TCONS_00056471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056471
Unique NameTCONS_00056471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056471 ID=TCONS_00056471|Name=TCONS_00056471|organism=Clytia hemisphaerica|type=transcript|length=785bp
CGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCC
TCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACTTCTTCTGT
TGGTTTGATTTCTTCTGAAGTTTCCTCTTCGATTTTGGACACAAGTTCTT
CCACTGTTTCTGAAACTTCTTCAGTTGGCTTGCTTTCTTCTGAAGTTTCC
TCTTCGACTTTGGACATAAGTTCTTCGACTGTTTGTGAAATTTCTTCTGT
TGGCTTGCTTTCTTCTGAAGTTTCCTGTTCAACTTTAGAGACAAATTCTT
CGACTGTTTGTGAAACTTCTTCTGTTGGCTCACTTTCATCAGATGTTCCC
TCTTCGACTTTGGACACAACTTCTTCGACTGTTTGTGAAACTTCTTCACT
TGTTTGAGGAACATCCTCAATTTGTTTGCTTTCTTCAGAAATTCCAGCTT
TCATTCTGGAATCAAGTTCTTCAACTTTTTGAGGGACATTAACCTTAGCA
TCGGTTTCTTCAACATGGATACCATTATTTGAAGGCGTATTTTCTCCTTG
GTTTTCTTGCTCTAACGAGTCCTCCACCTTTGAAAAGAGGTCTTCCAAAA
CTTCGTTCACTGTGGAATCTAGAGAAGCCCTTTCTATCTCAGCTTCTTCT
Gcagcaaatttttgcttttctgcttcttgctcagcaagtctttgcttttc
tgcttcttcttcGGCGAGTCTCTGCCTTTCTGCTTCTTCAGCAGCAAttc
tttgcttttctgcttcttctttAGCGAGTCTTTGC
Run BLAST on NCBI

transcript from alignment at scaffold_276:154084..155981-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056471 ID=TCONS_00056471|Name=TCONS_00056471|organism=Clytia hemisphaerica|type=transcript|length=1898bp|location=Sequence derived from alignment at scaffold_276:154084..155981- (Clytia hemisphaerica)
CGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCC
TCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACATCTTCTGC
TGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTT
CGACTGTTTGTGAAACATCTTCTGCTGGCTTGCTTTCTTCTGAAGTTTCC
TCTTCGACTTTAGAGACAAGTTCTTCGACTGTTTGTGAAACATCTTCTGC
TGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTT
CGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCC
TCTTCGATTTTAGAGACAGGTTCTTCGACTGTTTGTGAAACTTCTTCTGT
CGGCTTACTTTCTTCTGAAGTTTCCTCTTCGACTTTAGCGACAAGTTCTT
CGACTGTTTGTGAAACATCTTCTGTTGGCTTGCTTTCTTCAGAAGTTTCC
TCTTCGACTTTAGCGACAAGTTCTTCGACTGTTTGTGAAACATCTTCTGT
TGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTT
CGACTGTTTGTGAAACTTCTTCCGTTGGCTTACTTTCTTCAGAAGTTTCC
TCTTCGACTTTAAAGACAAGTTCTTCGACTGTTTGGGAAACTTCTTTTGT
TGGTTTGCTTTCTTCAAAAGTTTCCTCTTCGACTTTAGAGACAAGTTCTT
CGACTGTTTGAGAAACTTCTTCTGTTGGTTTGATTTCTTCTGAAGTTTCC
TCTTCGATTTTGGACACAAGTTCTTCCACTGTTTCTGAAACTTCTTCAGT
TGGCTTGCTTTCTTCTGAAGTTTCCTCTTCGACTTTGGACATAAGTTCTT
CGACTGTTTGTGAAATTTCTTCTGTTGGCTTGCTTTCTTCTGAAGTTTCC
TGTTCAACATTAGAGACAAGTTCTTCGACTGTTTGTGAAACTTCTTCCGT
TGACTTGCTTTCTTCTGAAGTTTCCTCTTCAACATTAGACACAAGTTCAT
