TCONS_00056288 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056288
Unique NameTCONS_00056288
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056288 ID=TCONS_00056288|Name=TCONS_00056288|organism=Clytia hemisphaerica|type=transcript|length=811bp
TTTATCCTTCGGTTCCGTAGATGTGAGATTGCGATCAAACAACGAAGCCA
TAATCGCTGTCTCTCATCGTAAGAGGGCGAAGAATTTAGTTAAAGCATTT
GCGATGAACAAATTTTACATCGTTGAAGAATATGACTGGTGGAAACATTC
CAAAGAAGCTTCCAAACTCAGATTGAGTGGAAGTGTTACAGTGACCATAT
TGTCGTTAGCAACAGTTGTGTATCTATGGAAACGATATCAATAAAAAGGA
GTCAGAGGCTTGGATCTGATCGTTTTGCCGGGGGAGACCAACAACGTTTG
TTAATCGCCTTGTCTTAGAATGGTAAGATGGTATCACTTCGTTCCTGTAA
ATGCTGTAGAAACTAGGCGATGTTCGATATTCGAAATTTAGTAAACTATA
CCAGCGCAACGATATATTGGTGGTTTCAAACGATATTGGTGAAAGACTTC
CTCGATCTTGAACTTTGAGGATGATAGGCAATGATAACTGCATAATACTG
CCTGATTTATAAGAATTTTCGCTCCAAACTCAAAAGAATTTGTGCATGAG
AGTATTAGCAACAGAGCAAGTGAAAAATGAatggaaatttgtatttttat
acTAGCCCTGTTACGTTGCATTTGGTGTCATAATGATATGAAACAAAATT
GTAGTAGACACCAAATACACACGGATCTAGGGGAATTTTTATTCATGATT
CATTAAGGACGAAAATGACTTTCAAAAGCActttatttgaattttgttaT
GCTCTGAGAGGTTTCGACCAGTTTGGCCAAATTAGACCATTTGGACCAAT
CTCATTTTAAT
Run BLAST on NCBI

transcript from alignment at scaffold_271:30528..34053-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056288 ID=TCONS_00056288|Name=TCONS_00056288|organism=Clytia hemisphaerica|type=transcript|length=3526bp|location=Sequence derived from alignment at scaffold_271:30528..34053- (Clytia hemisphaerica)
TTTATCCTTCGGTTCCGTAGATGTGAGATTGCGATCAAACAACGAAGCCA
TAATCGCTGTCTCTCATCGTAAGAGGTAAGCATAAGAAGTACTAGTTTGT
TTCCTAAACCTCGCTTCTTTCTGTATATAGATAAATCTCGAAAAAAGAAC
TTTAGGCGAAAAAAATAGTGTTTCCGGAATACGGGTCAAGGAAAAAAGCT
CTCATGCGTCCGGCCGGAAAAACTTTTTTTGCTATTTTTGATCATTGAAA
TAGAACTTTTAAGATAACTTTTTAGTACAAACAGTATGAAGTAAGCCCTG
AATACTAATCTATCGATTACTAACGNTGCGATCAAACAACGAAGCCATAA
TCGCTGTCTCTCATCGTAAGAGGTAAGCATAAGAAGTACTAGTTTGTTTC
CTAAACCTCGCTTCTTTCTGTATATAGATAAATCTCGAAAAAAGAACTTT
AGGCGAAAAAAATAGTGTTTCCGGAATACGGGTCAAGGAAAAAAGCTCTC
ATGCGTCCGGCCGGAAAAACTTTTTTTGCTATTTTTGATCATTGAAATAG
AACTTTTAAGATAACTTTTTAGTACAAACAGTATGAAGTAAGCCCTGAAT
ACTAATGTATCAATTACTAACTAACTAAGTTTGCGGCCGGGTCAGAAAAT
TATTATTTTTTCACCCGGCCGGTTTCCGGAAACACTACATTTTATTATTT
TCGCTTTATCTATATTATCTGTCCCGAAATGAAATTTAGTTCAGACTCAT
GTTGTAAAGTCTTTACGAGACAGACTGGCTTTTTCCCTGCACTGATCCGT
CTGCAACTTTTTATCAAGAAGTGACTTTACGTACACTTTTTTTTAAAGAA
CATACAAAATTTTTGAAGCCTTTGGATGTTCTTAACATGCTCTTATTTTC
CCCCATTTTGCAAGTATTTTTGTATTCATTTTCCTAGGAAATCGGGTGTT
TTAGAGTTCATAAAGGCTTAAAATGTTCTCAACTTTTTCTTAACATTTTG
