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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056212 ID=TCONS_00056212|Name=TCONS_00056212|organism=Clytia hemisphaerica|type=transcript|length=403bp
CTTGGAGATTTCTCTTGCATTTCAAAACACACTCGATAGGTGATCTTGCT
GGGACAGGTTTTGAAGCATCCTTTGTATCAATACTTGTtgtttttggttg
gttgattagGTTTTTTTCGTACCATTGTGCATAGACCAAAATGATTTGGA
CCGAAAAAACTGCCAAATGCATaattatatttcaattttaaggAATGGTG
GCTAGGTGACCTACAGGAGTCGGCGCCTGAAACGAGGGGTTCCCGGTTGT
AATCCCCACACTCCTTCCTATGTTGCGTTCAGTTTATGGATAGCTGGCCT
TGTAACCCGTGGAAATGGTAGAAAAACTGTCTAGATGTTAAAATATCGAT
TCTATCTATTTAGGAATCAAAAACCATCCATCTTTTCTtatcatttgaat
att Run BLAST on NCBI transcript from alignment at scaffold_269:293751..301671- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056212 ID=TCONS_00056212|Name=TCONS_00056212|organism=Clytia hemisphaerica|type=transcript|length=7921bp|location=Sequence derived from alignment at scaffold_269:293751..301671- (Clytia hemisphaerica)
CTTGGAGATTTCTCTTGCATTTCAAAACACACTCGATAGGTGATCTTGCT
GGGACAGGTTTTGAAGCATCCTTTGTATCAATACTTGTTGTTGTTGGTTG
GTTGGTTAGATCTTTTTCGTACCATTGCGCATAGATAACAATTACTTGTG
TCAAAAAAACTGCCAAATGCATAATTATATTTGAACTCTAAGGAGCGGTG
GCCAGGTAGCCTAAAGGTGTCAGCGCCTAAAACTGGTTGTAATCACCGCT
TCTTCCTATGTTGCCTTCAGTTTATGGATAGCTGACCTTGGAACCCATGG
AAATAGTGAAAAAACTGTCTAGATGTTAAATATCGGTTCTATCAATTTTG
GAACCGAAAACCATCCAGCTTTTCTTATCATTTGAAAATTACTTGTGTCA
GAAATACTGCCAAATGCAGAGTCATGTTTCAATAGATGAGAAATCAAAGT
CAATCTATCAGTCATCCATCATTTAGATATTTTATTTTGCGAACAATTCA
TCAGCGAAATCAAGAAAGATAAGATACACCGAATATTTTCACCCTTAAAA
TAAATTACTCAATAAAATACATAAATAGTATTCATGGATATTTTATTCTT
TATTTTGAATAATCTATAATCGACTTTATTTATTATTAATTTTTCGCCTC
ATTTTTTCAAATAAAAAAATTAAAACATTTTTAACCGATTCACGCAAAAA
ATCTTACTTCAATCAATTTTGAATAAATTGCCATGGGGCTTACAAAACTG
TTAAAACTCGATTCAAATCAAAAAAACATTATATCCAAATTCTGCATAAG
ACGAGGCCAATTTAGCTATCCAAAAAAGAGGGTCGGTCGGTCGGTGAAAA
AATGAACTTAAAAGTAAAAAACTACTTCCTGTTGGCGAAAATGCGAAATA
GAAAATAAAAAGACACACAATGGTCGAATTCATGGATAAATTGAAAAATT
GAACATGAAATTCTCATAACCTTGGAAAAACTACCAAATTTTAGAAAATG
TACTACCAAAATTAATTTTATTTTGATTTTGATTTTTGGAATATCAGGGT
