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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056577 ID=TCONS_00056577|Name=TCONS_00056577|organism=Clytia hemisphaerica|type=transcript|length=2171bpRun BLAST on NCBI protein sequence of TCONS_00056577-protein >TCONS_00056577-protein ID=TCONS_00056577-protein|Name=TCONS_00056577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp MADNFGTEVNLSDEQTGTLPPKTSLNVEFMKRTDSSASSTSSWDLLNNEPRun BLAST on NCBI transcript from alignment at scaffold_277:284751..296590+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056577 ID=TCONS_00056577|Name=TCONS_00056577|organism=Clytia hemisphaerica|type=transcript|length=11840bp|location=Sequence derived from alignment at scaffold_277:284751..296590+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_277:284751..296590+ >TCONS_00056577 ID=TCONS_00056577|Name=TCONS_00056577|organism=Clytia hemisphaerica|type=CDS|length=8856bp|location=Sequence derived from alignment at scaffold_277:284751..296590+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00056577 vs. Swiss-Prot (Human)
Match: YIPF3 (Protein YIPF3 OS=Homo sapiens GN=YIPF3 PE=1 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.908e-66 Identity = 118/222 (53.15%), Postives = 158/222 (71.17%), Query Frame = 1
Query: 367 METMRSKIVDEVKGQVWAAGTSHARRFFDLYSNIDNLRPYFDVEPRDVLVRLGKSLVPIKPVK-PQTVEGELYGPIMVVFTLIALLLFSMKHSGHTVQEGTLMGTAIGVCFGYWLGGSSFYYFIAYICNSHITLLQIVSLTGYALFAHCICIFLATITHDLTHXXXXXXXXXXXXXXXXRMLGVYVSRTWSKKNGLIIGGVVAFFHLMFLIYLHYAYHSTYE 1029
M+ + ++ +V Q+W AG A R F LY+NID LRPYFDVEP V RL +S++PIK V PQ + GELYGP+M+VFTL+A+LL MK S ++EGTLMGTAIG CFGYWLG SSF YF+AY+CN+ IT+LQ+++L GY LF HCI +F+ H H +F++ L++GGLS+LRM+ V VSRT L++ G +A H++FL+YLH+AYH E
Sbjct: 82 MKGFKGQLSRQVADQMWQAGKRQASRAFSLYANIDILRPYFDVEPAQVRSRLLESMIPIKMVNFPQKIAGELYGPLMLVFTLVAILLHGMKTSDTIIREGTLMGTAIGTCFGYWLGVSSFIYFLAYLCNAQITMLQMLALLGYGLFGHCIVLFITYNIH--LHALFYLFWLLVGGLSTLRMVAVLVSRTVGPTQRLLLCGTLAALHMLFLLYLHFAYHKVVE 301 The following BLAST results are available for this feature:
BLAST of TCONS_00056577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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