TCONS_00056464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056464
Unique NameTCONS_00056464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056464 ID=TCONS_00056464|Name=TCONS_00056464|organism=Clytia hemisphaerica|type=transcript|length=789bp
TTTTAATATTTCTATTATTTCagtaaataaaatataaataaattgcTCAA
AATGAACAGTGCTGGTCATTGGTTCGAGAGACAAATGTTttgttatttct
ttcttttcatcgtCATCTTCTTCTCGTATAATTGTCATGCTATTGCAAGC
AGTGGTCAACAGATCGAACGAATCCTTTCCAAATCTACGGACAGCCAAAT
GAAGAAATGGTGTGCAAACTTTCCAGACGAATGTTATAAAATATTGCGCA
CTCAAAGCAAACGCACGATCGACCAACGAGCATATCGTCCACACCTTGTC
TTCAGTGAACCGAACAGACGGAAACGATTTCTAATACTACGAAAAGTAAT
CCTCAACAAACGAATCTGAAATTTTCTTTGCCAAGTTTTAATTGGCTTGT
AAAAATGAGAtactttcgagaaaaaaaagatgGACGGAGGAAATTGTTGG
TTGTTGGTGGAAATAGATACAAAAAGAAAagttaatctttttaaaaagca
ttacaattaaattttgattgtaCTCCTTTCATATCGGGATTTGATTTTAA
CTCTTAGCATCCCTTTGCTTTTTCTCTCTGATTCGATATCACAGGGAACA
AAAATcatattcgaattagagaaagattggaatacacgggttgcaaagtt
atatcagtgcagtcaaaacatgtgtgattactcgaaaaaattcacgtgat
tttattcccatgtttaCTTgcttacaacttacagctgataactttattag
tgtcaataaattcgaaccaatcagaaataaatgtcatgt
Run BLAST on NCBI

protein sequence of TCONS_00056464-protein

>TCONS_00056464-protein ID=TCONS_00056464-protein|Name=TCONS_00056464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MNSAGHWFERQMFCYFFLFIVIFFSYNCHAIASSGQQIERILSKSTDSQM
KKWCANFPDECYKILRTQSKRTIDQRAYRPHLVFSEPNRRKRFLILRKVI
LNKRI
Run BLAST on NCBI

transcript from alignment at scaffold_276:5479..6503-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056464 ID=TCONS_00056464|Name=TCONS_00056464|organism=Clytia hemisphaerica|type=transcript|length=1025bp|location=Sequence derived from alignment at scaffold_276:5479..6503- (Clytia hemisphaerica)
TTTTAATATTTCTATTATTTCAGTAAATAAAATATAAATAAATTGCTCAA
AATGAACAGTGCTGGTCATTGGTTCGAGAGACAAATGTTTTGTTATTTCT
TTCTTTTCATCGTCATCTTCTTCTCGTATAATTGTCATGCTATTGCAAGC
AGTGGTCAACAGATCGAACGAATCCTTTCCAAATCTGTAAGTTTTAGCGA
GAGATGGCACATTTTGGCCATCGAATACTTATGTTTTTGTATGGTTTGTT
CTTTTATTAAAAAAACGTGTATTGATATTATTGAGCTAAAAGGGTTGTTA
AGTGATTTCAAATTCAACAGGGAAAACATGATAATCTACACCAAATTGTC
GCAAAAGTATTTTTACTATGGGTGAGTAGAGTAGTAGTGGTAATAAGCAA
ATTCTTTTTCATTCATTTCTAGACGGACAGCCAAATGAAGAAATGGTGTG
CAAACTTTCCAGACGAATGTTATAAAATATTGCGCACTCAAAGCAAACGC
ACGATCGACCAACGAGCATATCGTCCACACCTTGTCTTCAGTGAACCGAA
CAGACGGAAACGATTTCTAATACTACGAAAAGTAATCCTCAACAAACGAA
TCTGAAATTTTCTTTGCCAAGTTTTAATTGGCTTGTAAAAATGAGATACT
TTCGAGAAAAAAAAGATGGACGGAGGAAATTGTTGGTTGTTGGTGGAAAT
AGATACAAAAAGAAAAGTTAATCTTTTTAAAAAGCATTACAATTAAATTT
TGATTGTACTCCTTTCATATCGGGATTTGATTTTAACTCTTAGCATCCCT
TTGCTTTTTCTCTCTGATTCGATATCACAGGGAACAAAAATCATATTCGA
ATTAGAGAAAGATTGGAATACACGGGTTGCAAAGTTATATCAGTGCAGTC
AAAACATGTGTGATTACTCGAAAAAATTCACGTGATTTTATTCCCATGTT
TACTTGCTTACAACTTACAGCTGATAACTTTATTAGTGTCAATAAATTCG
AACCAATCAGAAATAAATGTCATGT