CGGTCGGGCCCGTAAAAAACTAATCAAATTGGTCTCGCCTAATACCATAG
AAATATGAATTAATAGAGAGTTATCAAACGTTTATCCTCAAAATGAAGCG
CGCCTGTGAGGGGTCCCTTAGTGCCAATGGGATTTCTTTTGAACGTGCGA
AGTAGTAATTGAATTCTTTTTTTTTGATCGTATTTTAATTGCATATTTTC
TCAAGACTGATTGAATTCTTTTCAATTCTAGAAAATTATTTACATAATAA
GAAGATTTTGGAGCGGAAATTTAGGGCACTTCGGTCCTTTTAATCGAAAT
AAAAAATATATTTTTGAATTCAGCACGATTTATATATTTACCTATCTTAA
AAACTATTTGAAAACGCACTTTTAATTAGAAATTTTTATTCATAGAAATT
TCAACGAAATTAGTTATTTCTTCTGATTAGATTTCTATTCACGCTTCAAA
TTTTGAGATGAAGAAAAATGAAACTACAAAAATTTAGTTCCCAAAATTTC
TAAACAAAAGGTAAAGTACATCGAAAAATATCAATGGTTTTCAAAAATTA
AAATCTGTTGATTTGGAGAAAACTACAGTGTAAACGTATCCTTTTCATGA
AATCTTTTTCCACGCATCAGATTTTGAGAAACTGTTTTTACGACCACTAA
TTGCTTTTAACAAAGGAAAAATGAATGGATGACGACACAGCTTAGGAAAG
ATTTCTCTTTATTAAATGATATCTCTATGTATGGTATTACCAAAACTTCA
AGAATATGGCTGCGTTTAGACCAGCCTGGCATTTGTAATTGCTTGCAGTA
TTCTTTTGAATTCTATTTTTCCGCACAATTGTTCGGTTTATCAAATGCCT
AATGATGCCAGCGTGTTGGCATTTCGTTGGCATTTGAAATGCCATTTTGA
GCAAAGGAATCCCCTTTTCTGGCATTTCAAATCAAACAAAGGAACAAAAA
CAAAGAGAAAAAATGACATTTTTGATTTTTTAAAGTATTTGCACGTTTTT
TATTCAGTTCTTTCTATAGATTGTAAAAATTGCAAGATTTGCCATAGCCT
AGCCCTACGGCAAAAAGTTTCAGTCTCAATGACTGCAGTTTTTGAGAAAT
TCCATGCTTTTCATTGTTTGATCTGTCAAAGTTGAACTTGAGGGAATCAA
CTTTTCAGTAATGACTCTAAAAAGACGATTCCTTAAATGCCATGACAAAA
AATACAATGGGAAAGCTATTAAAATCGAATCCCTCATGAGCAAATGCCAA
ATTACAAATGCCAGTTGGTCTAAACGCAGCCTATGTGCTAATTTGCTGTG
TAAAATCCACTTTCTGTTTAAGACGAAAATCTTGTTTGGACAACTGACCG
GGGGGGGGGTACTTAGGCAAAAATGGATGATGGGTATGTGCGGACGGTAA
CGGTCGGTTTTTTCACCTTTTAAAGTCTCTCTAAGGGTCGGAAAAATCAG
AAAGTTTTAAATTAGTCTCTCTAAGGGTTGGAAAATTCAGGATGTTTAGG
AAATTTTTTGATTTCCAGAGAAAAAATTGTAATAAAGTCTCTCTAAGGGT
ATGACTTTTTTCAAAAATCGAAAAAAAAAATTCAGAAAGTCTCTCTAAGG
GTCACCTTTTCAGCAAAAATCAGTCTCTCCAAGGGTCGGTTTTCGGAGGT
CCCGTCCGCACATACCCCTCATTCGCCAACCCTAGTACCCCGCGGGGATG
GAAGAAAGAATTCTTAAAAGATGGAGTTAGAGCTGCCAGTAAAAAATAAA
TACAGTTGAGTCTCCATACGGGGAGCAAAATTTTTTTGAGNAAACCCCCC
CCCCCCCTGGGACAACTGACTATGTTATTATTTAACCTAGACGATGCGAT
AGCATCATGTAATATATTATTATGATATTACGATATAGCATAGTTGTATA
TTATAAAAGTTATTATGTTGCGTGGCGGAAAATAGAGACTGTACATTGAG
CCCCTCCGACTATTTTTTGCCCGCACAGACAAAATTTCTATTCGACTGCT
