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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056658 ID=TCONS_00056658|Name=TCONS_00056658|organism=Clytia hemisphaerica|type=transcript|length=451bp
cgctaatcagagatgtccgccttttagagcgTCCGTTGATTCGAGATTTA
ACTGTACCATGTGCTACACAATGCCCCGCATGTTACATCTCGTTTCAGTA
AAACGCAGAAACACTTCAGAAAAATAGAAGAGAAAATGGAATTAAAAATA
AAGCAAATCTTACACATCACATCAGCTATCATTTTCTTCGTATGTTTATC
ATTGAACATTGTGGCTCTCTTTGGAGCTTCATGGATCACCTTTAACGAAA
GTACAAAGCACTTCAAAGACCATCAAGCATATTTTGGAATCACGCGTACG
TGTCGGAGTATGTCCGAAAAACGGTATTGTAAATACCGGAAGGATATCTT
CACATTCAAGTATTTGACCTATAAAGAAGTGATCTTGTTGGATGTGATTT
TCCTTCAATTTGTTTTATCGTCAATTTGCTTGCTAGTGGCGTTGAATTGC
A Run BLAST on NCBI protein sequence of TCONS_00056658-protein >TCONS_00056658-protein ID=TCONS_00056658-protein|Name=TCONS_00056658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MELKIKQILHITSAIIFFVCLSLNIVALFGASWITFNESTKHFKDHQAYF
GITRTCRSMSEKRYCKYRKDIFTFKYLTYKEVILLDVIFLQFVLSSICLL
VALNC Run BLAST on NCBI transcript from alignment at scaffold_279:144267..146419- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056658 ID=TCONS_00056658|Name=TCONS_00056658|organism=Clytia hemisphaerica|type=transcript|length=2153bp|location=Sequence derived from alignment at scaffold_279:144267..146419- (Clytia hemisphaerica)
CGCTAATCAGAGATGTCCGCCTTTTAGAGCGTCCGTTGATTCGAGATTTA
ACTGTACCATGTGCTACACAATGCCCCGCATGTTACATCTCGTTTCAGTA
AAACGCAGAAACACTTCAGAAAAATAGAAGAGAAAATGGAATTAAAAATA
AAGCAAATCTTACACATCACATCAGCTATCATTTTCTTCGTATGTTTATC
ATTGAACATTGTGGCTCTCTTTGGAGCTTCATGGATCACCTTTAACGAAA
GTACAAAGCACTTCAAAGACCATCAAGCATATTTTGGAATCACGCGTACG
TGTCGGAGTATGTCCGAAAAACGGTATTGTAAATACCGGAAGGATATCTT
CACATTCAAGTATTTGACCTATAAAGAAGGTAAGAGTTCATCTCTGTAAA
AATCCCTTGAATTACTGAAATGGATTTTTCTAGTGATTTTGGAGCACATT
GTCAGGAGCAAACAATCCATTCGAGTTCAAACTCAAAATTATATTTTCAA
GGTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCCCCCCCCCCCCTAAGTTGGCAATCAGTAAAAATGCAAGAAGCA
TAGGATACTGCATACAAGGGACGCTAAACAAAATCTGTGGATGTTTTTAT
TCAAAGAACATTCCTCTTATTAATCACTTATATTATGTACTACACTTTAG
ACTCCTGAAAATGAAAACAAGTTTTTCTCATTCTAACACAACGTAAATTA
AGTTTCTCGAACTAAATTGGCAAAATGTATCAAATTCATAAAACTAGTTG
GTAAACTAGACTAGATAAAAAACTCATTGTATTAGGCACGCCTATAGTCA
ACATAGCCTTAATGATGAACGTTATGTACAGAAAAATTTTATCAAGACTA
ATAAAGTTATAAGATCTGCTAAGACTTGATTCAATTTGTTCAACTCTAGT
TTTGAATGAATTTTGGTTGATTGAAAGGATTGAGAGCAGCAAAAGTTAAA
TAAAATAATTAATTTCAATTATAGAATGAAGAATGCTTTTATATGGAATC
AGGGTATAGTGTAAACGATTCAAATAAGTTTTTATACTTACATTATACAA
CATTTTAAGTCAGATACCAATTTCAAATTCAGAAAAAATTAAAAAAAGGG
GGGCCCACCCCCTCATTTTGGTATATATACCAACTTAAAGATTCCCTAAT
TTTCAAAAAAAAGGGGGCCCCCCCCCCTCATTTTGGTATCAATACCAACT
TGACTTTTTGAAATTTAAAAAAAAAAATTGACAGCACCCCCCCTGGCCCT
GGGTTTGGTATCTGGATCCTGACCCCCTGAATAGAAATATCTTAGGAATT
