Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056324 ID=TCONS_00056324|Name=TCONS_00056324|organism=Clytia hemisphaerica|type=transcript|length=192bp TTACTCGGAATCGAATATTTGCATTATTCGAAGATCATACACCGTGATAT CAAACCAGCCAATCTCCTACTTGATGACAACGACCATATAAAGATTGCAG ATTTCGGTGTATCTGATATGTTCGAAGGGGAAAACGACTTATTGAGTAAA CACGCGGGTAGTCCGGCTTTTCAAGCACCCGAAGTCCACGAC Run BLAST on NCBI transcript from alignment at scaffold_272:305051..306466+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056324 ID=TCONS_00056324|Name=TCONS_00056324|organism=Clytia hemisphaerica|type=transcript|length=1416bp|location=Sequence derived from alignment at scaffold_272:305051..306466+ (Clytia hemisphaerica) TTACTCGGAATCGAATATTGTAAGTTGAAAGCGCAATACTTTgattgatg
aaaatgaccagAGGCACCTCTTTCAAAAAGCTATCTAGGTACTGGTATTC
TTCCTGGATTACTTGCCTCGCTATTGCTAAGTACTAAGTAGAATCGACCT
GGAAATCATTTGTCGATGTCATAAAGATTTCATTGAGGAAGGATATTGTG
GTACACCAGGTCTTAAACTTGCATTTTGGTGACAACAGTTTGACTAAAAA
GGATCACACACAAAATGCTTGCTCAGAAGAAATTTGATATTTGCTTAAGT
GTTTTACAAGTCTGATTCAAATCCCTCTAACCAACAttaagacacccctg
tgtcaaagacccgctgggaccccagccccactgaaaaatttgggcaaaat
ttcttccccacaaaataccctacaatttcagccccactgggaaattgact
ttgatttcatccccgtTCGAAACTTAATGCAAAAATTAGctgtccaaaac
catccccactggatacTTTAAGCTCGGGAGCAATAGAATTTCGATAGAaa
tctttatccccactgtatgaaaaagtttcaccggggctgtgagacagggg
tgtattaagtCCAACCTTAGTAACGAGTCATCTTAACGTTTCCAACATAT
CATTCTTCACAGTGCATTATTCGAAGATCATACACCGTGATATCAAACCA
GCCAATCTCCTACTTGATGACAACGACCATATAAAGGTTTGGAAAATATT
ATTGAAgctaaaatttaatttgaaagcGCCCTTTAGACTAGTATCAAATT
TGGCCTTGcaatagtctagcaagctagacgactaattaaGACATACCTAA
TAGAAATAAAGCAACAAGtacaggctcggatacagagggaggctataacc
aatggaggagagtgaactttattatcgtattaccttatatggaaactaat
tactctctatgaataagatagcctacctcctgtatccgaccctgaagtaa
tggagggaacgaAACTTAGTTTATACTAACTGAATCcggtaacaataatc
gtattatcatataacgcctatactactgtattacacgcattataaacaaC
TCCAGTCTAATAATTAGAGGAAATTTGTGAGTAAGGTTGGTTACCAACTC
TAACTACCCGTCTGAATTATTATTATCTGCCAACCCATTCATTTGATACA
TTACACCCACTTTTAtgaatttaatttttgacacattctcagaggtctgt
gattcaaattaaatcaaaacagtcaaaaaaaaccttttttcatattttct
ctCTTCGCCTGTCATAGATTGCAGATTTCGGTGTATCTGATATGTTCGAA
GGGGAAAACGACTTATTGAGTAAACACGCGGGTAGTCCGGCTTTTCAAGC
ACCCGAAGTCCACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00056324-exon-scaffold_272-1491911889:305051..305069 | TCONS_00056324-exon-scaffold_272-1491911889:305051..305069 | Clytia hemisphaerica | exon |
TCONS_00056324-exon-scaffold_272-1510915933:305051..305069 | TCONS_00056324-exon-scaffold_272-1510915933:305051..305069 | Clytia hemisphaerica | exon |
TCONS_00056324-exon-scaffold_272-1575043694:305051..305069 | TCONS_00056324-exon-scaffold_272-1575043694:305051..305069 | Clytia hemisphaerica | exon |
TCONS_00056324-exon-scaffold_272-1491911889:305713..305786 | TCONS_00056324-exon-scaffold_272-1491911889:305713..305786 | Clytia hemisphaerica | exon |
TCONS_00056324-exon-scaffold_272-1510915933:305713..305786 | TCONS_00056324-exon-scaffold_272-1510915933:305713..305786 | Clytia hemisphaerica | exon |
TCONS_00056324-exon-scaffold_272-1575043694:305713..305786 | TCONS_00056324-exon-scaffold_272-1575043694:305713..305786 | Clytia hemisphaerica | exon |
TCONS_00056324-exon-scaffold_272-1491911889:306368..306466 | TCONS_00056324-exon-scaffold_272-1491911889:306368..306466 | Clytia hemisphaerica | exon |
TCONS_00056324-exon-scaffold_272-1510915933:306368..306466 | TCONS_00056324-exon-scaffold_272-1510915933:306368..306466 | Clytia hemisphaerica | exon |
TCONS_00056324-exon-scaffold_272-1575043694:306368..306466 | TCONS_00056324-exon-scaffold_272-1575043694:306368..306466 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_272 | supercontig | scaffold_272:305051..306466 + |
Blast
BLAST of TCONS_00056324 vs. Swiss-Prot (Human)
Match: KKCC1 (Calcium/calmodulin-dependent protein kinase kinase 1 OS=Homo sapiens GN=CAMKK1 PE=1 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-23 Identity = 41/61 (67.21%), Postives = 50/61 (81.97%), Query Frame = 1 Query: 1 LLGIEYLHYSKIIHRDIKPANLLLDDNDHIKIADFGVSDMFEGENDLLSKHAGSPAFQAPE 183
+LG+EYLH KI+HRDIKP+NLLL D+ H+KIADFGVS+ FEG + LS AG+PAF APE
Sbjct: 260 ILGLEYLHCQKIVHRDIKPSNLLLGDDGHVKIADFGVSNQFEGNDAQLSSTAGTPAFMAPE 320
The following BLAST results are available for this feature:
BLAST of TCONS_00056324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 ( blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match Name | E-value | Identity | Description | |
KKCC1 | 5.553e-23 | 67.21 | Calcium/calmodulin-dependent protein kinase kinase... | [more] |
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