TCONS_00056445 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056445
Unique Name	TCONS_00056445
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1811

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_276:667408..679583+

transcript sequence

>TCONS_00056445 ID=TCONS_00056445|Name=TCONS_00056445|organism=Clytia hemisphaerica|type=transcript|length=1811bp
TGTTTACTTAGTATTACTgtaaagaaataagaaaaacaacaaagacCATG
GCTGATGATTTTGATGTAGACGATCTATTGGAagcaccttttcaaaaagt
gGAGAATGGGGATGATAAAGTTCGAAAGAGTGGAAGCGAAAGCCCAGCTa
ctgaacaaaagaaaaaaaagaaaagGAGTAGATCAAGATCTAGAGATAGA
AAAAgAAAAAGCCGCTCAAGGTCAAGAGACAGGCGGAGAAGTCGCAGAAG
CCGTTCAAAATCAAGAGATCGAAGgaGAAGTAAATCACGTTCAAAATCAC
GTGAAAGGCGTAGAAGAAGTAGAAGTCGATCACGTGACAGAAGGAGAAGT
CGAAGAAGTAGAAGCAGAACAAGGTCCCCAAGGCGCTCACCATTGAGAAG
GAGATCCCCAGATAGAGAATTTGTCCGACGAAGCTCCGATGGTGTAACAA
CAATTTCTTTGCGAGGAGATCGTGACCGTGAAGATGACCACATCACGCAA
GAAGAACGTGATGCACGTACTGTCTTCATCATGCAGTTGGCACGGAATCT
AACCATCCGCGATATCCAAGATTTCTTCAGTAAAGTTGGTCAAGTTCGTG
ACGTCAGACTCATTTCAGATCGAAACTCTAGACGCTCCAAAGGAATTGGT
TATGTGGAATTTACAGACCCTAGCGCTGTCACTTTGGCTATCAAATTGTC
AGGGCAGCGTTTGCTAGGTGTTCCCATAATGGTATCTCCAACAATGGCTG
AAAAGAACCGTTTCGCGGCACAACAAGCTGCGGTCACCAAACCATCTGGT
CCCATGAAGTTATACGTCGGTTCTTTGCATTACAATATAACAGAGCCTAT
GCTTAAAGCGATATTCGAACCGTTCGGGACCATCGACAGTGTTCAGTTAC
AATACGACAGCGAAACGAACAAATCGAAAGGTTACGGTTTCGTCAATTTC
CAAGATTCCGTGGCCGCCAAACGTGCCATGGAACAGATGAACGGATTTGA
ACTAGTTGGCCGACCAATCAAAGTGAACACAGTATCAGAGCGGTCTGATG
GCTCCATGTCTTTCCTTGATGATGAAGAGACAGAGAAAGGTGGTATTGAA
ATGAACGCACAGTCCAGAGCCTCGTTGATGCAAAAGCTGGCACAAACACA
TGGTTCAGGAATGCAAGTACCACAAGTTCAACAAGTTTCAGGAATGTTGT
CTTCACCTTTGTTACCTCTTGGTGGAAGCACGTGTTTAATTCTATCAAAC
CTCTTCGACCCTACAAAAGAAACCGATCAAGATTGGGAAATGGATTACAG
AAACGACGTCTTGGAAGAAGTAACAAAACATGGAATTGTAGTTCACATCT
CTGTTGATACTATCAGCCCAGAGGGCAACATTTATTTGAAGTGTTTAACG
GCAGACGTGGCAAGTAAAATCGTCCAATCGTTTAACGGTCGTTTCTTTGC
TGGCCGCACCATTCGTGCGACGCCTGTACCCACTGCCAATTACCATACCA
TGTTTGCTGATTCCGTGAATGCTtaggaaaaagaaaaaaagatactAGGC
TCTGTACCACGTGACAGTACAGAATCGAAATGTTCATGTAAAACTGAATG
CATGATTTATTGGGATCATGGActgattattttttctttatattgaAAAG
TTCTGGTTTGATTATGAGTCGCAATCTTTGTTATATTATTATCATTGTAA
