacccttagagagactaatttaaaactt
tctgatttttccgacccttagagagactttaaaaggtgaaaaaaccgacc
gttaccgtccgcacatacccatcatccatttttgcctaagtacccccccc
ccggtcAGTTGTCCAAACAAGATTTTCGTCTTAAACAGAAAgtggatttt
acacagcaaattagcacataggctgcgtttagaccaactggcatttgtaa
tttggcatttgctcatgagggattcgattttaatagctttccCATTGTAT
TTtttgtcatggcatttaaggaatcgtctttttagagtcattactgaaaa
gttgattccctcaagttcaactttgacagatcaaacaatgaaaagcatgg
aatttctcaaaaactgcagtcattgagactgaaactttttgccgtagggc
taggctatggcaaatcttgcaatttttacaatctatagaaagaactgaat
aaaaaacgtgcaaatactttaaaaaatcaaaaatgtcattttttctcttt
gtttttgttcctttgtttgatttgaaatgccagaaaaggggattcctttg
ctcaaaatggcatttcaaatgccaacgaaatgccaacacgctggcatcat
taggcatttgataAACCGAACAATTGTGCGGaaaaatagaattcaaaaga
atactgcaagcaattacaaatgccaggctggtctaaacgcagccatatTC
TTGAAGTTTTGGTAATACCATACATAGAGATATCATTTAATAAAGAGAAA
TCTTTCCTAAGCTGTGTCGTCATCCAttcatttttcctttgttaaaagCA
ATTAGtggtcgtaaaaacagtttctcaaaatctgatgcGTGGAAAAAGAT
TTCATGAAAAGGATACGTTTACACTGTAGTTTTCTCCAAATCaacagatt
ttaatttttgaaaaccattgatatttttcgatgtaCTTTACCTTTTGTTT
AGAAATTTTGGGAACTAAATTTTTgtagtttcatttttcttcatctCAAA
ATTTGAAGCGTGAATAGAAATCTAATCAGAAGAAATAACTAATTTCGTTG
AAATTTCTatgaataaaaatttctaattaaaagtgcgttttcaaatagtt
tttaaGATAGGTAAATATATAAATCGTGCtgaattcaaaaatatattttt
tatttcgattaaAAGGACCGAAGTGCCCTAAATTTCCGCTCCAAAATCTT
CTTATTATGTAAATAATTTTCTAGAATTGAAAAGAATTCAATCAGTCTtg
agaaaatatgcaattaaaatacgatcaaaaaaaaagaattcaattACTAC
TTCGCACGTTCAAAAGAAATCCCATTGGCACTAAGGGACCCCTCACAGGC
GCGCTTCATTTTGAGGATAAACGTTTGATAACTCTCTATTAATTCATATT
TCTATGgtattaggcgagaccaatttgattagttttttacgggcccgacc
gaccctgatattccaaaaatcaaaatcaaaataaaattaattttggtagt
acattttctaaaatttggtagtttttccaaggttatGAGAATttcatgtt
caatttttcaatttatccatgaattcgaccattgtgtgtctttttatttt
ctatttcgcattttcgCCAACAGGAAgtagttttttacttttaagttcat
tttttcaccgaccgaccgaccctcttttttggatAGCTAAATTGGCCTCG
TCTTATGCAGAATTTGGATataatgtttttttgatttgaatcgAGTTTTA
ACAGTTTTGTAAGCCCCATGGcaatttattcaaaattgatTGAAGTAAGA
TTTTTTGCGTGAATCggttaaaaatgttttaatttttttatttgaaaaaa
tgaggcgaaaaattaataataaataaagTCGATTATAGattattcaaaat
aaagaataaaatatCCATGAATACTATTTATGTATTTTATTGAGTAATTT
ATTTTAAGGGTGAAAATATTCGGTGTATCTTATCTTTCTTGATTTCGCTG
ATGAATTGTTCGCaaaataaaatatctaaatGATGGATGACTGatagatt
gactttgatttctcATCTATTGAAACATGACTCTGCATTTGGCAGTATTT
CTGACACAagtaattttcaaatgataagaAAAGCTGGATGGTTTTCGGTT
CCAAAATTGATAGAACCGATATTTAACATCTAGACAGTTTTTTCACTATT
TCCATGGGTTCCAAGGTCAGCTATCCATAAACTGAAGGCAACATAGGAAG
AAGCGGTGATTACAACCAGTTTTAGGCGCTGACACCTTTAGGCTACCTGG
CCACCGCTCCTTAGAGTTCAAATATAATTATGCATTTGGCAGTTTTTTTG
ACACAAGTAATTGTTATCTATGCGCAATGGTACGAAAAAGATCTAACCAA
CCAACCAACAACAACAAGTATTGATACAAAGGATGCTTCAAAACCTGTCC
CAGCAAGATCACCTATCGAGTGTGTTTTGAAATGCAAGAGAAATCTCCAA
GAAAGTTATTTCGTTGAAGAGAAACAACTTtgtttttgctttcaaagtaa
AGAACAAGATTTATTTCCggatgatgaaaatgaaaatttagatgGAGCTT
CGTTCCAGGAGCACAAGGAGCACATGGTAAGCAAAATTTTGTATAGGAGC
AACTTTTAAGAACAACGAgactcaaaaatgccaaaaattgcaaaaataga