GCCATCGAAGCCTTATGTTTTTATATATTTTGTTCTTATAAAAAACGTGT
ATCGTTCAATCTTGAGGAGACGATTTAGTCAATGGGTTCGTTAATGCTGT
CCGCTAATTAAAGGACGGTAAACGCATTATTGTTGTCCTCAGTCTGAGTC
AGCCAGTCAGTCAGGAATTAAACAAATGAAAAACTAGTCGTCCCCAATAT
AGAAGACTTGGCAAACACGCACTTTATAATAGATCTTATCGGAGTTTTTT
ATTTTTCTAAAAAAAGCGATTTATTGTGGGATTGTTTCGGGAGAATTACC
ATAGAAATCTCTTAGGAATTCATCGAGAGAATTCTATTGTAATACTCTCG
AAACAATTCCACAATGCATCGCTTTTTTGANAAAAACGTGTATCGTTCAA
TCTTGAGGAGACGATTTAGTCAATGGGTTCGTTAATGCTGTCCGCTAATT
AAAGGACGGTAAACGCATTATTGTTGTCCTCAGTCTGAGTCAGCCAGTCA
GTCAGGAATTAAACAAATGAAAAACTAGTCGTCCCCAATATAGAAGACTT
GGCAAACACGCACTTTATAATAGATCTTATCGGAGTTTTTTATTTTTCTA
AAAAAAGCGATGTATTGTGGGATTGTTTCGGGAGTATTACCATAGAAATC
TCTTAGGAATTCATCGAGAGAATTCTATTGTAATACTCTCGAAACAATTC
CACAATGCATCGCTTTTTTGAAAAAATCAAAAACTCCGATAAGGTCTTTT
TCCCCAAAGAGTCCCGGGAAGGTCCCTTTCACTTTTTAAAAGGAATTGAT
GTTTTTTTTTCATTATTATAGGGCGAAGAATTTAGTTAAAGCATTTGCGA
TGAACAAATTTTACATCGTTGAAGAATATGACTGGTGGAAACATTCCAAA
GAAGCTTCCAAACTCAGGTGAGGAGATAGACGATGTTATCGTCCGTTACA
GTGATAGTAAAGGCGGGAAAATATGGCGGTATGGCGTTATGGCGGTAAAC
GGGAAAAAAATTGGCTGGAGAGTTTCGAAGAGTGGCAGTTTACCGGCTGT
AAACTCTTTTGGGCAAAAAAACCCGTTTGCGAATTTTCTTCGGCTTTTGG
CTTATTTCTTAGATAGTGATTTGTCTTAGGCGTAGTAGTTTTAATCGCAA
AGTTCACAAGAATGAACCGCTAGAATGGCTAAAATTTGAAAATTATACTA
TTTATTAAAAAAGGCCAACAAAACACCAAAAGACGTGTCAAACAGACAAT
TTTTTACTTTCTAGACCCTCAAAATTTTATTTTTTAATCTTTGACCAAAT
GTTCTCGTGTTGCAAAAGATTTCTCGATTGTTATTGCGCACACTAAAAGA
ATATGATTTCAGGAACATTAAAACAATGTATTTTATGGAATTCGAAAGTC
ACCCTTAGACCTAGTACCATCATTTTTCTATTGCGCTTTTCTTGTCACCG
TAGATTGAGTGGAAGTGTTACAGTGACCATATTGTCGTTAGCAACAGTTG
TGTATCTATGGAAACGATATCAATAAAAAGGAGTCAGGTATTCAAGCTCT
CTTCTAAGAAAAAAGGTATTTGCGAGGTCTGACAAGTCTGAGGTAAAGTT
AAATATATCTCGAAAATTTATCCATTTTTTGCAATTCGGACTAACACTGT
TGCCTTATCTTTTTCTTGAAACACGATTGGGCTGTTCCATTTGAAATCCA
TACAGGGGTGGACAAACCTTTTAAAGCAAAAAAGTAATAATTCTTGAGAA
TATGTGGATACCCCTTAAAAATTATTCTCCATATACCTTAGTGAGGGGGG
AAGAACTAAATTCAGTCTTTTACCCCCTGGAAATTCTTCTTAGGTTTGCC
CTCCCTGGAAAAGTTCGCCTCCTACCTGTATGGATATAAAATAGAATGTC
CCATTTAAATCCGACTTAAATATCTGGCCCTAGAGAGACTGAAAATGATT
ATCCAACCTTTATTTTTCAGAGGCTTGGATCTGATCGTTTTGCCGGGGGA
GACCAACAACGTTTGTTAATCGCCTTGTCTTAGAATGGTAAGATGGTATC
ACTTCGTTCCTGTAAATGCTGTAGAAACTAGGCGATGTTCGATATTCGAA
ATTTAGTAAACTATACCAGCGCAACGATATATTGGTGGTTTCAAACGATA
TTGGTGAAAGACTTCCTCGATCTTGAACTTTGAGGATGATAGGCAATGAT
AACTGCATAATACTGCCTGATTTATAAGAATTTTCGCTCCAAACTCAAAA
GAATTTGTGCATGAGAGTATTAGCAACAGAGCAAGTGAAAAATGAATGGA
AATTTGTATTTTTATACTAGCCCTGTTACGTTGCATTTGGTGTCATAATG