AATATGAAGTTTTTATGAAATACCTATACTCTTTGACAGGCTACATTTGT
TACTCTCCTTTTTCTTTTAGTTATCTTTCTTGATTCAAATttaggctctt
ccagaaaatga

Run BLAST on NCBI

transcript from alignment at scaffold_276:667408..679583+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056445 ID=TCONS_00056445|Name=TCONS_00056445|organism=Clytia hemisphaerica|type=transcript|length=12176bp|location=Sequence derived from alignment at scaffold_276:667408..679583+ (Clytia hemisphaerica)
TGTTTACTTAGTATTACTgtaaagaaataagaaaaacaacaaagacCATG
GCTGATGATTTTGATGTAGACGATCTATTGGAagcaccttttcaaaaagt
ggtAAGCAAACATTTGAACAATATTATTCCTTGAGTTGCtgatttttctt
actttttgcctaacaaaaacaaaaagatatttaaaataACTCATCTGTGT
GTTGAAAAAATTCCtccgtttttttttacaaattttctacacaaatttta
caatttttgcacaaagatgcataactataaaccctcgaatgtgatggagc
ccgattttctaaaaaaaaattttttggccaaatttgggctaaaaaacggc
taaaaaacaggtttgaATTGGAtcattagctttttctgattttttgcatg
aaagtagggtaccatcataggtaaaaatgtttatctataagaatcacttt
taataagcatacatcaatgttcttagttaaattactcaatttttttatga
gatatatgtttttttgctcacgagggcttacttttgaagaatgtgtgtgt
ttagacataaaAAATTGGTTTCTTggtgtgtttttatagaaaaactggcc
aaattcgatatttatttataagcacatcaattacttaggtactgtattag
cttttctcgagattggatctttgattctttatgattttttgcacaaagat
gcataactataaaccctcgaatgtgatggagcccgaatttcgaaaaaaaa
aatttgggggcaaatttgggccaaaaaaccgctaaaaaacaggttttttg
gtctttgtgaaaaattggattattaactttttctgattttttgcatgaaa
gtagggtgcCATCAtgggtaaaagatggctcaagcagattttttcaaaaa
aattttgttggctcaaataacccatgtttatctataagaatcactattaa
taagcatacatcaatgttcttagccaaattactcaattttttgatgagat
gttttttttgctcacaaagtcttatATATATAAGtatgaaaattataaat
atgaaagaatatttcaagattatgaaattttggtttttaaaccttttttt
tataagaaacaaacgactaattttgatagattgtcactatttgtgttctg
aatgattgtttaatggtcacgctcacgtagatatcaattatatatgtgtt
aaaatgcataaccaggtaggtgcataaaagtatcacttgtttgacTTTTG
CTTAATGTTTGATTTTAGGAGAATGGGGATGATAAAGTTCGAAAGAGTGG
AAGCGAAAGCCCAGCTactgaacaaaagaaaaaaaagaaaaggtattGTA
GAAAATATAAATATGATATCTGAACTCTTTTCATCTAAAGTACTACTAAT
AAGTCCTTCCCGTTCTATTGAATTTGCATACTCGTGTGGTActaaaaaat
ttaccaaaacatGGATAAAGGAATATTTGAAAATACTATCCTTTTTTATA
ACACTGCAAATCGAATGATGGAGACAAATTTTAGATGGAAGCAAATATTT
AGACAGAGAGACAGTATATATTGATATGGGGATGTATTTTGATGCaaggt
