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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056211 ID=TCONS_00056211|Name=TCONS_00056211|organism=Clytia hemisphaerica|type=transcript|length=1785bp TTAGAAACATAACTAAATTAACAATATTTTACTTGCCgctgaaaacatga aaatatatttttttcaaaatgtaattTTCAGAAATGGATCAttgtgaaat ttttgttttgtatttctttgtatttttgaatctAACAAATGCCCTTCAAA TGAACAGTTGCAGCAAGGATGATTTCTACCTACGCAAAAATGTTGGGCGA AATGTCATCTTTCCTGGAGAGATTATTGATGTTGAAAATGTGAGAACATA TCAACAATGCTTCGGATATTGTCAAAGATATGCATGTTCTTTATTCAATT TTGAAGAAGTTGCCGCTGGAAATTTTAAATGCGGTGTTTATCCAGGACCA GAATTCATATCACGGTATTCGCCGAAAACTCGCTTTGGAATAGAACCGGT TCATCGATTTTTCTTCGAGAAAGTACCATGCCAGACAGATGAAAGTTCTG AATATTCATTCAAAGGGACTTTTCTTGAAGCAGAGAATTGTAAAGAAGTT CAAGAAAATGGCGGTGGTGAAACAGGTATATATGAAGTTCGAGTGATTGG TCAACCTGGTCAATCCAGATACATTGTTTGTAACATGGATCTTATGGACG GTGGCtggacgttgtttcaacgtaaTTACGGTCCATCGCACATTAACTTT GGGAAAAGATGGGCAGATTACAAATCAGGTTTTGGTGATCTCAGATATCC ATTTTGGGCAGGGAATGATTTTCTTCATCAACTGACACAGAATGAAGACA CCGAGTTATTGGTAGTCTTGAAAGATGCTGATGGTGATGATCATTACGCA TACTTCACCACGTTCTATattgatgatgaaaatgaaaaatatcgaTTGAC AATCAGTGGTTATCAAGTTGTGTTAACTCCTGCTCTTCCTCAACAAACAG GAGCTGAGCAGTTCATGTACCACAATCAAATGGTCTTTGTAACCTCTGAT AATGCTCCACTCGGTATTGCTTGCGGCACCCAATATAACAATGGGTGGTG GTATAATAATTGTTTTCGAGTTGCTCTAAATGGTGACCCGAATTTTGTTT TGCCGACTGGTGGTACCAACACACCATTAGGTATCATGTGGCGTTTAGAG GTCGGAGGAAATTGGATGATTTTCCGAGAATCAACGATGATGGTAAGAAA GAAATGATGTTGTATGTTACATTGGAGTAAAAACTGTAAATGAACCGTAA AAATACTACATTACATTGGCGAAACGGCAAGACGTCTAATCAGAAGAGTG GATGAAAACACGGGGAAAGACAATAATTCCCACCTAAACAAACACTCCCA AATAAAAGTACACAAACCCGTTTCGCTAgaagattttaaaattattggta gtcattttaaaaatcaagaatattttagaaagaTTGCAGAGGCTATTTAT ATTAAACGTTTTAAACCTACATTGTATGTACAGCATATGTCTATTCCTAT TGAACTTTTTAACTAATTtataactagtcatagctttcactaaatgccca cgcagaagatcatgtcatgcacttataaagctttaaagattaaagcatta aaaataatcaggaataatgggcttttccagttAAAATCCGTACCCCCCAC GTTGAGGATatccattttcaaaattgttaaaCCCCGGGATGTCCAAGCCC TATTTTTCTCCAACCCCTTGGATTTCAAGGTTAAATTTTCCCCATCCTCT AGGACGTCTCTTGTGAAAAGAAATAACAATACCCCCCTGGATGTCCTATA TCCTCAACATGGATAGGGCCTTACCTCTCTTACTT Run BLAST on NCBI protein sequence of TCONS_00056211-protein >TCONS_00056211-protein ID=TCONS_00056211-protein|Name=TCONS_00056211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=357bp