AATTTGCGTGTTTGAGGTTATTCTTTATTATTCGAATTCGTCTTAGACTT
TAGCATAGTCTACAATTAACCCTTTTACAATTAACCCTTTTCAAAAAAAG
GTTTGAGACTGCAAACTTTCCGGTGACGCTGAGCAAAAACGAGACGAAAT
GTCGTCTTGTTGTTAAACAAGAGGTTATTCATGACACTTCCCATTGAAGG
GGAACCGAAATCACAAATATTAAAATGTATTTAACGTGCTTGTTTAACGT
CGAAAGTGTTCAAAAAAGTTTTAGTCTATTTTCTTCACCTCGTTGCAACC
TCATTTCACCACTTTGTGATTATTGTCGTGCCATTTCTTAAGAAGCTCAT
TGAAGCCTCGTGTTCTTAAAAGGGCTAGGGAAAATCGGTCCAACTTTTCT
AACATACCATTTTTGGAATATTATATGAAAGGCTGGATTGGTTTGTGCCA
ATGTAAAATTTTTAAAAAAAAAGAAGAATCATGAATGAAATTTAGCAAAA
ACTTAAACATTGGTATGTGAAATAAAAACCTAATCCAAATGAAGGTGATT
GAAGAAAAGTAATAGTGGAGAAACAATAAATTGCAATTTTTTTTTTTGAT
AAACACACCTACGTACACTTATTTACACAAGTTCATCAAAATACATACAA
AATGGGGAAAAAGTCAAAAGTAAATCCTCAAATATATCAAAAAAACATAC
AAACGCATAATCAGATAGATACACCCTTTCGCTAAATGGTGTTGAAGTTC
GACTTTACACGAGGTTAGATGGCATCACAATGCGATCAGTCAATGCAGCG
ACTTCAGGTATATGACGTCATTCAACCAATGTTTACTCGAACCCAAACCC
TTTTAAAATGCACTTGGCGTTAATAGATGCACTTGGTGTATAGGGTTCAT
AAATGCACTTGGTTCATGGGGTTGATAGATGCTTTCGGTGTATGGGGTTG
AGAGATGCTCTTGGTGTATGGGGTTGAGAGATGCTCTTGGTGTATGGGGT
TCATAGATGCACTTGGTTTATGGAGTTTATAGATGCACTTGGTGTATGGG
GTTCATAGATGCACTTGGTGTATGGGGTTCATAGATGCACTTGGTTTATG
GGGTTCATAGATGCACTTGGTGTATGGGGTTGATAGATGCACTTGGTTTA
TGGGGTTCATAGATGCACTTGGTGTATGGGGTTCATAGATGCACTTGGTT
TACGGGGTTTATAGATACACTTGGTGTATGGGTTGATAGATGCACTTGGT
GTATGGGTTCATAGATGCACTTGGTGTATAGGGTTCATAAATGCACTTGG
TTCATGGGGTTGATAGATGCTTTCGGTGTATGGGGTTGAGAGATGCACTT
GGTGTATGGGGTTCATAGATGCACTTGGTTTATGGGGTTCATAGATGCAC
TTGGTGTATGGGGTTCATAGATGCACTTGGTGTATGGGGTTCATAGATGC
ACTTGGTTTATGGGGTTCATAGATGCACTTGGTTGATGGGGTTCATAGAT
GCACTTGGGAATGGGGTTGATAGATGCACTTGGTTTATGGGGTTCATAGA
TGCACTTGGTGTATGGGGTTCATAGATGCACTTGGTTTACGGGGTTTATA
GATACACTTGGTGTATGGGTTGATAGATGCACTTGGTGTATGGGTTCATA
GATGCACTTGGTGTATAGGGTTCATAAATGCACTTGGTTCATGGGGTTGA
TAGATGCTTTCGGTGTATGGGGTTGAGAGATGCACTTGGTGTATGGGGTT
TATAGATGCACTCGGTGTATTGGGTTTATAGATGCACTCGGTGTATTGGG
TTTATAGATGCACTCGGTGTATGGGGTTTATAGATGTACTCGGTGTATGG
GGTTTATAGATGCACTCGGTGTATGGGATTTATAGATGCACTCGGTGTAT
GGGGTTCATAGATGCACTTGGTGTATGGTATTGATAGATGCATTTGGTGT
ATGGGGTTCATAGATGCATTTGGTGTATGGGGTTCATAGATGCATTTGGT
