TCONS_00056556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056556
Unique NameTCONS_00056556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056556 ID=TCONS_00056556|Name=TCONS_00056556|organism=Clytia hemisphaerica|type=transcript|length=230bp
CCCATATCAATATATACTGTCTCTCTGTCTAAATATTTGCTTCCATCTAA
AATTTGTCTCCATCATTCGATTTGCAGTGTTATAAAAAAGGATAGTATTT
TCAAATATTCCTTTATCCatgttttggtaaattttttagTACCACACGAG
TATGCAAATTCAATAGAACGGGAAGGACTTATTAGTAGTACTTTAGATGA
AAAGAGTTCAGATATCATATTTATATTTTC
Run BLAST on NCBI

transcript from alignment at scaffold_276:668758..668987

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056556 ID=TCONS_00056556|Name=TCONS_00056556|organism=Clytia hemisphaerica|type=transcript|length=230bp|location=Sequence derived from alignment at scaffold_276:668758..668987 (Clytia hemisphaerica)
GAAAATATAAATATGATATCTGAACTCTTTTCATCTAAAGTACTACTAAT
AAGTCCTTCCCGTTCTATTGAATTTGCATACTCGTGTGGTActaaaaaat
ttaccaaaacatGGATAAAGGAATATTTGAAAATACTATCCTTTTTTATA
ACACTGCAAATCGAATGATGGAGACAAATTTTAGATGGAAGCAAATATTT
AGACAGAGAGACAGTATATATTGATATGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035636XLOC_035636Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056556-exon-scaffold_276-1491911889:668758..668987TCONS_00056556-exon-scaffold_276-1491911889:668758..668987Clytia hemisphaericaexon
TCONS_00056556-exon-scaffold_276-1510915933:668758..668987TCONS_00056556-exon-scaffold_276-1510915933:668758..668987Clytia hemisphaericaexon
TCONS_00056556-exon-scaffold_276-1575043694:668758..668987TCONS_00056556-exon-scaffold_276-1575043694:668758..668987Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_276supercontigscaffold_276:668758..668987 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.11252	0	4.7838	5.85026	8.54655	5.628	9.50592	5.08533	5.34054	4.41008	0	8.44156	6.32237	0.729538	8.99669	6.43655	5.55051	6.50182	4.49131	3.52487	12.255	13.4495	4.84435	6.60632	4.53624	8.09697	5.79337	6.18284	4.68946	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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