MDHCEIFVLYFFVFLNLTNALQMNSCSKDDFYLRKNVGRNVIFPGEIIDV ENVRTYQQCFGYCQRYACSLFNFEEVAAGNFKCGVYPGPEFISRYSPKTR FGIEPVHRFFFEKVPCQTDESSEYSFKGTFLEAENCKEVQENGGGETGIY EVRVIGQPGQSRYIVCNMDLMDGGWTLFQRNYGPSHINFGKRWADYKSGF GDLRYPFWAGNDFLHQLTQNEDTELLVVLKDADGDDHYAYFTTFYIDDEN EKYRLTISGYQVVLTPALPQQTGAEQFMYHNQMVFVTSDNAPLGIACGTQ YNNGWWYNNCFRVALNGDPNFVLPTGGTNTPLGIMWRLEVGGNWMIFRES TMMVRKK Run BLAST on NCBI transcript from alignment at scaffold_269:280126..283559- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056211 ID=TCONS_00056211|Name=TCONS_00056211|organism=Clytia hemisphaerica|type=transcript|length=3434bp|location=Sequence derived from alignment at scaffold_269:280126..283559- (Clytia hemisphaerica) TTAGAAACATAACTAAATTAACAATATTTTACTTGCCGCTGAAAACATGA
AAATATATTTTTTTCAAAATGTAATTTTCAGAAATGGATCATTGTGAAAT
TTTTGTTTTGTATTTCTTTGTATTTTTGAATCTAACAAATGCCCTTCAAA
TGAACAGTTGCAGCAAGGATGATTTCTACCTACGCAAAAATGTTGGGCGA
AATGTCATCTTTCCTGGAGAGATTATTGATGTTGAAAATGTGAGAACATA
TCAACAATGCTTCGGATATTGTCAAAGATATGCATGTTCTTTATTCAATT
TTGAAGAAGTTGCCGCTGGAAATTTTAAATGCGGTGTTTATCCAGGACCA
GAATTCATATCACGGTATTCGCCGAAAACTCGCTTTGGAATAGAACCGGT
TCATCGATTTTTCTTCGAGAAAGTACCATGCCAGACAGATGAAAGTTCTG
AATATTCATTCAAAGGGACTTTTCTTGAAGCAGAGAATTGTAAAGAAGTT
CAAGAAAATGGCGGTGGTGAAACAGGTAAAATAATAAGCTACTTTATGGA
ATAAGATTTCGTGGATTTGGGTATCATACGCCAAATCTGAAGGCTCTAAA
CTAATTAGAAAAAAAATGCCAAAGACTGTCCAAGGTCCAAGGGTCGCTTC
AGGTATTTAAAACAAAAACTGCGATCGGAATTGTAACTCCCAACCAAGGG
GTATAGTCTTCGGCTTTCCCTCTCCTTCAATCGATGTCTATGTAACTTGA
ATAATTACTAGTCCGCCTTAGAAAAATTGATTTAGGCTGATTTAGGAATC
AACTAACGGACTCGTATAGCCTAGTAAACTGAGCCCGTATTCACAAGGCT
AGGACACCCGGCTTATATGTCTATATAGCATTTTCGGCGCTTTAAAGATT
TTTTCATGTTTACAGATTTTAAATTTGCCTTGGAATACTGTTATTCAGTC
ACAAACTTACCATCACAGATTTATCCTGAATCAAACTAGCTTAGATTTCT
TGGCTAGGACTCATGCTCCTTTATAGAGGTCTGCGATTCAGGCAATCATT
TTTATATTATAGGTATATATGAAGTTCGAGTGATTGGTCAACCTGGTCAA
TCCAGATACATTGTTTGTAACATGGATCTTATGGACGGTGGCTGGACGTT
GTTTCAACGTAATTACGGTCCATCGCACATTAACTTTGGGAAAAGATGGG
CAGATTACAAATCAGGTTTTGGTGATCTCAGATATCCATTTTGGGCAGGT