GTATGGGGTTCATAGATGCACTTGGTGTATGGTATTGATAGATGCATTTG
GTGTACGGGGTTCATAGATGCACTTGGTGTATGGGGTTCATAGATGCATT
TGGTGTATGGGGTTCATAGATGCACTTGGTGTATGGTATTGATAGATGCA
TTTGGTGTACGGGGTTCATAGATGCACTTGGTGTATGGGGTTCATAGATG
CATTTGGTGTATGGGGTTCATAGATGCACTTGGTGTATGGTATTGATAGA
TGCATTTGGTGTACGGGGTTCATAGATGCACTTGGTGTATGGGGTTCATA
GATGCATTTGGTGTATGGGGTTCATAGATGCACTTGATGTATGGGGTTCA
TAGATGCACTTGGTGTATGGGGTTCATAGATGCACTTGGTGTATGGGGTT
CATAGATGCACTATGTGTATGGGGTTCATAGATGCACTTGGTGTATGGGG
TTCATAGATGCACTATGTGTATGGGGTTCATAGATGTGTTTTGTGTTCCT
TAAAGAATAATGTCTTTCAAAAGAGACTAATTTTTATCTTATATAAAAAT
ACCAATAACCAAGATATCTTTGTTGAATGTCATGGTTAATCTCACTGCTA
ACGTCATCGCATTCATACCGAGCGGTAGATTTTAAAATAGTCACGTGACC
GTTTCCCCATATCCAAAGGGGGAATTGATAAAACAAATAATCACCTGTTC
CGATTCTGTAATCAGCACAAGGGGACAGGAACATTGATGAGTTATCACCT
GGTAAAAACCGAACTGCGTCGCATCCTCCGACGGTGAACGCTTCGCTATT
TACATATTTGTGTATCTTTTCACCGTATAGAACGACGTCAAGGGTTCTGC
CGTGCCATGATTTATAGCATTTGATTCTTAGCTCGCTGTAACCTTCGTCA
TTGAAAAGGCTTTGTAAGGCGAGTGGGTCCAACATGAATTGCGAGTTTGG
TGCATTTTGGAGGTCAGCGATAGACGATGGCTGAGCTATGTGATTCGTAT
ATATTGAGTTGACTTTACTTGCGTCGTCGAATTTGATATTCGTTATTTGC
AGCCAGCCGCCTATAAAAATGTTTGATTAAAAGATTTATGGAAAAATTTC
TTTAAAATTTCTTTTAACTTTTTTGTCATTGGACATTTCTTTTGATCTTT
CTATAATAATATCTCGTGTTTTGACGTTCTTTTATATGTTTTGTTGCCTT
CAAAAAAAATAGAAATTTTGTTTGGATAGCTTAAATTAGTGAACTAAGCA
CTATGGGCTGGCACATTCGTTGGACGAAAAATTAAATCAAAAATATTTTA
CCGCCGTCTGTAGNGGCACATTCGGTGGACGAAAGATTAACTCAAAATAT
CTTACCACCGTCTGTAGTCAAGTCACAAAAGGCTTTCGTTTTTTCACCAA
GAATTTCCATTTCATAAATTCCTGATTTGCAATGTGGACAAATCTCTTTG
ACGTCTTTGCAGTTCCTCATTTCACTTCCACATTGCTAAAGAAAGAAAAT
TAAAAGAAAGGGACTAAGAGTACGAATTTCCAGCCTCTATAAAGCCAGAG
GCCAGCCTGGAAATGTTGCACAGTACGCCGGCAGTAATAGCATTTGGCGT
ATTAGCGTAAGGAGCATATATAAAGTAAGATATTGGCGTAAGTCAAAGCT
TTCCGAGACGAGAGGAGAGCTGCCATTGTAACGCCCGATTTTATTACACC
AGGTTTAAGCGCATCAAACTTATATGTACCAGCAATACAAGCTGTTTTTC
TAGCCTTATTAATTATAAAACTATACAATATAGCAAATTTTGAGCAACTT
TTAGGTGTGAGAAGATCCAATATCCCAGGGCTTTCGGGGCGTTTACCCGC
TGAACCCCATCCAATGCTCAGCCCTGGACCCATTTGGGAGACTAACACCG
CCACCCAGACCCCACTCCCCTGACATTTCGCCTGCCAAAGCGGAACTCTT
TTTGATGTAGACCTCAGTTTTAACAAATAACAATTCGTCATGGACTTTGC