ATATGAAACAAAATTGTAGTAGACACCAAATACACACGGATCTAGGGGAA
TTTTTATTCATGATTCATTAAGGACGAAAATGACTTTCAAAAGCACTTTA
TTTGAATTTTGTTATGCTCTGAGAGGTTTCGACCAGTTTGGCCAAATTAG
ACCATTTGGACCAATCTCATTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035460XLOC_035460Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056288-exon-scaffold_271-1575043694:33979..34053TCONS_00056288-exon-scaffold_271-1575043694:33979..34053Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1575043694:32137..32232TCONS_00056288-exon-scaffold_271-1575043694:32137..32232Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1575043694:31517..31600TCONS_00056288-exon-scaffold_271-1575043694:31517..31600Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1575043694:30528..31083TCONS_00056288-exon-scaffold_271-1575043694:30528..31083Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1510915933:33979..34053TCONS_00056288-exon-scaffold_271-1510915933:33979..34053Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1510915933:32137..32232TCONS_00056288-exon-scaffold_271-1510915933:32137..32232Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1510915933:31517..31600TCONS_00056288-exon-scaffold_271-1510915933:31517..31600Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1510915933:30528..31083TCONS_00056288-exon-scaffold_271-1510915933:30528..31083Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1491911889:33979..34053TCONS_00056288-exon-scaffold_271-1491911889:33979..34053Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1491911889:32137..32232TCONS_00056288-exon-scaffold_271-1491911889:32137..32232Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1491911889:31517..31600TCONS_00056288-exon-scaffold_271-1491911889:31517..31600Clytia hemisphaericaexon
TCONS_00056288-exon-scaffold_271-1491911889:30528..31083TCONS_00056288-exon-scaffold_271-1491911889:30528..31083Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_271supercontigscaffold_271:30528..34053 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7277	9.71228	4.80435	5.41841	1.11264	1.00483	4.4703	4.96531	5.31381	5.2287	3.71831	5.22014	5.01691	4.64025	4.28341	4.81223	4.95498	5.62284	1.30047	1.36085	3.5458	4.50243	10.0682	9.58345	8.92162	9.48703	2.50508	3.36092	5.03666	6.46443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056288 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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