TCONS_00056284 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056284
Unique NameTCONS_00056284
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1686

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056284 ID=TCONS_00056284|Name=TCONS_00056284|organism=Clytia hemisphaerica|type=transcript|length=1686bp
TTTCAGGGAAGAATTTAGAAAACAAATATATCCACTCAATCATGAATTCT
TTAACAATCACACTCCAAATTATTTTCTTACTCCAAATTTTCACCGAAAC
ATCCTCTTCGTCCTTCGAATGTACAAACCGATTCGAATATCGCCACATGT
TGAAATCAAAAGTTCCACAATGGGGAAATTGTACTTACATAGTGAATCAT
TTTCCCATGTGTAAACCAGAGGTGGAAGTATGGTACCGCCATTTACCACC
CTACGTAGACAAGCAGAACGAATCACAAGTACATGGGCTGATACCAGAGA
TGTTGCGTCAGGTTTACGAAACATGTTGTATGGGTTGTACCAAAATCAAC
TTCAAGaattctgatgacgtcatcgatatTTTGTTCAAACCAAATCTCAC
ATTGGGAATGCCCTTTGAATCTGCACTAGGTAGTAAGAAGATTTCTGGCA
AACATTACGTCAACTTTCTTCAATCACACAACACAGTCTTCTTAGCGAGA
GAAATGCAAAATCTAAGTATCgaattatcgaaaaatttgttcctatCCGT
AATCAAGACGTGGCCACTTTTACTGATCGCGTTTCTAATGGCTGTCATTG
CTGGTTGCATTGTATGGTTTTTGGACATGTGGTTTAACAAAGACGAATTT
CCATCACATTTCCCGAGAGGCCCTTTTGAAGGATTTTGGTGGGCCTTTGT
TTCCATGACTACCGTCGGATACGGTGACCGTGCACCGAAATCGATCGTAG
CACGTTTCTTTGCAGTGATTTGGATTTTGTTTGGTATCACGATATTCTCG
ATGTACACAGCCTCATTGACGACTGCACTCAGTAAATCTGTTGATGACCT
TATCATACCTACAATGGCTGGCAAGAAGATTGGTGTGTTGGCAACAACAG
CTCTTGGCAAATcagccgccattatggaaggtGCTGACATCATCACATTT
CCAACTATCGAACGGTTGATAGATGCTTTAAAACACGACGATGTTGAAGC
CATCGCAATGGACGAATATTTAGCGGAATATATGTTAACGCATTTCGAAA
GCCGCGTCTCTAAAATACGTAAACATCACGGCTTGCAAATTGACGGCAAT
TCCTACGGCGTCGTCACGGATGACGCCGGCATGAAAGAAATGTTGGACTC
GTTTTTCCAAACAAACGAAGATAATCGAGAAACAATGATACATGAGATCA
TGAAAGAAAATTACATGAAATTCAGCAAACTTCAAAAGAATAAGATCGAT
TCTCAAAACATCCATAGTGCCGATTCCCCGTTGTTTCTCATCACCGTGGT
AACGCTTGTATTGGTTGGCATAGCAACCATCGTCCTTGGTTTCTTCTGCA
AATGGTTTGTAAAACACCATCATCAACACGTTCCAGATTTCATCAAAAGT
CGAATGGTTTACCGGAAGGAGATGTTCAACCCAGATATGGAAGCTCTGAA
TAAAGTAGATTTAGATAACAATAGTATCGAGACAACTACAGACTCCATCG
AGATGGGGAAACTAGCCAAAGATGTCAAcgatctgaaaattcaattcgaT
AAATTACAAAAGCGTAGATAATTGGATGAACTATGTATTTTAATTGTTTG
CAACCTTTTTTACCTTTAATAATTGTAAAATAACTAAAAAACTTTTGTAT
ATAATGATTTCGTTAATTCTAACGTGAAAAACTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_271:759..5830+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056284 ID=TCONS_00056284|Name=TCONS_00056284|organism=Clytia hemisphaerica|type=transcript|length=5072bp|location=Sequence derived from alignment at scaffold_271:759..5830+ (Clytia hemisphaerica)
TTTCAGGGAAGAATTTAGAAAACAAATATATCCACTCAATCATGAATTCT
TTAACAATCACACTCCAAATTATTTTCTTACTCCAAATTTTCACCGAAAC
ATCCTCTTCGTCCTTCGAATGTACAAACCGATTCGAATATCGCCACATGT
TGAAATCAAAAGTTCCACAATGGGGAAATTGTACTTACATAGTGAATCAT
TTTCCCATGTGTAAACCAGAGGTGGAAGTATGGTACCGCCATTTACCACC
CTACGTAGACAAGCAGAACGAATCACAAGTACATGGGCTGATACCAGGTA
AATTTGATTTCAATAAGGTCGCGTTTGTTATATTTTCGAAGTTGAAAACA
TAACGTCAGTCATGCGCGACTTGATTTTTTACCAACGATACCATATTTAA
TAATTTAAGATTTAATTCTGGGTTTGTATCGACCGACTAGTTTCAACTCC
AGaccattgattttttttagtctccttcattttcaaccaatctaagcctt