ATTGTTTCCACACTGGGCCTGGGGGGAGGGGGTAAAAAATAGATGCTGGG
TATTAGGACGGTAAGGTTTGGTTTCTCTAAGGGTTCGTTGACAATAGATC
TTTTCGGAGTTTTTCATTTTTCTAAAAAAACGATGCTTTGTGGGATTGTT
TTGGGAGTATTACAATAGAAATATCTTTTAGGAATTACTCGAGGGAATTC
TATTTGTAATACTCCCGAAACAATCCCACCAGACAACGCTTTTTTAGAAA
AATAAAGAAATCCGATACAATCTATTGTTGTTATTTTTGGCATTTTTAGT
CTCATTGTTCTTAAAAGTTGTTCCTATAAAAAAATTCGCTTACCATGTGC
TCACTGTGCTCCTGGAACGAAGCTCCATCTAAATTTTCATTTTCGTCATC
CAAAAGTAATTCTTGTTCTTTACTTTGAAAGCAAAGGCATAGTTGTTTCC
TTTCAATGAAATAACCTTTTTGGAGATTTCTCTTGCATTTCAAAACACAT
TCGATAGGTGATCTTGCTGGGACAGGTTTTGAAGCATCCTTTGTATCAAT
ACTTGTTGTTTTTGGTTGGTTGATTAGGTTTTTTTCGTACCATTGTGCAT
AGACCAAAATGATTTGGACCGAAAAAACTGCCAAATGCATAATTATATTT
CAATTTTAAGGAATGGTGGCTAGGTGACCTACAGGAGTCGGCGCCTGAAA
CGAGGGGTTCCCGGTTGTAATCCCCACACTCCTTCCTATGTTGCGTTCAG
TTTATGGATAGCTGGCCTTGTAACCCGTGGAAATGGTAGAAAAACTGTCT
AGATGTTAAAATATCGATTCTATCTATTTAGGAATCAAAAACCATCCATC
TTTTCTTATCATTTGAATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056212-exon-scaffold_269-1575043694:301633..301671 | TCONS_00056212-exon-scaffold_269-1575043694:301633..301671 | Clytia hemisphaerica | exon |
| TCONS_00056212-exon-scaffold_269-1575043694:293751..294114 | TCONS_00056212-exon-scaffold_269-1575043694:293751..294114 | Clytia hemisphaerica | exon |
| TCONS_00056212-exon-scaffold_269-1510915933:301633..301671 | TCONS_00056212-exon-scaffold_269-1510915933:301633..301671 | Clytia hemisphaerica | exon |
| TCONS_00056212-exon-scaffold_269-1510915933:293751..294114 | TCONS_00056212-exon-scaffold_269-1510915933:293751..294114 | Clytia hemisphaerica | exon |
| TCONS_00056212-exon-scaffold_269-1491911889:301633..301671 | TCONS_00056212-exon-scaffold_269-1491911889:301633..301671 | Clytia hemisphaerica | exon |
| TCONS_00056212-exon-scaffold_269-1491911889:293751..294114 | TCONS_00056212-exon-scaffold_269-1491911889:293751..294114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:293751..301671 - |
Blast
The following BLAST results are available for this feature:
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