tcttatcggagtttttcaTTTCTCTGAAAAAGCGTtccattgtgggattg
tttcgggagtattacaatagaattccctcgaggaattcctaagagatttc
tattgtaatattcccgaaacaatcccacaatgcatcgcttttttagaaaa
attagaaactccgataagatctattgtcaacggacccttagagagaccaa
agcTTACCGTCATAATACCCATCATCTATTTTTGCCAGAGTACCCCCTCC
CCTCGGTCTCGGGCTTGATAGAGGCAGGAAATTGCTGCTCTCAGTCCcct
ggttttaattttttttctttagcaATGTGGAAGTGAAATGAAGAACTGCA
AAGACGTCAAAGAGATTTGTCCATATTGCAAATCAGCAATTTATGAAATG
GAAATTCTTGGTGAAAAAACGAAAGCCTTTTGTGACTTGACTACAGACAG
TGGTAAGATATTTTCGATTTAATTTTTCGTCCAACGAATGTGCCAGCCCA
TAGTGCTTAGTTCACTAATTTAAGCTATCCAAACAAAATATTTGGAAGGT
AACAAAATATATAATAGGTCATTCATTCGATCAAAACACAAGCCCCTAAA
AATGTCGAATCGCAAAAGgttaaagtttttgtttttacataagtgttccc
gtttcatatcagacacatatatctcatatcagggcagtgtctgccttttg
ttatattatgccgatataagcaaaaaaaaattttcccctcccctttctga
ccaatcttactCCACATCCTTGTCAATCTAATgtgaaaaaacttgtaaat
taaaattgatgagtaagcaaccgatatcactcttatttaaaaacaaaaac
tttaaaagaaatgttaagattttttaatcgaacatttttatagGCGGTTG
GCTGCAAATAACAAATATCAAATTCGACGACGCAAACAAAATCGATTCAA
TCTATACAAATCACATAGCTCAGCCATCGTCTATCACTGACCTCCAAAAT
GCACCAAACTCGCAATTCATGTTGGACCCACTTGCCTTACAAAGCCTTTT
CAATGACGAAGGTTACAGCGAGCTAAGAATCAAATGCTATAAACCATGGC
ACGGCAGAACCCTTGACGTCGTTCTATACGGTGAAAAGATACACAAATAT
GTAAATAGCGAAGCGCGGACCCTCGGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056204-exon-scaffold_269-1491911889:294221..294278 | TCONS_00056204-exon-scaffold_269-1491911889:294221..294278 | Clytia hemisphaerica | exon |
| TCONS_00056204-exon-scaffold_269-1510915933:294221..294278 | TCONS_00056204-exon-scaffold_269-1510915933:294221..294278 | Clytia hemisphaerica | exon |
| TCONS_00056204-exon-scaffold_269-1575043694:294221..294278 | TCONS_00056204-exon-scaffold_269-1575043694:294221..294278 | Clytia hemisphaerica | exon |
| TCONS_00056204-exon-scaffold_269-1491911889:302193..302322 | TCONS_00056204-exon-scaffold_269-1491911889:302193..302322 | Clytia hemisphaerica | exon |
| TCONS_00056204-exon-scaffold_269-1510915933:302193..302322 | TCONS_00056204-exon-scaffold_269-1510915933:302193..302322 | Clytia hemisphaerica | exon |
| TCONS_00056204-exon-scaffold_269-1575043694:302193..302322 | TCONS_00056204-exon-scaffold_269-1575043694:302193..302322 | Clytia hemisphaerica | exon |
| TCONS_00056204-exon-scaffold_269-1491911889:302764..303049 | TCONS_00056204-exon-scaffold_269-1491911889:302764..303049 | Clytia hemisphaerica | exon |
| TCONS_00056204-exon-scaffold_269-1510915933:302764..303049 | TCONS_00056204-exon-scaffold_269-1510915933:302764..303049 | Clytia hemisphaerica | exon |
| TCONS_00056204-exon-scaffold_269-1575043694:302764..303049 | TCONS_00056204-exon-scaffold_269-1575043694:302764..303049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:294221..303049 + |
Blast
The following BLAST results are available for this feature:
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