Coding sequence (CDS) from alignment at scaffold_276:5479..6503-

>TCONS_00056464 ID=TCONS_00056464|Name=TCONS_00056464|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_276:5479..6503- (Clytia hemisphaerica)
ACGGACAGCCAAATGAAGAAATGGTGTGCAAACTTTCCAGACGAATGTTA
TAAAATATTGCGCACTCAAAGCAAACGCACGATCGACCAACGAGCATATC
GTCCACACCTTGTCTTCAGTGAACCGAACAGACGGAAACGATTTCTAATA
CTACGAAAAGTAATCCTCAACAAACGAATCTGAATGAACAGTGCTGGTCA
TTGGTTCGAGAGACAAATGTTTTGTTATTTCTTTCTTTTCATCGTCATCT
TCTTCTCGTATAATTGTCATGCTATTGCAAGCAGTGGTCAACAGATCGAA
CGAATCCTTTCCAAATCTACGGACAGCCAAATGAAGAAATGGTGTGCAAA
CTTTCCAGACGAATGTTATAAAATATTGCGCACTCAAAGCAAACGCACGA
TCGACCAACGAGCATATCGTCCACACCTTGTCTTCAGTGAACCGAACAGA
CGGAAACGATTTCTAATACTACGAAAAGTAATCCTCAACAAACGAATCTG
AATGAACAGTGCTGGTCATTGGTTCGAGAGACAAATGTTTTGTTATTTCT
TTCTTTTCATCGTCATCTTCTTCTCGTATAATTGTCATGCTATTGCAAGC
AGTGGTCAACAGATCGAACGAATCCTTTCCAAATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035578XLOC_035578Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056464-proteinTCONS_00056464-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056464-exon-scaffold_276-1575043694:6318..6503TCONS_00056464-exon-scaffold_276-1575043694:6318..6503Clytia hemisphaericaexon
TCONS_00056464-exon-scaffold_276-1575043694:5479..6081TCONS_00056464-exon-scaffold_276-1575043694:5479..6081Clytia hemisphaericaexon
TCONS_00056464-exon-scaffold_276-1510915933:6318..6503TCONS_00056464-exon-scaffold_276-1510915933:6318..6503Clytia hemisphaericaexon
TCONS_00056464-exon-scaffold_276-1510915933:5479..6081TCONS_00056464-exon-scaffold_276-1510915933:5479..6081Clytia hemisphaericaexon
TCONS_00056464-exon-scaffold_276-1491911889:6318..6503TCONS_00056464-exon-scaffold_276-1491911889:6318..6503Clytia hemisphaericaexon
TCONS_00056464-exon-scaffold_276-1491911889:5479..6081TCONS_00056464-exon-scaffold_276-1491911889:5479..6081Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:5479..6503 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.124255	0	0.29095	0	0	0.341808	0	1.76787	2.04651	1.24391	2.44427	12.7963	6.76546	0.42288	0.903235	2.7081	4.10483	34.8676	32.001	12.3581	10.6454	3.52011	6.77349	5.71363	6.04343	1.18371	1.99209	0.372336	0.235761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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