CCTCGAGGGAATTCTATTGTAATACACTCGAAACAATCCCACAATGCATC
ACTTTTTTAGAACAATCAAAAACTCCGATAAGGTCTAGTAATGGCAGCGC
GGCAGCGATACTGGAGGTGGTCATCTTCCAGCCTAATGTTAGCCAATATT
TCATAGATCCCAGGGCTTTTGTGTATTTCTTAAGGGAACCTATCAGTTTT
CCAGGTTATTCGAAGCCACCCCCTTTTTTTGATGTACGAGTGACTTCCCA
AAATGACAAATAAGGATTTTCTGGGATATATCACGAGTTTTAAGGCCGGT
CTCCACTTGCGCGCGCTTCGATCGCACTTTTTCGAGCAAAGCTTCCACGC
TATTGGTCAAAAGAAAAATGAAGCAACTCCATTGGCGCGATCTGACGTAA
CGGTTGAAAAAAGTTGAAATGTGTTCAACTTTTTTTTCCAGCGCGCGCTA
CATTTTTATGAAGTAATCTTTTTTCCAAGCAAAAAGGATTGAAGTCAAAA
AGTGCGATCACAGCGCGCGCAAGTGGAGACCGGCCTTTAGTCTCACTTAC
CAGTTGGCTGCGATTTTCCATTTCATTTCAGTGATCTTGTTGGATGTGAT
TTTCCTTCAATTTGTTTTATCGTCAATTTGCTTGCTAGTGGCGTTGAATT
GCA Coding sequence (CDS) from alignment at scaffold_279:144267..146419- >TCONS_00056658 ID=TCONS_00056658|Name=TCONS_00056658|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_279:144267..146419- (Clytia hemisphaerica)
TGATCTTGTTGGATGTGATTTTCCTTCAATTTGTTTTATCGTCAATTTGC
TTGCTAGTGGCGTTGAATTGCATGGAATTAAAAATAAAGCAAATCTTACA
CATCACATCAGCTATCATTTTCTTCGTATGTTTATCATTGAACATTGTGG
CTCTCTTTGGAGCTTCATGGATCACCTTTAACGAAAGTACAAAGCACTTC
AAAGACCATCAAGCATATTTTGGAATCACGCGTACGTGTCGGAGTATGTC
CGAAAAACGGTATTGTAAATACCGGAAGGATATCTTCACATTCAAGTATT
TGACCTATAAAGAAGTGATCTTGTTGGATGTGATTTTCCTTCAATTTGTT
TTATCGTCAATTTGCTTGCTAGTGGCGTTGAATTGCATGGAATTAAAAAT
AAAGCAAATCTTACACATCACATCAGCTATCATTTTCTTCGTATGTTTAT
CATTGAACATTGTGGCTCTCTTTGGAGCTTCATGGATCACCTTTAACGAA
AGTACAAAGCACTTCAAAGACCATCAAGCATATTTTGGAATCACGCGTAC
GTGTCGGAGTATGTCCGAAAAACGGTATTGTAAATACCGGAAGGATATCT
TCACATTCAAGTATTTGACCTATAAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056658-exon-scaffold_279-1575043694:146041..146419 | TCONS_00056658-exon-scaffold_279-1575043694:146041..146419 | Clytia hemisphaerica | exon |
| TCONS_00056658-exon-scaffold_279-1575043694:144267..144338 | TCONS_00056658-exon-scaffold_279-1575043694:144267..144338 | Clytia hemisphaerica | exon |
| TCONS_00056658-exon-scaffold_279-1510915933:146041..146419 | TCONS_00056658-exon-scaffold_279-1510915933:146041..146419 | Clytia hemisphaerica | exon |
| TCONS_00056658-exon-scaffold_279-1510915933:144267..144338 | TCONS_00056658-exon-scaffold_279-1510915933:144267..144338 | Clytia hemisphaerica | exon |
| TCONS_00056658-exon-scaffold_279-1491911889:146041..146419 | TCONS_00056658-exon-scaffold_279-1491911889:146041..146419 | Clytia hemisphaerica | exon |
| TCONS_00056658-exon-scaffold_279-1491911889:144267..144338 | TCONS_00056658-exon-scaffold_279-1491911889:144267..144338 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_279 | supercontig | scaffold_279:144267..146419 - |
Blast
The following BLAST results are available for this feature:
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