CGACTGTTTGTGAAACTTCTTCATCTGTTTGAAAAACTTTTTCTCTTGGT
TTGCTTTCTTCAGAAGTTTCTAAGTCGACTTTGGACACGAGTTCTTCGAC
TGTTTCTGAAACTTTTTCAACTGTTTGTGAAATTTCTTCTGTTGGCTTGC
TTTCTTCTAAAGTTTCCTCTTCAACTTTAAAGAGAAGTTCTTCAACTGTT
TGTGAAACCACTTCATCTGCTTGAGGAACATCCTCATTTGGTTTGCTTTC
TTCAGAAGTTTCTTCTTCGACTTTGGACACAAGTTCTTCGACTGCTTCTG
AAACCTCTTCAGTTGGTTTGCTTTCCTCAGATATTTCTTCTTCGACTTTA
GAGACAAATTCTTCGACTGTTTGTGAAACTTCTTCTGTTGGCTCACTTTC
ATCAGATGTTCCCTCTTCGACTTTGGACACAACTTCTTCGACTGTTTGTG
AAACTTCTTCACTTGTTTGAGGAACATCCTCAATTTGTTTGCTTTCTTCA
GAAATTCCAGCTTTCATTCTGGAATCAAGTTCTTCAACTTTTTGAGGGAC
ATTAACCTTAGCATCGGTTTCTTCAACATGGATACCATTATTTGAAGGCG
TATTTTCTCCTTGGTTTTCTTGCTCTAACGAGTCCTCCACCTTTGAAAAG
AGGTCTTCCAAAACTTCGTTCACTGTGGAATCTAGAGAAGCCCTTTCTAT
CTCAGCTTCTTCTGCAGCAAATTTTTGCTTTTCTGCTTCTTGCTCAGCAA
GTCTTTGCTTTTCTGCTTCTTCTTCGGCGAGTCTCTGCCTTTCTGCTTCT
TCAGCAGCAATTCTTTGCTTTTCTGCTTCTTCTTTAGCGAGTCTTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035582XLOC_035582Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056471-exon-scaffold_276-1575043694:155891..155981TCONS_00056471-exon-scaffold_276-1575043694:155891..155981Clytia hemisphaericaexon
TCONS_00056471-exon-scaffold_276-1575043694:155024..155215TCONS_00056471-exon-scaffold_276-1575043694:155024..155215Clytia hemisphaericaexon
TCONS_00056471-exon-scaffold_276-1575043694:154084..154585TCONS_00056471-exon-scaffold_276-1575043694:154084..154585Clytia hemisphaericaexon
TCONS_00056471-exon-scaffold_276-1510915933:155891..155981TCONS_00056471-exon-scaffold_276-1510915933:155891..155981Clytia hemisphaericaexon
TCONS_00056471-exon-scaffold_276-1510915933:155024..155215TCONS_00056471-exon-scaffold_276-1510915933:155024..155215Clytia hemisphaericaexon
TCONS_00056471-exon-scaffold_276-1510915933:154084..154585TCONS_00056471-exon-scaffold_276-1510915933:154084..154585Clytia hemisphaericaexon
TCONS_00056471-exon-scaffold_276-1491911889:155891..155981TCONS_00056471-exon-scaffold_276-1491911889:155891..155981Clytia hemisphaericaexon
TCONS_00056471-exon-scaffold_276-1491911889:155024..155215TCONS_00056471-exon-scaffold_276-1491911889:155024..155215Clytia hemisphaericaexon
TCONS_00056471-exon-scaffold_276-1491911889:154084..154585TCONS_00056471-exon-scaffold_276-1491911889:154084..154585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:154084..155981 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.93323e-06	0	0	0	7.86938	2.77084	2.63448	3.59258	0	0	1.69589	0	0	0	0	0	0	0	0	0	0	0	0	0	2.65863	1.98022	0	0	0	0.153357
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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