tgattgatttttgatCAGGTTTTTGATCACTTTTTTGAACGTGAAGCATC
ATTTTATCATACTCACATATTCGGACACACCCCTTACAATGGTAAAATCA
ATCTTTGTTTTTCCACAGAGATGTTGCGTCAGGTTTACGAAACATGTTGT
ATGGGTTGTACCAAAATCAACTTCAAGaattctgatgacgtcatcgatat
TTTGTTCAAACCAAATCTCACATTGGGAATGCCCTTTGAATCTGCACTAG
GTTTGTATATTGTGTACAGTTGATGTTCTCAGATTCCATTCTCAAAGGGA
ATATAGGATTCCTTCGAATAGGGGAGCGTATCGAATGGCAGAGCGTCTTT
TATGAGAGTTGCTCGCTGAAggtggctttcaatattatcaattaATGGAA
CGTTATCGAATAGGTGAACGTCAAATTAGAGTGTGCCAACTGTAGTATGA
ATTAAGTTTTGGTTTACGCCAATTTTCACCAGATTTGAAGTAGAAAGCTT
ACCAAAAAAactcataggaatcttttgaacGAGAATAAAAGTTCACACAA
ACTAACAACGAGTCCTTGTTTTCAATAATACATAACTAAAGATGAAAAAG
GACTACTTATTTATTCGGAATAGCAAGCTGATTTTCAACGCACGCTTCAT
TGCGAGCTTCAAAAGGCCTGATTAAGGATGGTAAAAATTCTTCCATAGGT
AGTAAGAAGATTTCTGGCAAACATTACGTCAACTTTCTTCAATCACACAA
CACAGTCTTCTTAGCGAGAGAAATGCAAAATCTAAGTATCgaattatcga
aaaatttgttcctatCCGTAATCAAGACGTGGCCACTTTTACTGATCGCG
TTTCTAATGGCTGTCATTGCTGGTTGCATTGTATGGTTTTTGGTAAGTGT
GACCATGAATTTGTAGAAATAGACTCACAAAGAAATATATTTATATCTAA
GTTTTTTGACATTAACATTTCAAGCCAAGAGTGTGAGGCTAGCTTGTAGC
ATTAAGTGTATATATTAAATGATTGTAAAACAGTATGATAATCAAAATTG
TGTTAAGATCTTCAGGCTTAAGCCTAGATATGTTTTTTGAATCGGACTCA
TTGTCTCATTCTTGCTTCTTTTCCCATTCTCAGGACATGTGGTTTAACAA
AGACGAATTTCCATCACATTTCCCGAGAGGCCCTTTTGAAGGATTTTGGT
GGGCCTTTGTTTCCATGACTACCGTCGGGTGAGTCTACCAGTATTTAAAA
GCCAGAATTATATTTATTTAAGGTCAGAGGTTTATGCGCCGAAATGGTAG
CTTGttctttaaatttcaaaatggctgaaaacattTCGACTGTGAGGTCC
TGAATTTGATTGACATCATTATCgtcaaaaattaacaaagagGTGTACGA
GTTTGAGTCAAAGCTTTTCAAACGTTATATTACGACTAAAAATCCACAAT
ATTCATTTGATAACTCTTCTTCCAGATACGGTGACCGTGCACCGAAATCG
ATCGTAGCACGTTTCTTTGCAGTGATTTGGATTTTGTTTGGTATCACGAT
ATTCTCGATGTACACAGCCTCATTGACGACTGCACTCAGTAAATCTGTTG
ATGACCTTATCATACCTACAATGGCTGGCAAGAAGGTAAACTTTCGCGAC
TCTTTTCAAGATGCAATTTTGTGGCTACAAAGTTTAATTGACCAAATCAC
ACACGAGTTGAACCACTTTTCATGATACTATAGATATTCTTTATTACATT
TTCCAGCTTTGAATGTCTGTTGTATCACATTTTTTCGTGCATTATTATAC
TTTGTGGGCGTAGTGGTATAGCGGTAATCATCTTTGCCTTTGGTTCAGGA
GGTCAAACTCGAATCCCACTGTGATACTACGGTTCACTTGGCTAGTTGTA
GAACTTCACCCGGGCCAACCCATACCAATTCTGAGGTAATATGTCGTGCA
CAGTTGCGTGGTGACACTCCTCTTGTTCTACACGCGTGACGAGCACTATG
CTCTCCCAAGTAGTTCGAGTGTCTTCACTTTACAGGGCAGGTGACTAAGT
GTAATTGAAATCGAGAGGAATTCCTACCTTGTAAGTAGTAGGACCTGTTC
CCCgatgaggggggggggtagtatAAAATCACCATATTATTGTGTTTTAA
GTAGTGCATTAGTAACCCCTCtatcaatttttgtttcaaatacTCTATAA
GGAGTACTCCGAATGACAAAGATTTCCTTCACTCATAGATTGGTGTGTTG
GCAACAACAGCTCTTGGCAAATcagccgccattatggaaggtGCTGACAT
CATCACATTTCCAACTATCGAACGGTTGATAGATGCTTTAAAACACGACG
ATGTTGAAGGTATGATGTTCTGATGTTCATCAAAAGGTTACCGAGACATA
CAGTATTAGAGCTTTTGAGAATGACAGTGGTATAAGCAAGGGTTTGTCTG
TgatggaaaatggattttacacagcaaataaGCACTTATTGCTTAAGTTT
TGAATTGAATGATGCAAAATTTTATACTTCTCTTAGACGAAATTCCGTCA
GAGACATCTAACATTGATTTTCGGAATGATTCCTTTAAGTTCTAATATAT
actaaccactgacctttatatatccctggaccaagctatatcttccatct
ttgatcgaagtttttttgaaattggtacccgagaagatgccattgcaatg
ttaaaaattaatgtcTAACGGCGccacatcatcaaaagtattcgaggaaa
agtagacctagcgctttcgatgcatttacactgctattgagtagtgccgc