tttctttgttttttctagATCCCTTGGTTTTCACAATGGATACAAATACT
GATGTATTCTTTTATGAACTGTCTttgatttaaagaaatttatcgCCTCT
CAACTGAAAAATTCGCAATTAGGGTTTTAAATTCTAATCAAACCCTTGAA
GACCTCAAAGATCTCACACCCCTAACTACAAAGAAATTAACTTTTAGACC
TGTCAATATTGACTTGGTGTAAGTGAATGTGCACTGTAAAATACAAATGG
TCTACCCCCATAATATACCCTAAAAGCCTATAGGATACACACATAACCTA
GCAGCCAAACCATTTACCAATGCTTCAATCTNTCTCAACTGAAAAATTCG
CAATTAGGGTTTTAAATTCTAATCAAACCCTTGAAGACCTCAAAGACCTC
ACACCCCTAACTACAAAGAAATTAACTTTTAGACCTGTCAATATTGACTT
GGTGTAAGTGAATGTGCACTGTAAAATACAAATGGTCTACCCCCATAATA
TACCCTAAAAGCCTATAGGATACACACATAACCTAGCAGCCAAACCATTT
ACCAATGCTTCAATCTGGCTTTATAATCTAAACTAGCTTTATTCTTGTTT
AGGTACCAGACTTTTTATTAAATGTAGGTTTGATTGAAGTGCAGAAGAGC
CTTTGTTATTCTACACGCAACCGGAAAGGAGTGTAAAAATGCTAAGAGGT
TTATAAAATTTACTTGCTggtgaataaaaaacaaacagaaaaatttattt
aactCTGGGTTTCAGTTTGCAGTttacatttttaaatttgagtaatttca
gTAATTTTGTCTGACAGGCAAGACCAATTTGATTCCTAgtttaaagtttt
gaaaacttaGTCAGTTAATGGTTTTGCAACGTTCAAAGTGGAAAATAAGA
TCAAAGCTTAGGAGGCAAACAAAAGTGAATATAATAGGAAATAGCATCCA
TCCATCTCTATTATTCACAATAGACAGTAAAATTGGTCTTgccttttcaa
aaatcaaatattttgtgcTTAAAATAACTTAAAAAGTGACTGCATTCTGA
AACCCTTAGGCACAGAACAGGTTTTAGTCGTGAATTAACATTTCTATCAC
TTGTCTCTTTCAGGAGTAGATCAAGATCTAGAGATAGAAAAAggtattta
aaaattttatccCATCAAAAATATGTTTCTATTCATCAAAATAATGATGA
GCTACAATCTACAATTTCTgcatatttttttacaatttgtCAGATGTCAT
GTCAGATTATTACCACTATCCCTTTTTTTCTACATAATTATCcaggaatt
tttttgaaaataaatatttcttctTTCATACCCCTTCAAGAAAAAAAGGA
TGATTGTAAGGTAAAGCATGACACTTATAAACCCtttattttaaatatta
caGAAAAAGCCGCTCAAGGTCAAGAGACAGGCGGAGAAGGTAAATTAATA
TTTCATTCACTTTCTTTTGGCATATGGCTACGCCTTTTTCAGTCCAACTA
ATTTCTGATTATGCccatatttcaaattttcataaccGATAGGACAATAC
TACAAGGATATTCAAAAACTATTAGTCTGGCAATGTTATGAATTTTGAGC
ATTTATTTCAGCTGTTGTTAATCTTACTCAATCTCCACTCTTTTTTAGTC
GCAGAAGCCGTTCAAAATCAAGAGATCGAAGGTAATAGAATCAAACATAC
AATTTGTTCACTTGGTCTTCAAGAATTTATTGAATCCTTAGTATATTTAC
ACATGATCCCCTCCAAATGCTACAAATCCATTTCCATTTATGTAGTATTT
TAAATCTGCACTCTAGATTAACTAATGGCGGATAGATTAATTAGTTTTTT
GTCTAAAAATAGGCGTTTTAGcccctttttttcattttggtaagACCTAA
TTTTTGGTTGATTTCGGCTTGACAAAAAGAGGGTCTTTAAAAGATGTTAA
GCACGCGGTGCATCTTAGTTAGTACTACCAATTATTAGGAAGGTATTATg
attctttttcttatttttttcaggaGAAGTAAATCACGTTCAAAATCACG
