TCONS_00056617 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056617
Unique NameTCONS_00056617
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length943

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056617 ID=TCONS_00056617|Name=TCONS_00056617|organism=Clytia hemisphaerica|type=transcript|length=943bp
AAACGAAAcaacacgatttttttttttacaccgtaagttcaaattttaaa
tttgacctaAACTATGCATTTGTCAATAATTCTGTCAcaattttatttgg
tttattcTCAATGGTATTCGGGTGAAAACgaaaaacaacaaagaacaaca
aGTCTTGATACAGAGGGTGTATCAAAACCATTTTCTGCGACCTCAGCAGT
CCAATGTATTTTAGAATGCAAAGAGAATTCGATGAAAAGTTATTTTGTTG
AGTACGTTAATGAATGTTATTGCTTGATAAACAAAACACAAACCGTAATC
AAAGACGCCAGCGATGATGGTATACTATACAATGTAAAGCATTTTCAGAG
TTGTCAAGAAGTCAAAGACACATGCATTGATTGTGAATCTGATATTTATA
CCATGGGGACAAGTTATGGTGAATCAGTCAAAGTTTTTTGTATGATTCCA
AGGGATAAAGGTACTGAATATGCTTTCATGAATGGAACAACCGTCAATTC
TCAATCGATCTTAATGGCTAATCCGGGTGAAACTTTCCCTTTTGCTTGGC
GTGTCGGTGTAGTATACCTTGGTGGAGTTGAAGATGAAATATTCTATCCT
TATGAAATAATTACCTGGGAAAACACAGTCGGACATGTGGACATTCATCA
GTGGATTGGTTTTCAAGATGCTGCATTCGCTAACAAATTACTCCATGTTG
AATGTTGGGTCAAGTTTGTCGGCTCAGTACCAGAGAGAAGTGATCAGTTC
GGAATCAAAGTGTATGGTGTTGTTTACAATGGGTGGGTTGTTGATTGCCA
AGCAGATGAATGGTGCAAAGTTGCTTTGAATATCCAAAACATTAATTATG
GTGATTTTAATTATGTCATTATCATTTTTGATTCTATTAATCATCAACAA
ATCGTGAGAATTGCACATTTCACTGTGACTATATTGTattgaa
Run BLAST on NCBI

protein sequence of TCONS_00056617-protein

>TCONS_00056617-protein ID=TCONS_00056617-protein|Name=TCONS_00056617-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MHLSIILSQFYLVYSQWYSGENEKQQRTTSLDTEGVSKPFSATSAVQCIL
ECKENSMKSYFVEYVNECYCLINKTQTVIKDASDDGILYNVKHFQSCQEV
KDTCIDCESDIYTMGTSYGESVKVFCMIPRDKGTEYAFMNGTTVNSQSIL
MANPGETFPFAWRVGVVYLGGVEDEIFYPYEIITWENTVGHVDIHQWIGF
QDAAFANKLLHVECWVKFVGSVPERSDQFGIKVYGVVYNGWVVDCQADEW
CKVALNIQNINYGDFNYVIIIFDSINHQQIVRIAHFTVTILY
Run BLAST on NCBI

transcript from alignment at scaffold_277:339929..341830-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056617 ID=TCONS_00056617|Name=TCONS_00056617|organism=Clytia hemisphaerica|type=transcript|length=1902bp|location=Sequence derived from alignment at scaffold_277:339929..341830- (Clytia hemisphaerica)
AAACGAAACAACACGATTTTTTTTTTTACACCGTAAGTTCAAATTTTAAA
TTTGACCTAAACTATGCATTTGTCAATAATTCTGTCACAATTTTATTTGG
TTTATTCTCAATGGTATTCGGGTGAAAACGAAAAACAACAAAGAACAACA
