TCONS_00056396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056396
Unique NameTCONS_00056396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056396 ID=TCONS_00056396|Name=TCONS_00056396|organism=Clytia hemisphaerica|type=transcript|length=631bp
CGCCTATCTAGAGTTTTTAAAGGGTGCTCGTCTTTGGATTTGCATGATCT
CTAGCAACCTAGGCTACGATTCTCGCAGCGTGGATTTCCAAACCTTACCA
ATCAATGTGTTCAGTTCTTTTATCTacctattttaaagaaaatgttgTCA
ACAGCTAGCTCTGActccaaaaaaagaaatataattctcaatttattttt
caatttttattttcaggttcttttttcaaaatatgaccCAATGGTTATGG
AGTCGAATGATGATATCACCGGATATTTCACTGGGCTCCATTGGGCCACT
TTTGAGTAtctctcaaaatttattgtttcgtTTTTAAAACCTTGTGCAAA
AAGCATTCCTCTCACTAACCAACTAGTATTATATTTAGCAAGGTGCAGGT
TAAATATCCCGATAGAAGTCATCAAGTCAATTCGTCACCAAGCACAGTTC
CCAGAATTTTTCACAAGGTTTATATTTACTTTATTGCACAGTGCAAGTTA
AAGTTTTTGATCGCAGCTCCTGACAGTGAGTTTGTCAGAAAAACCCTACA
CCtgttttcaagaaatattttcccAGACTCACACATATCATTGATTGTTT
TcacaaatagaccaaaaaaaGTAGCACAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_275:34952..35582

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056396 ID=TCONS_00056396|Name=TCONS_00056396|organism=Clytia hemisphaerica|type=transcript|length=631bp|location=Sequence derived from alignment at scaffold_275:34952..35582 (Clytia hemisphaerica)
CTTTGTGCTACtttttttggtctatttgtgAAAACAATCAATGATATGTG
TGAGTCTgggaaaatatttcttgaaaacaGGTGTAGGGTTTTTCTGACAA
ACTCACTGTCAGGAGCTGCGATCAAAAACTTTAACTTGCACTGTGCAATA
AAGTAAATATAAACCTTGTGAAAAATTCTGGGAACTGTGCTTGGTGACGA
ATTGACTTGATGACTTCTATCGGGATATTTAACCTGCACCTTGCTAAATA
TAATACTAGTTGGTTAGTGAGAGGAATGCTTTTTGCACAAGGTTTTAAAA
acgaaacaataaattttgagagaTACTCAAAAGTGGCCCAATGGAGCCCA
GTGAAATATCCGGTGATATCATCATTCGACTCCATAACCATTGggtcata
ttttgaaaaaagaacctgaaaataaaaattgaaaaataaattgagaatta
tatttctttttttggagTCAGAGCTAGCTGTTGAcaacattttctttaaa
ataggtAGATAAAAGAACTGAACACATTGATTGGTAAGGTTTGGAAATCC
ACGCTGCGAGAATCGTAGCCTAGGTTGCTAGAGATCATGCAAATCCAAAG
ACGAGCACCCTTTAAAAACTCTAGATAGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035541XLOC_035541Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056396-exon-scaffold_275-1491911889:34952..35582TCONS_00056396-exon-scaffold_275-1491911889:34952..35582Clytia hemisphaericaexon
TCONS_00056396-exon-scaffold_275-1510915933:34952..35582TCONS_00056396-exon-scaffold_275-1510915933:34952..35582Clytia hemisphaericaexon
TCONS_00056396-exon-scaffold_275-1575043694:34952..35582TCONS_00056396-exon-scaffold_275-1575043694:34952..35582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_275supercontigscaffold_275:34952..35582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.453495	0.895895	0.324258	0.303566	0.0708446	0.263257	0.681397	0.951838	1.28599	2.0323	0.047738	0.0512302	0	0	0.536213	0.093518	0.650273	0	0.0963936	0	1.71499	2.41672	0	0.123027	0.0933117	0.0950698
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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