TGAAAGGCGTAGAAGAAGTAGAAGTCGATCACGTGACAGAAGGTAGTCTA
AATATGATTTTCAAATGTTCTTCAAAGTCAGCGGGCTCTGGCATATCCCT
TTTGTATTTTGTGAAGCCTTATTCAGAGTCCACTCAAAGATGGTGAATCC
CTGATGATTGTTAGCAAGAAACTTGAAGTGCTACATTTAAGAAAGTAGCG
ATAAAGGTGGGTTTGTTTCACCAAAGACAGTGCTCTACGTAAAGGAGCAA
TACAATAATGATgagtcaaaactttttttaaaatgtagaacttaaagtat
taaaattttattttttctaattacTCATTAATTTTACGACTTGTCGATTC
TAGCaatgtttgaattttgaattttttcaattagATCAAACTTGTATCAt
atgtagctgatgattgtaagcatgaaactttaagttTTGACTCATCATTA
TTACATTTAAGATAgaaagttttgacatattttatattatatacaCTCTA
TGAAGTGCACTGTCTTTGATGATACAAACCCACCTCTATTCATACTGAAC
CCCTCTGTAAAACTTGTAACTATTACGTAACAGCTAATACGTTGTCATTA
GAACTGAGGTCTGACTTATGCATTTTTGGTTCTAGTGAATTAGAAAGTCT
TTTCGATCTTTTTCAGGAGAAGTCGAAGAAGTAGAAGCAGAACAAGGTCC
CCAAGGCGCTCACCATTGAGAAGGAGATCCCCAGATAGAGAATTGTAAGT
CAAGTCCGTGTCTGGCTTGTGCTTTAATGTGCCAATAATCAGTTAACAAC
TTGTGTTTATTCCTGTAATGTCTCCCACCTCACCATCCCTCCTCactgat
ctttttttttcaacctttaACTTCGATTTCTTAGTGTTGTGAAACCTTAA
CTGATTATATCGATACCCTAAACCGAACTGAAAAGAACGAAACAATATTG
GGAGACATTATAGGAATTAGTTATTCTAATTCACTAGAACAAAAAATAGA
TCAGTCAGACCTCAGTTCTAATGACAAcgtattggaactaattttcgtga
gaattaattttagcgtttttcgcggtttttcgtcaaagtCGCGAACATTT
GAACCCGCAAAAAAATTTGAGAGTTAAAAACAACGAAAATTGATTCCTGC
Gagatacaattttttccaattttattaaaaaatttcaaaaatccctagga
aatttgtccaaaaaagggcaaaaccgcgaaaattaaaactcgtgaaatgc
aatttttcggatattttttttcgaccatgaaaattagttccaataaggta
tctCCTACCATTTCCTTACGAGGAATTTTTGAACCTACTCCCCCGCAATG
TACCAGAACATTATTCTGTTAATCCTGCATTGTCAACATAGAGGCGTGCC
TTCATTCTATATCATGAAAAATTGGtatctttttaaaagtttttattcGT
CAACTTTTCTTGACTGTCTGCGGTTGTTGGGAATGTACCCTCgtccgggt
caacccatgccatgtgaggggataTGCCTGGCTTTGTGGTGAGTCGTTCG
AGTATAATTACTATACACCAGCAGCTCGATGTGTCCCGAGCACGAGTTGG
CAGGGTCAGGAAAGCACAGTCCTATCCTAGGATAGTGAATGTTGTCCTGG
ATAGGGCCTGTTCCGTCTATCGGAAGGTTAATCCATCTTTCTCGCTACAG
TTGTCGAGCACAAGGTATTTTGCCCTTACCAATCGATGCTCTTCTAATGT
ATtactctttttggacctacctggaggtcctataaattaacctttgttcg
tccgtccgtccgtccgtctgtccgtccgtccgtccgtctgttaccagctt
ttctcaagattggctcattagttttttctgatttttgtcacaaagatgca
aaatggcaatgcccaaaatgtgacggagcccgattttcgaaaaaaaaaat
tttccggccaaaaatgccggaaatatgccggaaaaaccagttttttgaca
ttttctcgagatttcatcataagttttcaaaacatgacagagttcgattt