AGTCTTGATACAGAGGGTGTATCAAAACCATTTTCTGCGACCTCAGCAGT
CCAATGTATTTTAGAATGCAAAGAGAATTCGATGAAAAGTTATTTTGTTG
AGTACGTTAATGAATGTTATTGCTTGATAAACAAAACACAAACCGTAATC
AAAGACGCCAGCGATGATGGTATACTATACAATGTAAAGGTAAGCTCAAA
ATAACCCTGCCTCACAGCCCCGCTGGAATATTTCCTCTCCTCAATGGGGA
TTAAAATTTCCAATTCCAATTGGGAAAGAAAATTTATTGTTTTTAGCTTG
AAAAAGCTGATGGTTTTGAAGTGCAATATTTTATTTACAAATTCAATTTC
CATTGGGGATATAATCATGGGGTAGTTTTCCAGTGTGGGGTTGAAATTTA
GGGCACTTTTACAACGGAGACGATTTAAGGCCAATTCTTCCGGTATGGTA
GGGGTTCTAACGGGTCTGTGACACAAAGGTCGTGTTACAAAGCTTCCTCT
GTTAGATGGACTTTATATGGAAGATATTTTTGACATTTAGAGTCAGTTGG
GAAAAAGAAAATTAATGATTAGTCCATCTAACATAGAGAAAAATCCATGA
TGTTCTTGAGGGACTTGGTTTTCAATTTAATTTTGGTTTCAAACCTCTTT
TGTTTTATAACCCTTTGAGCTGTTTCAAGCCTAACTTTTTTGCCTTTACA
AAGTGCCTCTTACCTCAGTCTTAGATTCAAATATCTTTCTTTATCTTTTC
AGCATTTTCAGAGTTGTCAAGAAGTCAAAGACACATGCATTGATTGTGAA
TCTGATATTTATACCATGGGGACAAGTTATGGTGAATCAGTCAAAGTTTT
TTGTATGATTCCAAGGGATAAAGGTAAGGATCCGACTGAATAATACATAA
CAACCCTGTATCAGTGCCACGTGTGTTATGATAAGATGGAAAATGCCTTG
CTTATAAAATCGGCCCATAAATCTTTGTAGATTGTGTCCGTGGATTGAAT
CATTTCAACATAGAATCCTTTCATTTTCATGTATTCAGTTAAAACTGCAT
AATATGTCAACCCTACATTACAAAAACTTTCCAGATTTTTCACTGCTTCC
ACCTTAACGGGATTGCCATTGTTTGAGTAGGAATACTAGAATTCAAGTAT
ACTGACACTAACGCCAAAATTTAACATTCCAGCCCTGAGGATTGCGAGGC
TTCGGTCTAACACATCTTCAAAGTTGAGTCCTTCCAATTTCATTATGTTA
TGCTCATCATTTCATTTAGGTACTGAATATGCTTTCATGAATGGAACAAC
CGTCAATTCTCAATCGATCTTAATGGCTAATCCGGGTGAAACTTTCCCTT
TTGCTTGGCGTGTCGGTGTAGTATACCTTGGTGGAGTTGAAGATGAAATA
TTCTATCCTTATGAAATAATTACCTGGGAAAACACAGTCGGACATGTGGA
CATTCATCAGTGGATTGGTTTTCAAGATGCTGCATTCGCTAACAAATTAC
TCCATGTTGAATGTTGGGTCAAGTTTGTCGGCTCAGTACCAGAGAGAAGT
GATCAGTTCGGAATCAAAGTGTATGGTGTTGTTTACAATGGGTGGGTTGT
TGATTGCCAAGCAGATGAATGGTGCAAAGTTGCTTTGAATATCCAAAACA
TTAATTATGGTGATTTTAATTATGTCATTATCATTTTTGATTCTATTAAT
CATCAACAAATCGTGAGAATTGCACATTTCACTGTGACTATATTGTATTG
AA

Coding sequence (CDS) from alignment at scaffold_277:339929..341830-

>TCONS_00056617 ID=TCONS_00056617|Name=TCONS_00056617|organism=Clytia hemisphaerica|type=CDS|length=2637bp|location=Sequence derived from alignment at scaffold_277:339929..341830- (Clytia hemisphaerica)
GTACTGAATATGCTTTCATGAATGGAACAACCGTCAATTCTCAATCGATC
TTAATGGCTAATCCGGGTGAAACTTTCCCTTTTGCTTGGCGTGTCGGTGT
AGTATACCTTGGTGGAGTTGAAGATGAAATATTCTATCCTTATGAAATAA