AATGCAATGTTTTGCTGTATGATTAGATTTTCAGCCAGTTATTCAGAAAC
TCAAATAAAATTCAGATTTTTAAATCGCGTCCGTCCCAAAAAAAATATGC
AGACTTTTAACCTTTTCAAAAATTTCGTAAATGAAGATATGGTGAAGATT
ATTAAAAATGATTTAGTTGATTAAAAAACTTGAATTTATACTTTCCTAAG
TCCTTGACTTCGCTGTTTTTTAGAACTTTTTAACTCTTCTGATCAAAGAA
GGCTAAATTTTGACACCATTTTATGAATATTGTTTTTCAATGTATTAAAC
TGTATACACCCCCTTCTCACAGACCCACTGGAAAAATTGACCAAAATATC
GTCCCCGGTGGAAAATTACCTTCCATTTTTGTCCCCACTGAAAATAATCA
TATAAACCAATCCTCACTGCAAAATGTAATTCTCTTTTCCCATTCCCACT
GAATTTTCTGACTTGAAAACAAGAAATGAAATCGCCAGCCATAAAGAAAA
TGGAAATATCAGTCCGTTGTTTTTATCCCCACTGGCTGAAAAAAATCCTA
TCGGGTCTTTGAGAAAGGGGTGTGTATATGTATCATTTTTGTTTGGAATT
TAGCTTTACGTAATCGAAAAAATCTTTTGCTTGCTTTTCTATGTGGAATT
CTACGTCGATTGGTGAATTATTTGAGAGCGTTTGGAGAATCTTCAACCTC
TGATTATCAAACTTTCGTTGAAACTTTTTTCAATTTATGAAGAGGGCTCG
CCAGCCAACGTAGATTAACTTTCGCGTGAAATACTTAGTGGATTAATTAT
GGCGATTTTCGCGAATTTTAGTCGTTTTTGCGCGAAAATTAGTCCTCGCG
AAATATTTAAAAATCCAAAATTAGCAAAAAACCCTAAGGAAATGGAAGAG
ATTGGGCGATAAAGAGGTAAATTTTGTCCACGCGAAAATTGTAGATTCTC
GATTCGCGAAAAAAATCCCACGCTAAAATTCCAACTGGCACACAACGTTG
TTTAAACATTAATCCTACGTTCACAGCGTCCATTTAACGTTAGATTAACG
TTGAAACAACGTTGTGTGCCAGCTGGGATGAATCCACTTTAGGTAAATCG
TTTTTTTTAGGGAATGATTTTCTTCATCAACTGACACAGAATGAAGACAC
CGAGTTATTGGTAGTCTTGAAAGATGCTGATGGTGATGATCATTACGCAT
ACTTCACCACGTTCTATATTGATGATGAAAATGAAAAATATCGATTGACA
ATCAGTGGTTATCAAGTTGTGTTAACTCCTGCTCTTCCTCAACAAACAGG
AGCTGAGCAGTTCATGTACCACAATCAAATGGTCTTTGTAACCTCTGATA
ATGCTCCACTCGGTATTGCTTGCGGCACCCAATATAACAATGGGTGGTGG
TATAATAATTGTTTTCGAGTTGCTCTAAATGGTGACCCGAATTTTGTTTT
GCCGACTGGTGGTACCAACACACCATTAGGTATCATGTGGCGTTTAGAGG
TCGGAGGAAATTGGATGATTTTCCGAGAATCAACGATGATGGTAAGAAAG
AAATGATGTTGTATGTTACATTGGAGTAAAAACTGTAAATGAACCGTAAA
AATACTACATTACATTGGCGAAACGGCAAGACGTCTAATCAGAAGAGTGG
ATGAAAACACGGGGAAAGACAATAATTCCCACCTAAACAAACACTCCCAA
ATAAAAGTACACAAACCCGTTTCGCTAGAAGATTTTAAAATTATTGGTAG
TCATTTTAAAAATCAAGAATATTTTAGAAAGATTGCAGAGGCTATTTATA
TTAAACGTTTTAAACCTACATTGTATGTACAGCATATGTCTATTCCTATT
GAACTTTTTAACTAATTTATAACTAGTCATAGCTTTCACTAAATGCCCAC
GCAGAAGATCATGTCATGCACTTATAAAGCTTTAAAGATTAAAGCATTAA
AAATAATCAGGAATAATGGGCTTTTCCAGTTAAAATCCGTACCCCCCACG