tttgagaaaattctttttccggccgaaatgccgaaaatgccggaaatatg
ttGGAAATCGctgattttgcagattttcattgggctttttcctaacattt
ctttgttttttctaaaaaaaaacatcattgataGCAATTCCCACTATCAT
tcatgattcgattgtcaataaaactgattttttttctcgaagaagaaaat
gtcactgtagagcgcgatggtttgagttttctagaaaccttatttattaa
gctgtatatttttctgaaagtggattgtttttataaagaaaagcgtttaa
tagttttttagctttttcaatAGGGTTGATAATTTCTCCCAATAGACACG
ctttcattgtatattttttattttgtccagttatgtcttatgtgtttcat
tgtttcaattttcattgattagttttgataaccaggtaggtccataaaag
tatcacttgtttcattTCAAAGTGTCCGACGAAGCTCCGATGGTGTAACA
ACAATTTCTTTGCGAGGAGAGTAAGTAGTAACGCTATGTTTTAAATTGCT
TATTTGGGTTCTAGAAAgaaatgtcttcttttttttattatttaattttc
taaaagaaaacaaaaataactcCTTGAAGATTTTTACAAACAGCGTGATT
CTGATCGATTACTTTCTAACAACTTGCTAGTATGCTTGCTTATCAGTCTT
catacaaaaaaatcaagaaaaaagaaaaaccaatCTATTCTGAAAGAAGC
TTTCTGCCAGCCTTATTAttgatgattattttttttcaatttatttcagT
CGTGACCGTGAAGATGACCACATCACGCAAGAAGAACGTGATGCACGTAC
TGTCTTCATCATGCAGTTGGCACGGAATCTAACCATCCGCGATATCCAAG
ATTTCTTCAGTAAAGTTGGTCAAGTTCGTGACGTCAGACTCATTTCAGAT
CGAAACTCTAGACGCTCCAAAGGAATTGGTTATGTGGAATTTACAGACCC
TAGCGCTGTCACTTTGGTAAGTCATGTATCTTTCTGAACCACAATCTGAT
ATTCCAATCATGTTTTTGTGATCGCttacaaagaaatattttaatggGTT
GTTTTTCAAATTGGATGTTATTGGTAGCTTGGAtgacgagatttacgttt
gacTACGTCTCGAGAGATTCTTCTTCCAGCATCGGGCAAGGTTGAGAATG
TTTTCTCCGCAATTTGTACTAAAACCTTCTGATTACCCATAAATTATCAA
GAGCAATTCTCTTTAGTTCAATCAAGGAGGAAAAGGTTAAATTCGAATAC
ATCGAAATGTTAAACGCTCGCCCTTGTGTCACATCTATTATTAACCTAAT
AATTCGAACCAACCCTATAATTTGACTAATCTAAAAAGTCTTCACATACT
TATTTNTCTAGTATTAACCTAATAATTCGAACCAACCCTATAATTTGACT
AATCTAAAAAGTCTTCGCATACTTATTGAACCAAACATCTTTTCTTCATA
TTTCAGGCTATCAAATTGTCAGGGCAGCGTTTGCTAGGTGTTCCCATAAT
GGTATCTCCAACAATGGCTGAAAAGAACCGTTTCGCGGCACAACAAGCTG
CGGTCACCAAACCATCTGGTCCCATGAAGTTATACGTCGGTTCTTTGCAT
TACAATATAACAGAGCCTATGCTTAAAGCGATATTCGAACCGTTCGGGAC
CATCGACAGTGTTCAGTTACAATACGACAGCGAAACGAACAAATCGAAAG
GTTACGGTTTCGTCAATTTCCAAGATTCCGTGGCCGCCAAACGTGCCATG
GAACAGATGAACGGATTTGAACTAGTTGGCCGACCAATCAAAGTGAACAC
AGTATCAGAGCGGTCTGATGGCTCCATGTCTTTCCTTGATGATGAAGAGA
CAGAGAAAGGTGGTATTGAAATGAACGCACAGTCCAGAGCCTCGTTGATG
CAAAAGCTGGCACAAACACATGGTTCAGGTGAGTCAATATATCCTAGATA
AACTCTAAAGCTTTTCATTTTATAAACTTGAGTTTTCCTTCCAATAATCA
TTCTTTATACCATGTGTCTAGAAACAGAGCGGAATGGATTCTTATAAATC