TTACCTGGGAAAACACAGTCGGACATGTGGACATTCATCAGTGGATTGGT
TTTCAAGATGCTGCATTCGCTAACAAATTACTCCATGTTGAATGTTGGGT
CAAGTTTGTCGGCTCAGTACCAGAGAGAAGTGATCAGTTCGGAATCAAAG
TGTATGGTGTTGTTTACAATGGGTGGGTTGTTGATTGCCAAGCAGATGAA
TGGTGCAAAGTTGCTTTGAATATCCAAAACATTAATTATGGTGATTTTAA
TTATGTCATTATCATTTTTGATTCTATTAATCATCAACAAATCGTGAGAA
TTGCACATTTCACTGTGACTATATTGTATTGACATTTTCAGAGTTGTCAA
GAAGTCAAAGACACATGCATTGATTGTGAATCTGATATTTATACCATGGG
GACAAGTTATGGTGAATCAGTCAAAGTTTTTTGTATGATTCCAAGGGATA
AAGATGCATTTGTCAATAATTCTGTCACAATTTTATTTGGTTTATTCTCA
ATGGTATTCGGGTGAAAACGAAAAACAACAAAGAACAACAAGTCTTGATA
CAGAGGGTGTATCAAAACCATTTTCTGCGACCTCAGCAGTCCAATGTATT
TTAGAATGCAAAGAGAATTCGATGAAAAGTTATTTTGTTGAGTACGTTAA
TGAATGTTATTGCTTGATAAACAAAACACAAACCGTAATCAAAGACGCCA
GCGATGATGGTATACTATACAATGTAAAGGTACTGAATATGCTTTCATGA
ATGGAACAACCGTCAATTCTCAATCGATCTTAATGGCTAATCCGGGTGAA
ACTTTCCCTTTTGCTTGGCGTGTCGGTGTAGTATACCTTGGTGGAGTTGA
AGATGAAATATTCTATCCTTATGAAATAATTACCTGGGAAAACACAGTCG
GACATGTGGACATTCATCAGTGGATTGGTTTTCAAGATGCTGCATTCGCT
AACAAATTACTCCATGTTGAATGTTGGGTCAAGTTTGTCGGCTCAGTACC
AGAGAGAAGTGATCAGTTCGGAATCAAAGTGTATGGTGTTGTTTACAATG
GGTGGGTTGTTGATTGCCAAGCAGATGAATGGTGCAAAGTTGCTTTGAAT
ATCCAAAACATTAATTATGGTGATTTTAATTATGTCATTATCATTTTTGA
TTCTATTAATCATCAACAAATCGTGAGAATTGCACATTTCACTGTGACTA
TATTGTATTGACATTTTCAGAGTTGTCAAGAAGTCAAAGACACATGCATT
GATTGTGAATCTGATATTTATACCATGGGGACAAGTTATGGTGAATCAGT
CAAAGTTTTTTGTATGATTCCAAGGGATAAAGATGCATTTGTCAATAATT
CTGTCACAATTTTATTTGGTTTATTCTCAATGGTATTCGGGTGAAAACGA
AAAACAACAAAGAACAACAAGTCTTGATACAGAGGGTGTATCAAAACCAT
TTTCTGCGACCTCAGCAGTCCAATGTATTTTAGAATGCAAAGAGAATTCG
ATGAAAAGTTATTTTGTTGAGTACGTTAATGAATGTTATTGCTTGATAAA
CAAAACACAAACCGTAATCAAAGACGCCAGCGATGATGGTATACTATACA
ATGTAAAGGTACTGAATATGCTTTCATGAATGGAACAACCGTCAATTCTC
AATCGATCTTAATGGCTAATCCGGGTGAAACTTTCCCTTTTGCTTGGCGT
GTCGGTGTAGTATACCTTGGTGGAGTTGAAGATGAAATATTCTATCCTTA
TGAAATAATTACCTGGGAAAACACAGTCGGACATGTGGACATTCATCAGT
GGATTGGTTTTCAAGATGCTGCATTCGCTAACAAATTACTCCATGTTGAA
TGTTGGGTCAAGTTTGTCGGCTCAGTACCAGAGAGAAGTGATCAGTTCGG
AATCAAAGTGTATGGTGTTGTTTACAATGGGTGGGTTGTTGATTGCCAAG
CAGATGAATGGTGCAAAGTTGCTTTGAATATCCAAAACATTAATTATGGT
GATTTTAATTATGTCATTATCATTTTTGATTCTATTAATCATCAACAAAT
CGTGAGAATTGCACATTTCACTGTGACTATATTGTATTGACATTTTCAGA
GTTGTCAAGAAGTCAAAGACACATGCATTGATTGTGAATCTGATATTTAT
ACCATGGGGACAAGTTATGGTGAATCAGTCAAAGTTTTTTGTATGATTCC