TTGAGGATATCCATTTTCAAAATTGTTAAACCCCGGGATGTCCAAGCCCT
ATTTTTCTCCAACCCCTTGGATTTCAAGGTTAAATTTTCCCCATCCTCTA
GGACGTCTCTTGTGAAAAGAAATAACAATACCCCCCTGGATGTCCTATAT
CCTCAACATGGATAGGGCCTTACCTCTCTTACTT Coding sequence (CDS) from alignment at scaffold_269:280126..283559- >TCONS_00056211 ID=TCONS_00056211|Name=TCONS_00056211|organism=Clytia hemisphaerica|type=CDS|length=3222bp|location=Sequence derived from alignment at scaffold_269:280126..283559- (Clytia hemisphaerica) GGAATGATTTTCTTCATCAACTGACACAGAATGAAGACACCGAGTTATTG GTAGTCTTGAAAGATGCTGATGGTGATGATCATTACGCATACTTCACCAC GTTCTATATTGATGATGAAAATGAAAAATATCGATTGACAATCAGTGGTT ATCAAGTTGTGTTAACTCCTGCTCTTCCTCAACAAACAGGAGCTGAGCAG TTCATGTACCACAATCAAATGGTCTTTGTAACCTCTGATAATGCTCCACT CGGTATTGCTTGCGGCACCCAATATAACAATGGGTGGTGGTATAATAATT GTTTTCGAGTTGCTCTAAATGGTGACCCGAATTTTGTTTTGCCGACTGGT GGTACCAACACACCATTAGGTATCATGTGGCGTTTAGAGGTCGGAGGAAA TTGGATGATTTTCCGAGAATCAACGATGATGGTAAGAAAGAAATGAGTAT ATATGAAGTTCGAGTGATTGGTCAACCTGGTCAATCCAGATACATTGTTT GTAACATGGATCTTATGGACGGTGGCTGGACGTTGTTTCAACGTAATTAC GGTCCATCGCACATTAACTTTGGGAAAAGATGGGCAGATTACAAATCAGG TTTTGGTGATCTCAGATATCCATTTTGGGCAGATGGATCATTGTGAAATT TTTGTTTTGTATTTCTTTGTATTTTTGAATCTAACAAATGCCCTTCAAAT GAACAGTTGCAGCAAGGATGATTTCTACCTACGCAAAAATGTTGGGCGAA ATGTCATCTTTCCTGGAGAGATTATTGATGTTGAAAATGTGAGAACATAT CAACAATGCTTCGGATATTGTCAAAGATATGCATGTTCTTTATTCAATTT TGAAGAAGTTGCCGCTGGAAATTTTAAATGCGGTGTTTATCCAGGACCAG AATTCATATCACGGTATTCGCCGAAAACTCGCTTTGGAATAGAACCGGTT CATCGATTTTTCTTCGAGAAAGTACCATGCCAGACAGATGAAAGTTCTGA ATATTCATTCAAAGGGACTTTTCTTGAAGCAGAGAATTGTAAAGAAGTTC AAGAAAATGGCGGTGGTGAAACAGGGAATGATTTTCTTCATCAACTGACA CAGAATGAAGACACCGAGTTATTGGTAGTCTTGAAAGATGCTGATGGTGA TGATCATTACGCATACTTCACCACGTTCTATATTGATGATGAAAATGAAA AATATCGATTGACAATCAGTGGTTATCAAGTTGTGTTAACTCCTGCTCTT CCTCAACAAACAGGAGCTGAGCAGTTCATGTACCACAATCAAATGGTCTT TGTAACCTCTGATAATGCTCCACTCGGTATTGCTTGCGGCACCCAATATA ACAATGGGTGGTGGTATAATAATTGTTTTCGAGTTGCTCTAAATGGTGAC CCGAATTTTGTTTTGCCGACTGGTGGTACCAACACACCATTAGGTATCAT GTGGCGTTTAGAGGTCGGAGGAAATTGGATGATTTTCCGAGAATCAACGA TGATGGTAAGAAAGAAATGAGTATATATGAAGTTCGAGTGATTGGTCAAC CTGGTCAATCCAGATACATTGTTTGTAACATGGATCTTATGGACGGTGGC