ACAACTTAAATTCACAAAAGCAACAGTCACGTAGTAGTGAAGTAGATATG
ATTCTCCACTCTTCGGTTCCCATTCGGTGCTACGATTcagtgaatgtacc
ttcgcccTGGTCGACCCCTACCATGCGAGGGGAATTTGGTAGAAGAGTGT
GGGGAGGTATGTCAAACATTGCAACTGGGGCGGTGACTTTGCTTGcatta
attcatgatatgcaccgttGCATTGGTTGAAAATAACGTAttaactgatt
ttacgtcacttacaaccaatcagctagatgtaatgtcagaagatatTGCT
CGCTCTACCATCTTGTCAACCCCGCGCTCTTCATCATTCTTTAAGAAATC
TTAAATGGGAAAAAGACccggggggcactgggtttgccaactgacggtat
gtgcggcgaaaaaattggcttttaaaatcgcacccttacagtgtagcaAA
AAACGCCGAAATTCCGtcaaattcatacccttacaaattttcaatccttt
tagagcaaaaaaattaatttttccttgaattactataatttccaccctta
cagtgcatttaacAAAAAGTCTACCCTTACAGCGCATTTCTGCTATCTTG
AAAAATAGACCCTTagccgccgcacatacccgtcggtcaatttgcctggc
tgcccccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNcgccccccccccccccccagggaaAAAGACAATGGCAACAGAC
CCTTTtttgcaatgaattttgaaattagccgtagatatcgggtctgtgcA
CAGATAAAGGGTTAAAGGGATAAGGCCTATACAGTTCGCATCGGCAGGAT
TTCATTTGAATTGAAATCCACAGAATgagtttgaaatgtttttcagGTGT
TCCAAAGTAAGCGACTCggtgaaaatttatttgaaaacctttgtaatctt
tttggatttcttttATAGGAATGCAAGTACCACAAGTTCAACAAGTTTCA
GGAATGTTGTCTTCACCTTTGTTACCTCTTGGTGGAAGCACGTGTTTAAT
TCTATCAAACCTCTTCGACCCTACAAAGTGAGAACCCTGTCTCCTGTTGT
GTAGATTCTTTTTCCTGATTAGTGCATACTGTAATTTCGAAATAAAACAT
CTCGACGATGATCTattcaaaaattgtcaattttcattCTTTGGAAAGAA
GTTTCGTGCTGCTATGgaaactactttaggcgtacaaactttcgcgagca
gaaactttcgcgaggtcgaaaaatcgcaaaatctacgacatttactttcg
caaatttgacaaaaaaaattttcgcgagaaactttcgcgaatgaggTATA
TTTTTAGTAGAAAATTCAAGTTTTCGGCGCATAAAACTAGTGTTTTGATC
GTTCAAATGTATTCAAACAACAATTGATGGACTTTTGCTTAGTATCTTCA
CTAAATTTTATCCTTGTTATCATCaaagaggaaaatttgagtgaatttcc
ttttcagattttttttcgcgagcataaactttctcAAATTACCctctcaa
gaattttcaagatatttactttcgcgaaaagggctaaaattcgcgaaaat
cgcgaaagtttctgctcgcgaaagtttgttcGCCTAATGAAAACCGTTAT
TCCCGTTGCCAAAGATAGCGAAGGACCTTTAGATTTGATATAATattagt
gtgcaaaatttcaaaattaaaataccATTTGCAATGTTTACATGTTGTTT
ATTTGAGCAAAACTTCTTCACTAAAAGGGTcaattgaaagtgaaaaaaaa
tcagaaaaaatttgatcTTCGAAAACTTACTTGCTGGTGAACTTCAACTA
ATTGTTTTCTTGTTCCATCTTTTTTCAGAGAAACCGATCAAGATTGGGAA
ATGGATTACAGAAACGACGTCTTGGAAGAAGTAACAAAACATGGAATTGT
AGTTCACATCTCTGTTGATACTATCAGCCCAGAGGTATGAATTCATTTAG
TTGTTTTAACCAACGTAATGGGCCAAAGCCTAACCTAGGACCTGACCACA