cattagggtaccacttttcaaaaaactacgatcaaaaattttgcttggcc
gggattgagaaacttggtccaggaaGGGTATATCAAGGTCAGTGATATCA
ACCCTTATAATAAATGGCCAAAAACGTAAAAGCAATAAACAACAATAGCT
CTGATCATAgaatgtgaaaaaattcttattttgcaGCCATCGCAATGGAC
GAATATTTAGCGGAATATATGTTAACGCATTTCGAAAGCCGCGTCTCTAA
AATACGTAAACATCACGGCTTGCAAATTGACGGCAATTCCTACGGCGTCG
TCACGGATGACGCCGGCATGAAAGAAATGTTGGACTCGTTTTTCCAAACA
AACGAAGATAATCGAGAAACAATGATACATGAGATCATGAAAGAAAATTA
CGTAAGTACTCGTTTTACGAGAGGTCAATCGAATTAAATCGAATTGAATC
GAATCTATCGAATAACAGAAATTCGACTATTACAGTTATTTTGGACCAAT
TTTCTTCTTAGAATACCTCCCTACCAAGATTCAATGTGTTAGTTTGAATT
GAAAATATTCTACAAATCAAAGAGAGTTAATTATGTATAGCATAACAAAA
CTATCATACCTTATTCTACCTTCAGATGAAATTCAGCAAACTTCAAAAGA
ATAAGATCGATTCTCAAAACATCCATAGTGCCGATTCCCCGTTGTTTCTC
ATCACCGTGGTAACGCTTGTATTGGTTGGCATAGCAACCATCGTCCTTGG
TTTCTTCTGCAAATGGTTTGTAAAACACCATCATCAACACGTTCCAGATT
TCATCAAAAGTCGAATGGTTTACCGGAAGGAGATGTTCAACCCAGATATG
GAAGCTCTGAATAAAGTAGATTTAGATAACAATAGTAAGTACATTAATCG
GTCCTAATGCtagactgggttcgagttatgTTAAGAGTAATAAACTGTCA
ATATTGCAGCATTCCTGGCTTAAATTCATGAGTACATTATGTGGCAGATT
GTCCCAGTTAgttctgtttttgtttcctATTTTGGCGTTCTTGACTTTTA
ACGCGACTCAAGCCTTATCTACCCTTGCACAAAAAGCGGGTTTGTCCCGA
TGTACTAATAGCTTCAGACTTCTATATAAAGCGGTGAATCTGTCAATAGT
CGCTTGACGTCAGGTTATCCTGTAACTTCAAACCCAAACCCTTACTTCAA
AGCACAAAGCATAAATTCATCAGATTAAGTCATTTCAATTTCTTTGTAAA
ATGACTGACTCATTCATCCTTCTTATATATATCTTTGAGTGCATTGATAG
TGAAATTTTGTACGCTTTTTGTTGTATCGATCAGGTGTCGGTGATTCTCA
ACATATAAAGCATGAAGTATCTTTCTCTTAGGAAATGGGTTTTTAGCAAT
GGTTCTACATTATAACTTTGCAGGTATCCTAACTATCAaggctttcaaaa
ttttcaagaaatttttcttatagAATATGAGCTTTTTGGAAACCAATACA
GGataagattttaaaaagataaaaatcgattttctaAAACGTTTTTGGTT
TTGCTTCAGGTATCGAGACAACTACAGACTCCATCGAGATGGGGAAACTA
GCCAAAGATGTCAAcgatctgaaaattcaattcgaTAAATTACAAAAGCG
TAGATAATTGGATGAACTATGTATTTTAATTGTTTGCAACCTTTTTTACC
TTTAATAATTGTAAAATAACTAAAAAACTTTTGTATATAATGATTTCGTT
AATTCTAACGTGAAAAACTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035458XLOC_035458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056284-exon-scaffold_271-1491911889:759..1055TCONS_00056284-exon-scaffold_271-1491911889:759..1055Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:759..1055TCONS_00056284-exon-scaffold_271-1510915933:759..1055Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:759..1055TCONS_00056284-exon-scaffold_271-1575043694:759..1055Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1491911889:1377..1508TCONS_00056284-exon-scaffold_271-1491911889:1377..1508Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:1377..1508TCONS_00056284-exon-scaffold_271-1510915933:1377..1508Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:1377..1508TCONS_00056284-exon-scaffold_271-1575043694:1377..1508Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1491911889:1957..2150TCONS_00056284-exon-scaffold_271-1491911889:1957..2150Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:1957..2150TCONS_00056284-exon-scaffold_271-1510915933:1957..2150Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:1957..2150TCONS_00056284-exon-scaffold_271-1575043694:1957..2150Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1491911889:2392..2486TCONS_00056284-exon-scaffold_271-1491911889:2392..2486Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:2392..2486TCONS_00056284-exon-scaffold_271-1510915933:2392..2486Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:2392..2486TCONS_00056284-exon-scaffold_271-1575043694:2392..2486Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1491911889:2734..2893TCONS_00056284-exon-scaffold_271-1491911889:2734..2893Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:2734..2893TCONS_00056284-exon-scaffold_271-1510915933:2734..2893Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:2734..2893TCONS_00056284-exon-scaffold_271-1575043694:2734..2893Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1491911889:3497..3617TCONS_00056284-exon-scaffold_271-1491911889:3497..3617Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:3497..3617TCONS_00056284-exon-scaffold_271-1510915933:3497..3617Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:3497..3617TCONS_00056284-exon-scaffold_271-1575043694:3497..3617Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1491911889:4245..4459TCONS_00056284-exon-scaffold_271-1491911889:4245..4459Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:4245..4459TCONS_00056284-exon-scaffold_271-1510915933:4245..4459Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:4245..4459TCONS_00056284-exon-scaffold_271-1575043694:4245..4459Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1491911889:4684..4942TCONS_00056284-exon-scaffold_271-1491911889:4684..4942Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:4684..4942TCONS_00056284-exon-scaffold_271-1510915933:4684..4942Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:4684..4942TCONS_00056284-exon-scaffold_271-1575043694:4684..4942Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1491911889:5618..5830TCONS_00056284-exon-scaffold_271-1491911889:5618..5830Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1510915933:5618..5830TCONS_00056284-exon-scaffold_271-1510915933:5618..5830Clytia hemisphaericaexon
TCONS_00056284-exon-scaffold_271-1575043694:5618..5830TCONS_00056284-exon-scaffold_271-1575043694:5618..5830Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_271supercontigscaffold_271:759..5830 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.854128	1.11399	1.52302	1.80933	98.1826	82.0188	43.9728	32.3523	13.0854	18.9936	1.72657	16.3567	4.15351	2.70421	0.518298	0.556213	4.36794	2.84841	9.27182	8.74354	10.6686	11.1136	11.7357	9.23416	2.24367	2.23259	0.592855	0.59756	0.613191	1.19516
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056284 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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