TCONS_00056242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056242
Unique NameTCONS_00056242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056242 ID=TCONS_00056242|Name=TCONS_00056242|organism=Clytia hemisphaerica|type=transcript|length=226bp
AAGGGACGAACACGTAACTATACACACAATACGACACTATACAATAAAAT
ACACAACTCTCTAGACACATAATAATAAACAATACACATGGGACTAATAC
AAATTATATAGTAATCATTTATATTTCACTACGAAAGTCCTATCAAATAA
TAAATCTAAGAACAAAGGAAACGATGAAAACAAACGTAAAACTAAAAGAC
AAATTAGCTGCATTATGGCAGTTACA
Run BLAST on NCBI

transcript from alignment at scaffold_269:287693..287918

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056242 ID=TCONS_00056242|Name=TCONS_00056242|organism=Clytia hemisphaerica|type=transcript|length=226bp|location=Sequence derived from alignment at scaffold_269:287693..287918 (Clytia hemisphaerica)
TGTAACTGCCATAATGCAGCTAATTTGTCTTTTAGTTTTACGTTTGTTTT
CATCGTTTCCTTTGTTCTTAGATTTATTATTTGATAGGACTTTCGTAGTG
AAATATAAATGATTACTATATAATTTGTATTAGTCCCATGTGTATTGTTT
ATTATTATGTGTCTAGAGAGTTGTGTATTTTATTGTATAGTGTCGTATTG
TGTGTATAGTTACGTGTTCGTCCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035423XLOC_035423Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056242-exon-scaffold_269-1491911889:287693..287918TCONS_00056242-exon-scaffold_269-1491911889:287693..287918Clytia hemisphaericaexon
TCONS_00056242-exon-scaffold_269-1510915933:287693..287918TCONS_00056242-exon-scaffold_269-1510915933:287693..287918Clytia hemisphaericaexon
TCONS_00056242-exon-scaffold_269-1575043694:287693..287918TCONS_00056242-exon-scaffold_269-1575043694:287693..287918Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_269supercontigscaffold_269:287693..287918 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.09779	0	1.24704	0	0	0	1.35498	0	0	0	0	0	0	0	0	0	0.866201	0	0	0	0	1.29077	1.1735	0	0	1.54364	0	0	2.54609
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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