AATGATAGTGATTGGAAATTTTAATGTATTCACGAGGGcagtcggaacca
ctacatggaaaaggcaactattgccttagcgggaaatatttcccgaacaa
cgggaaggtggaaaacttcccgaaatggTTAGACTTTCCAAATCGGGAAG
TTCACCAGTTTTCTGATCGGGAAAGTGACCTCTGAGCACTCTGAAAATGC
CTgtgaaaagtttaaaatttgtcCCTCTTGTGAAGGagggaaaataaata
atattcaccaggtagttaagaaatccaccTGGTAACCGCTTCTTGattct
actttccccattcccaattaaaaacttccctaTTAGGAAACtttttctcg
atcgggaaacaaaaatctgctttgtttacaaaaattctatttcccgttcg
gggacgatgaaaagttcttgaccaaaacgggaaacagaaaagtTATGAAA
TTctcaatctggaaacagtttcctGTTCGGGTTATTTTCACCCCACCGTT
CGGGAAaaatttcccgttaaggcaatagttgttTCATGTAGTGGTACCGA
CTGGAGGAGGCAGGATCCACTGCTAAGGCATTTCAGTTTGTTGTGGGATC
CTTTTTTGGTTTTGTCTCTTACTTAAACACTGCAGCTTGGCAAGTTGTGT
AAAGAAACAGCCAACCAAGTAGACCTAGCACATAGTCAGTCGGAACCACT
TCATAGAAATGgcatttcccgaacgggaaggtgaaaataacccaaaaagg
aaactgtttccagattgaaaatttcatcacttttcagTTTCCGGTTttgg
tcaagaacttttcattgttcccgaacgggaagttgaatttttgtaaacaa
agcagatttttgtttcccgatcgagaagaagtttccaaatagggaagttt
ttaattgggaatggggaaagtagaatCAAGAAGCGATTACCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTATTTACCTTCCACGACCATTTCCGGAGTGCGCA
GAAGTCacattcccgatcgggaaactggTTAACTTCCTGATTCGGAAACT
CTAtccatttcgggaagtttttcaccttcccgctcgggaaatatttcctg
ttaaggcaatagttgccatttctatgtagtACAGTTGTTGTAATTGAAGA
GAAAGCACTCATACGACAGATTACAGAGCCTACGCCTGTCAGTGTATTAA
ACATTTGTTCAGTGAACCTGCTAGCTAGTACACAAGAATACTGagtgtaa
aaaaaggaagaatatATCCATTGTTGGAAGTGGCTAAATCAACTTTCCTG
CAAAGGTCGTTTTTGACAATAACCCGTTCTTTATCATTTCCTTTTTGAAA
CTTGATAATAATTGTAAAAGTATTTCGTGAGAAAACCATTTTATTGCTGT
TCTCTTTTTCAGGGCAACATTTATTTGAAGTGTTTAACGGCAGACGTGGC
AAGTAAAATCGTCCAATCGTTTAACGGTCGTTTCTTTGCTGGCCGCACCA
TTCGTGCGACGCCTGTACCCACTGCCAATTACCATACCATGTTTGCTGAT
TCCGTGAATGCTGTAAGACCTTTGAAACCTGATTCTTGAGCATTCAATAA
GCCTTGATTGGTGATCTAAATGATGATTGTGTACAGTAATGAAATGACTT
TTAATGAGGAAAAAAGACATCGAAATAAACTTAGTTTAATAATGGGACAC
AAGAAATTATCCAACTGCCAACTGACTCTTTCATAAAGCTCAAAGACACG
TGGTTATTTTGATATAATGAGtcaattttctttatcagtaggaaaaagaa
aaaaagatactAGGCTCTGTACCACGTGACAGTACAGAATCGAAATGTTC
ATGTAAAACTGAATGCATGATTTATTGGGATCATGGActgattatttttt
ctttatattgaAAAGTTCTGGTTTGATTATGAGTCGCAATCTTTGTTATA
TTATTATCATTGTAAAATATGAAGTTTTTATGAAATACCTATACTCTTTG