AAGGGATAAAGATGCATTTGTCAATAATTCTGTCACAATTTTATTTGGTT
TATTCTCAATGGTATTCGGGTGAAAACGAAAAACAACAAAGAACAACAAG
TCTTGATACAGAGGGTGTATCAAAACCATTTTCTGCGACCTCAGCAGTCC
AATGTATTTTAGAATGCAAAGAGAATTCGATGAAAAGTTATTTTGTTGAG
TACGTTAATGAATGTTATTGCTTGATAAACAAAACACAAACCGTAATCAA
AGACGCCAGCGATGATGGTATACTATACAATGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035655XLOC_035655Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056617-proteinTCONS_00056617-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056617-exon-scaffold_277-1575043694:341492..341830TCONS_00056617-exon-scaffold_277-1575043694:341492..341830Clytia hemisphaericaexon
TCONS_00056617-exon-scaffold_277-1575043694:340808..340928TCONS_00056617-exon-scaffold_277-1575043694:340808..340928Clytia hemisphaericaexon
TCONS_00056617-exon-scaffold_277-1575043694:339929..340411TCONS_00056617-exon-scaffold_277-1575043694:339929..340411Clytia hemisphaericaexon
TCONS_00056617-exon-scaffold_277-1510915933:341492..341830TCONS_00056617-exon-scaffold_277-1510915933:341492..341830Clytia hemisphaericaexon
TCONS_00056617-exon-scaffold_277-1510915933:340808..340928TCONS_00056617-exon-scaffold_277-1510915933:340808..340928Clytia hemisphaericaexon
TCONS_00056617-exon-scaffold_277-1510915933:339929..340411TCONS_00056617-exon-scaffold_277-1510915933:339929..340411Clytia hemisphaericaexon
TCONS_00056617-exon-scaffold_277-1491911889:341492..341830TCONS_00056617-exon-scaffold_277-1491911889:341492..341830Clytia hemisphaericaexon
TCONS_00056617-exon-scaffold_277-1491911889:340808..340928TCONS_00056617-exon-scaffold_277-1491911889:340808..340928Clytia hemisphaericaexon
TCONS_00056617-exon-scaffold_277-1491911889:339929..340411TCONS_00056617-exon-scaffold_277-1491911889:339929..340411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_277supercontigscaffold_277:339929..341830 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0651822	0.0515078	0.497136	0.465413	0	0	0	0.0321907	6.20417	5.8088	0.686152	0.500716	0.108854	0.0743814	9.35134	12.3663	0	0.0683839	0	0	0.155685	0	0	0	0.0536479	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056617 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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