TCONS_00056277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056277
Unique NameTCONS_00056277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056277 ID=TCONS_00056277|Name=TCONS_00056277|organism=Clytia hemisphaerica|type=transcript|length=520bp
TAGAAACTGTCGTTCTAGGAGACCAAATATTGGTCATGGGCGTGATTTTT
GGACCCATAATTCCCAAGGGAGACCCGATCAATCCAATTCTTACGATGTT
GAACCTAGGAACTCAAGGACGGGATCTTCACCACGAGACAAGGGTCAACT
AAACCCCAGCAGTTTCCCTGTTAATCAACCAGAATATTATAGATACCAAA
AGGGTAATCAATCAGTTTCGTTCAGCCAGCCAACTTACATCAATCCCGGA
GTCAATGTGGTAGCCTCAAAGAAGAAAATACCTAAGATACCCAAGCCTAA
AGGGACTCCAATTTTGAAGCCGAAAGTTAATGTTGGGGGACCTAGCCCTT
TAGTGTACGTAAATGGAAAAGTATTCAACATGGACTGTAAATTCCTTATT
GACACTGGTGCGACAGTGTCCTGCATCGATAAAGATTTTCTTGCCAACGT
CTGCCCAATTAATTATCCTAAACAAATGCCTTCTTTTCATTCAGTTCAAA
CATTTGCGGGCCAAGCTAGC
Run BLAST on NCBI

protein sequence of TCONS_00056277-protein

>TCONS_00056277-protein ID=TCONS_00056277-protein|Name=TCONS_00056277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
RNCRSRRPNIGHGRDFWTHNSQGRPDQSNSYDVEPRNSRTGSSPRDKGQL
NPSSFPVNQPEYYRYQKGNQSVSFSQPTYINPGVNVVASKKKIPKIPKPK
GTPILKPKVNVGGPSPLVYVNGKVFNMDCKFLIDTGATVSCIDKDFLANV
CPINYPKQMPSFHSVQTFAGQAS
Run BLAST on NCBI

transcript from alignment at scaffold_27:88582..89101

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056277 ID=TCONS_00056277|Name=TCONS_00056277|organism=Clytia hemisphaerica|type=transcript|length=520bp|location=Sequence derived from alignment at scaffold_27:88582..89101 (Clytia hemisphaerica)
GCTAGCTTGGCCCGCAAATGTTTGAACTGAATGAAAAGAAGGCATTTGTT
TAGGATAATTAATTGGGCAGACGTTGGCAAGAAAATCTTTATCGATGCAG
GACACTGTCGCACCAGTGTCAATAAGGAATTTACAGTCCATGTTGAATAC
TTTTCCATTTACGTACACTAAAGGGCTAGGTCCCCCAACATTAACTTTCG
GCTTCAAAATTGGAGTCCCTTTAGGCTTGGGTATCTTAGGTATTTTCTTC
TTTGAGGCTACCACATTGACTCCGGGATTGATGTAAGTTGGCTGGCTGAA
CGAAACTGATTGATTACCCTTTTGGTATCTATAATATTCTGGTTGATTAA
CAGGGAAACTGCTGGGGTTTAGTTGACCCTTGTCTCGTGGTGAAGATCCC
GTCCTTGAGTTCCTAGGTTCAACATCGTAAGAATTGGATTGATCGGGTCT
CCCTTGGGAATTATGGGTCCAAAAATCACGCCCATGACCAATATTTGGTC
TCCTAGAACGACAGTTTCTA

Coding sequence (CDS) from alignment at scaffold_27:88582..89101

>TCONS_00056277 ID=TCONS_00056277|Name=TCONS_00056277|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_27:88582..89101 (Clytia hemisphaerica)
GCTAGCTTGGCCCGCAAATGTTTGAACTGAATGAAAAGAAGGCATTTGTT
TAGGATAATTAATTGGGCAGACGTTGGCAAGAAAATCTTTATCGATGCAG
GACACTGTCGCACCAGTGTCAATAAGGAATTTACAGTCCATGTTGAATAC
TTTTCCATTTACGTACACTAAAGGGCTAGGTCCCCCAACATTAACTTTCG
GCTTCAAAATTGGAGTCCCTTTAGGCTTGGGTATCTTAGGTATTTTCTTC
TTTGAGGCTACCACATTGACTCCGGGATTGATGTAAGTTGGCTGGCTGAA
CGAAACTGATTGATTACCCTTTTGGTATCTATAATATTCTGGTTGATTAA
CAGGGAAACTGCTGGGGTTTAGTTGACCCTTGTCTCGTGGTGAAGATCCC
GTCCTTGAGTTCCTAGGTTCAACATCGTAAGAATTGGATTGATCGGGTCT
CCCTTGGGAATTATGGGTCCAAAAATCACGCCCATGACCAATATTTGGTC
TCCTAGAACGACAGTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035451XLOC_035451Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056277-exon-scaffold_27-1491911889:88582..89101TCONS_00056277-exon-scaffold_27-1491911889:88582..89101Clytia hemisphaericaexon
TCONS_00056277-exon-scaffold_27-1510915933:88582..89101TCONS_00056277-exon-scaffold_27-1510915933:88582..89101Clytia hemisphaericaexon
TCONS_00056277-exon-scaffold_27-1575043694:88582..89101TCONS_00056277-exon-scaffold_27-1575043694:88582..89101Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056277-proteinTCONS_00056277-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_27supercontigscaffold_27:88582..89101 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.228153	0.222485	0	0	1.38454	0.48626	1.02664	1.09843	0.28839	0.714435	0	0.759742	0.151737	0.315161	0.842092	0.834179	0.599457	0.877748	0.485063	2.03033	0.220591	0.161395	0.130798	0.475656	0	0	0.625685	0.333874	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR021109Peptidase_aspartic_dom
IPR001969Aspartic_peptidase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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