ACAGGCTACATTTGTTACTCTCCTTTTTCTTTTAGTTATCTTTCTTGATT
CAAATttaggctcttccagaaaatga

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035571	XLOC_035571	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_276	supercontig	scaffold_276:667408..679583 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6617	2.39502	8.83507	3.24662	23.3141	0.553775	0.695895	0.368599	2.01483	3.02104	2.80639	3.61374	0.986356	3.09642	0.784944	7.25848	1.67693	4.51432	13.118	3.42203	0.137581	0.131863	0.0707834	0.156021	0.972221	9.66925	0.983948	0.417889	8.7414	0.712164

Blast

[Close]

BLAST of TCONS_00056445 vs. Swiss-Prot (Human)
Match: RBM39 (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 365.925 bits (938), Expect = 1.938e-118
Identity = 190/381 (49.87%), Postives = 248/381 (65.09%), Query Frame = 3

Query:  486 DHITQEERDARTVFIMQLARNLTIRDIQDFFSKVGQVRDVRLISDRNSRRSKGIGYVEFTDPSAVTLAIKLSGQRLLGVPIMVSPTMAEKNRFAAQQAAVTKPS-GPMKLYVGSLHYNITEPMLKAIFEPFGTIDSVQLQYDSETNKSKGYGFVNFQDSVAAKRAMEQMNGFELVGRPIKVNTVSERSDGS--MSFLDDEETEKGGIEMNAQSRASLMQKLAQTHGSGMQVPQVQQVXXXXXXXXX--------------------------------XXXXXTCLILSNLFDPTKETDQDWEMDYRNDVLEEVTKHGIVVHISVDTISPEGNIYLKCLTADVASKIVQSFNGRFFAGRTIRATPVPTANYHTMFADSVNA 1523
            D++T EERDARTVF MQLA  +  RD+++FFS VG+VRDVR+ISDRNSRRSKGI YVEF D S+V LAI L+GQR+LGVPI+V  + AEKNR AA    + K S GPM+LYVGSLH+NITE ML+ IFEPFG I+S+QL  DSET +SKGYGF+ F DS  AK+A+EQ+NGFEL GRP+KV  V+ER+D S   SFLD +E E+ GI++    R  LM +LA+  G+G+Q+P   Q +  +S  L                                     + C  LSN+F+P  E +  W+ + ++DV+EE  KHG V+HI VD  S +GN+Y+KC +   A   V + +GR+FAG+ I A  VP   YH +F DS+ A
Sbjct:  143 DNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLMARLAE--GTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTA 521

The following BLAST results are available for this feature:

BLAST of TCONS_00056445 vs. Swiss-Prot (Human)

BLAST of TCONS_00056445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RBM39	1.938e-118	49.87	RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE...	[more]

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TCONS_00056445 (transcript) - C. hemisphaerica