TGGACGTTGTTTCAACGTAATTACGGTCCATCGCACATTAACTTTGGGAA AAGATGGGCAGATTACAAATCAGGTTTTGGTGATCTCAGATATCCATTTT GGGCAGATGGATCATTGTGAAATTTTTGTTTTGTATTTCTTTGTATTTTT GAATCTAACAAATGCCCTTCAAATGAACAGTTGCAGCAAGGATGATTTCT ACCTACGCAAAAATGTTGGGCGAAATGTCATCTTTCCTGGAGAGATTATT GATGTTGAAAATGTGAGAACATATCAACAATGCTTCGGATATTGTCAAAG ATATGCATGTTCTTTATTCAATTTTGAAGAAGTTGCCGCTGGAAATTTTA AATGCGGTGTTTATCCAGGACCAGAATTCATATCACGGTATTCGCCGAAA ACTCGCTTTGGAATAGAACCGGTTCATCGATTTTTCTTCGAGAAAGTACC ATGCCAGACAGATGAAAGTTCTGAATATTCATTCAAAGGGACTTTTCTTG AAGCAGAGAATTGTAAAGAAGTTCAAGAAAATGGCGGTGGTGAAACAGGG AATGATTTTCTTCATCAACTGACACAGAATGAAGACACCGAGTTATTGGT AGTCTTGAAAGATGCTGATGGTGATGATCATTACGCATACTTCACCACGT TCTATATTGATGATGAAAATGAAAAATATCGATTGACAATCAGTGGTTAT CAAGTTGTGTTAACTCCTGCTCTTCCTCAACAAACAGGAGCTGAGCAGTT CATGTACCACAATCAAATGGTCTTTGTAACCTCTGATAATGCTCCACTCG GTATTGCTTGCGGCACCCAATATAACAATGGGTGGTGGTATAATAATTGT TTTCGAGTTGCTCTAAATGGTGACCCGAATTTTGTTTTGCCGACTGGTGG TACCAACACACCATTAGGTATCATGTGGCGTTTAGAGGTCGGAGGAAATT GGATGATTTTCCGAGAATCAACGATGATGGTAAGAAAGAAATGAGTATAT ATGAAGTTCGAGTGATTGGTCAACCTGGTCAATCCAGATACATTGTTTGT AACATGGATCTTATGGACGGTGGCTGGACGTTGTTTCAACGTAATTACGG TCCATCGCACATTAACTTTGGGAAAAGATGGGCAGATTACAAATCAGGTT TTGGTGATCTCAGATATCCATTTTGGGCAGATGGATCATTGTGAAATTTT TGTTTTGTATTTCTTTGTATTTTTGAATCTAACAAATGCCCTTCAAATGA ACAGTTGCAGCAAGGATGATTTCTACCTACGCAAAAATGTTGGGCGAAAT GTCATCTTTCCTGGAGAGATTATTGATGTTGAAAATGTGAGAACATATCA ACAATGCTTCGGATATTGTCAAAGATATGCATGTTCTTTATTCAATTTTG AAGAAGTTGCCGCTGGAAATTTTAAATGCGGTGTTTATCCAGGACCAGAA TTCATATCACGGTATTCGCCGAAAACTCGCTTTGGAATAGAACCGGTTCA TCGATTTTTCTTCGAGAAAGTACCATGCCAGACAGATGAAAGTTCTGAAT ATTCATTCAAAGGGACTTTTCTTGAAGCAGAGAATTGTAAAGAAGTTCAA GAAAATGGCGGTGGTGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056211-exon-scaffold_269-1575043694:283035..283559 | TCONS_00056211-exon-scaffold_269-1575043694:283035..283559 | Clytia hemisphaerica | exon |
TCONS_00056211-exon-scaffold_269-1575043694:282312..282497 | TCONS_00056211-exon-scaffold_269-1575043694:282312..282497 | Clytia hemisphaerica | exon |
TCONS_00056211-exon-scaffold_269-1575043694:280126..281199 | TCONS_00056211-exon-scaffold_269-1575043694:280126..281199 | Clytia hemisphaerica | exon |
