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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056222 ID=TCONS_00056222|Name=TCONS_00056222|organism=Clytia hemisphaerica|type=transcript|length=883bp
CACCAACCCATCCAGATTTAaagaactttgaaaatgatttgcTGGATTTG
ATCAAAAATATATCCTTCAAGCAGACACACAACGACTTCCAACGCAAATT
ACAAGACAATATCCGCACGATTAATGCTTCAAAAAACGCATTCATACCCG
CTGATAAATCGCGTAACTTCTATGAACTCAGCAAAGCCGAATACGACAAA
CTCTACACggaaaatgttacaaaaacCTACAAAATCGACGAAAATTCTAC
CTATGAATCAATCAACACCGAGGCTAAAGATATAGCAAAGAACCTCGACG
ATAGAGTGGAATGTATGGCAAAGAAACCCGCTTTCATTACTTTAAAAGAT
CACAAAACGGACTTTGAGAACAACTCTAAATGCCGATTGATAAACCCTGC
TAAGTCAGAAATAggaaaaataagtaaaaaactgttagaaaatataaaca
aatccGTCAGAGAAGCGACTGGAGTCAACCAATGGCACAAATCCGAAGAC
ACCATTGAATGGTTCATAAACATCGAATCGAAAAAGAATTGCTTCTTTGT
CCAGTTCGATATTGAAGAATTTTACCCCTCTATAACTAAGGAACTTTTAA
CAAAATCACTCAACTTCGCTAAACGATACATCGATATCCCAGAGGAACAC
GAGCAGATCATACTCCATTCATCACTACTACAATCACTACTCTTCACAGA
TGACAAACCCTGGGTAAAGAAATCTGGCGACCCTGACTTTGACGTGACGA
TGGGTAGTTTCGATAACGCGGAGATATGCGAACTTGTTGGTTTATTTATT
TTGAACACCCTTGGTGACAAATACGGTCGTTCGAAATCTGGTTTATACTG
TGATGATGGTCTCAGTTGTTTTCTACGTTCGTT Run BLAST on NCBI protein sequence of TCONS_00056222-protein >TCONS_00056222-protein ID=TCONS_00056222-protein|Name=TCONS_00056222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=293bp
PTHPDLKNFENDLLDLIKNISFKQTHNDFQRKLQDNIRTINASKNAFIPA
DKSRNFYELSKAEYDKLYTENVTKTYKIDENSTYESINTEAKDIAKNLDD
RVECMAKKPAFITLKDHKTDFENNSKCRLINPAKSEIGKISKKLLENINK
SVREATGVNQWHKSEDTIEWFINIESKKNCFFVQFDIEEFYPSITKELLT
KSLNFAKRYIDIPEEHEQIILHSSLLQSLLFTDDKPWVKKSGDPDFDVTM
GSFDNAEICELVGLFILNTLGDKYGRSKSGLYCDDGLSCFLRS Run BLAST on NCBI transcript from alignment at scaffold_269:13578..14460 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056222 ID=TCONS_00056222|Name=TCONS_00056222|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at scaffold_269:13578..14460 (Clytia hemisphaerica)
AACGAACGTAGAAAACAACTGAGACCATCATCACAGTATAAACCAGATTT
CGAACGACCGTATTTGTCACCAAGGGTGTTCAAAATAAATAAACCAACAA
GTTCGCATATCTCCGCGTTATCGAAACTACCCATCGTCACGTCAAAGTCA
GGGTCGCCAGATTTCTTTACCCAGGGTTTGTCATCTGTGAAGAGTAGTGA
TTGTAGTAGTGATGAATGGAGTATGATCTGCTCGTGTTCCTCTGGGATAT
CGATGTATCGTTTAGCGAAGTTGAGTGATTTTGTTAAAAGTTCCTTAGTT
ATAGAGGGGTAAAATTCTTCAATATCGAACTGGACAAAGAAGCAATTCTT
TTTCGATTCGATGTTTATGAACCATTCAATGGTGTCTTCGGATTTGTGCC
