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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056650 ID=TCONS_00056650|Name=TCONS_00056650|organism=Clytia hemisphaerica|type=transcript|length=3372bpRun BLAST on NCBI protein sequence of Zinc finger UBP type protein >TCONS_00056650-protein ID=TCONS_00056650-protein|Name=Zinc finger UBP type protein|organism=Clytia hemisphaerica|type=polypeptide|length=813bp MDVLSEELKLKLTKYNYTIPQGGNTVYKDECIYCFDGQESDNGMNVCLSTRun BLAST on NCBI transcript from alignment at scaffold_279:68630..142216+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00056650 ID=TCONS_00056650|Name=TCONS_00056650|organism=Clytia hemisphaerica|type=transcript|length=73587bp|location=Sequence derived from alignment at scaffold_279:68630..142216+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_279:68630..142216+ >TCONS_00056650 ID=TCONS_00056650|Name=TCONS_00056650|organism=Clytia hemisphaerica|type=CDS|length=51282bp|location=Sequence derived from alignment at scaffold_279:68630..142216+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00056650 vs. Swiss-Prot (Human)
Match: UBP5 (Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5 PE=1 SV=2) HSP 1 Score: 788.875 bits (2036), Expect = 0.000e+0 Identity = 410/862 (47.56%), Postives = 575/862 (66.71%), Query Frame = 1
Query: 190 MDVLSEELKLKLTKYNYTIPQGGNTVYKDECIYCFDGQESDNGMNVCLSTLFGVSQKFLQLFVKKEGKTVFLNFXXXXXXXXXXXXX-----XXXXXTKMAIGVEGGFDVEKDKVEY-ECVNTLIVTDNEGKITXXXXXXXXXXXXXXQCCIAGVIAHQGASMQENVQAWE-EKRIVSKYALNLQQLDNGVKIPPSGWKCALCDLTQNLWLNLTDGTILCGRKFWDGSGGNNHAVEYYEQTKYPLAVKLGTITAEGGDVYSYDEDDMVEDPKLKEHLLHFGINIALLEKTDKTMTELEVEANLSLKAEWDTIQEAGKKLKPLNGPGYTGMINLGNSCYMNSIMQILFSMTEFQQKYANCSDQIFQNEKGDPTSSFNVQTAKLGAGLLSGDYSQKQTNEQG------EEDDGTQGVRPQMFKSLIGRGHAEFSTNHQQDAQEFFLHFMDKMEKEERNEDVKLKKLFMFQLEDRVQCTSSQQVAYKKREEMMISLPIPLDKATNIGEFKAFEERKKQAETNKERIPTEEIVRLKIPMSECLNEFTADESVEQFYSTAIKRKITALKRTRFATFPDYLVIQLRRFTVGDDWVPKKLDVSVEMEEMIDLNSLRGNGLQSNETQLPXXXXX---------------------------XXXXXVEINEGFVAQLMDMGFPLEACKKAVHYTNNQGVEAAMNWVFEHSQDVDFASPLQLXXXXXXXXXXXXFTPNIES-VSMLMAMGFTDQQAHKALKKTNNNLEAAAEWMFSNPDELN--TSMEVDE-PAAESSLTENT-----MHDGNGKYKLMGFASHMGTSTSCGHYVCHIYKEGRWVIYNDRKVAESETPPRDLGYIYFYKRI 2628
M LSEE L + +P+ G+ V+KDEC + FD ES+ G+ +C++T G +++++ K G+ V+L+ ++ + + K+PT++AIGVEGGFD+ ++K E E V +I+ D + L + + + +++ AS ++ VQAW+ E R VSK+A +L+QLDN +IPP GWKC+ CD+ +NLWLNLTDG+ILCGR+++DGSGGNNHAVE+Y +T YPLAVKLGTIT +G DVYSYDEDDMV DP L EHL HFGI++ ++KTDKTMTELE++ N + EW+ IQE+G LKPL GPGYTG+ NLGNSCY+NS++Q+LFS+ +FQ+KY + ++IFQN DPT F+ Q AKLG GLLSG+YS K E G E+ + G+ P+MFK+LIG+GH EFSTN QQDAQEFFLH ++ +E+ R+ + ++F F +E++++C ++++V Y +R + ++ LP+P+D A N E +EE+K+QAE K +P E+VR ++P S CL + A E V+ F+STA++ K A+K TRFA+FPDYLVIQ+++FT G DWVPKKLDVS+EM E +D++ LRG GLQ E +LPD T+ ++E + QL++MGFP++AC+KAV+YT N G EAAMNWV H D DFA+PL L G + P E V+ +++MGF+ QA KAL+ TNN+LE A +W+FS+ D+L+ +M++ E +A S++E+ + DG GKY+L F SHMGTST CGHYVCHI KEGRWVIYND+KV SE PP+DLGYIYFY+R+
Sbjct: 1 MAELSEEALLSVLP-TIRVPKAGDRVHKDECAFSFDTPESEGGLYICMNTFLGFGKQYVERHFNKTGQRVYLHLRRTRRPKEEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDYLEIARDGLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARIPPCGWKCSKCDMRENLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGADVYSYDEDDMVLDPSLAEHLSHFGIDMLKMQKTDKTMTELEIDMNQRI-GEWELIQESGVPLKPLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYS-KPVPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFLHLINMVERNCRSSE-NPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQAEEEKMALP--ELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPDIAPPLVTPDEPKGSLGFYGNEDEDSFCSPHFSSPTSPMLDESVIIQLVEMGFPMDACRKAVYYTGNSGAEAAMNWVMSHMDDPDFANPLILPGSSGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLERAVDWIFSHIDDLDAEAAMDISEGRSAADSISESVPVGPKVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCASEKPPKDLGYIYFYQRV 856 The following BLAST results are available for this feature:
BLAST of TCONS_00056650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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