TCONS_00056211-exon-scaffold_269-1510915933:283035..283559 | TCONS_00056211-exon-scaffold_269-1510915933:283035..283559 | Clytia hemisphaerica | exon |
TCONS_00056211-exon-scaffold_269-1510915933:282312..282497 | TCONS_00056211-exon-scaffold_269-1510915933:282312..282497 | Clytia hemisphaerica | exon |
TCONS_00056211-exon-scaffold_269-1510915933:280126..281199 | TCONS_00056211-exon-scaffold_269-1510915933:280126..281199 | Clytia hemisphaerica | exon |
TCONS_00056211-exon-scaffold_269-1491911889:283035..283559 | TCONS_00056211-exon-scaffold_269-1491911889:283035..283559 | Clytia hemisphaerica | exon |
TCONS_00056211-exon-scaffold_269-1491911889:282312..282497 | TCONS_00056211-exon-scaffold_269-1491911889:282312..282497 | Clytia hemisphaerica | exon |
TCONS_00056211-exon-scaffold_269-1491911889:280126..281199 | TCONS_00056211-exon-scaffold_269-1491911889:280126..281199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_269 | supercontig | scaffold_269:280126..283559 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00056211 vs. Swiss-Prot (Human)
Match: FGL2 (Fibroleukin OS=Homo sapiens GN=FGL2 PE=1 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 8.386e-28 Identity = 77/218 (35.32%), Postives = 109/218 (50.00%), Query Frame = 3
Query: 540 RVIGQPGQSRY-IVCNMDLMDGGWTLFQRNYGPSHINFGKRWADYKSGFGDLRYPFWAGNDFLHQLTQNEDTELLVVLKDADGDDHYAYFTTFYIDDENEKYRLTISGYQVVLTPALPQQTGAEQFMYHNQMVFVTS-----DNAPLGIACGTQYNNGWWYNNCFRVALNGDPNFVLPTGGTNTPLGIMW-------RLEVGGNWMIFRESTMMVRKK 1154
RV P S + + C+M+ M GGWT+ Q S NF + W DYK+GFG+LR FW GND +H LT++++ L + L+D +G + YA + FY+ +E KYRL + Y AL Y++ + F T+ D P G CG Y++GWW++ C LNG G N GI W GG F+E+ MM+R K
Sbjct: 228 RVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGS-TNFTRTWQDYKAGFGNLRREFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFLKYRLHVGNYNGTAGDALRFNK-----HYNHDLKFFTTPDKDNDRYPSG-NCGLYYSSGWWFDACLSANLNGKYYHQKYRGVRN---GIFWGTWPGVSEAHPGGYKSSFKEAKMMIRPK 435
The following BLAST results are available for this feature:
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