ATTGGTTGACTCCAGTCGCTTCTCTGACggatttgtttatattttctaac
agttttttacttatttttccTATTTCTGACTTAGCAGGGTTTATCAATCG
GCATTTAGAGTTGTTCTCAAAGTCCGTTTTGTGATCTTTTAAAGTAATGA
AAGCGGGTTTCTTTGCCATACATTCCACTCTATCGTCGAGGTTCTTTGCT
ATATCTTTAGCCTCGGTGTTGATTGATTCATAGGTAGAATTTTCGTCGAT
TTTGTAGgtttttgtaacattttccGTGTAGAGTTTGTCGTATTCGGCTT
TGCTGAGTTCATAGAAGTTACGCGATTTATCAGCGGGTATGAATGCGTTT
TTTGAAGCATTAATCGTGCGGATATTGTCTTGTAATTTGCGTTGGAAGTC
GTTGTGTGTCTGCTTGAAGGATATATTTTTGATCAAATCCAgcaaatcat
tttcaaagttcttTAAATCTGGATGGGTTGGTG Coding sequence (CDS) from alignment at scaffold_269:13578..14460 >TCONS_00056222 ID=TCONS_00056222|Name=TCONS_00056222|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_269:13578..14460 (Clytia hemisphaerica)
CGAACGTAGAAAACAACTGAGACCATCATCACAGTATAAACCAGATTTCG
AACGACCGTATTTGTCACCAAGGGTGTTCAAAATAAATAAACCAACAAGT
TCGCATATCTCCGCGTTATCGAAACTACCCATCGTCACGTCAAAGTCAGG
GTCGCCAGATTTCTTTACCCAGGGTTTGTCATCTGTGAAGAGTAGTGATT
GTAGTAGTGATGAATGGAGTATGATCTGCTCGTGTTCCTCTGGGATATCG
ATGTATCGTTTAGCGAAGTTGAGTGATTTTGTTAAAAGTTCCTTAGTTAT
AGAGGGGTAAAATTCTTCAATATCGAACTGGACAAAGAAGCAATTCTTTT
TCGATTCGATGTTTATGAACCATTCAATGGTGTCTTCGGATTTGTGCCAT
TGGTTGACTCCAGTCGCTTCTCTGACggatttgtttatattttctaacag
ttttttacttatttttccTATTTCTGACTTAGCAGGGTTTATCAATCGGC
ATTTAGAGTTGTTCTCAAAGTCCGTTTTGTGATCTTTTAAAGTAATGAAA
GCGGGTTTCTTTGCCATACATTCCACTCTATCGTCGAGGTTCTTTGCTAT
ATCTTTAGCCTCGGTGTTGATTGATTCATAGGTAGAATTTTCGTCGATTT
TGTAGgtttttgtaacattttccGTGTAGAGTTTGTCGTATTCGGCTTTG
CTGAGTTCATAGAAGTTACGCGATTTATCAGCGGGTATGAATGCGTTTTT
TGAAGCATTAATCGTGCGGATATTGTCTTGTAATTTGCGTTGGAAGTCGT
TGTGTGTCTGCTTGAAGGATATATTTTTGATCAAATCCAgcaaatcattt
tcaaagttcttTAAATCTGGATGGGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056222-exon-scaffold_269-1491911889:13578..14460 | TCONS_00056222-exon-scaffold_269-1491911889:13578..14460 | Clytia hemisphaerica | exon |
| TCONS_00056222-exon-scaffold_269-1510915933:13578..14460 | TCONS_00056222-exon-scaffold_269-1510915933:13578..14460 | Clytia hemisphaerica | exon |
| TCONS_00056222-exon-scaffold_269-1575043694:13578..14460 | TCONS_00056222-exon-scaffold_269-1575043694:13578..14460 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_269 | supercontig | scaffold_269:13578..14460 . |
Blast
The following BLAST results are available for this feature:
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