TCONS_00056669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056669
Unique NameTCONS_00056669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056669 ID=TCONS_00056669|Name=TCONS_00056669|organism=Clytia hemisphaerica|type=transcript|length=684bp
CCGGTCACAGTGCGAACAATTGCAAAGccaatttcaattgtttttcttGT
AAAGGAAGACATCACGTGTCGATCTGTTTTAAACAAAGGGACAAAGGATA
TAGAAATGGTCGATATCacagaaataataataataacaaagtGAAAGAGA
GAGATACTAAAAGTGAGGATAAAGGGAAAAAGAGAGACACAAAAACTGAT
TCAAAGGGAGAGAGCACACATAATAAAGAAAACGATGAGAGTGATAACAT
TACATGTTTGTCTACACACAGTTGTCAAGTATACTTGCAAACAGCTACTG
CAACGATTTCAAGCCCGAACGTCTccaaagaaatgagaattttatttgAT
CTCGGTTCACAACTGTCGTATATTTCCCCCACTGCTGCTAAGCAACTGAA
ACTTAGTTCCGATGAAACAAAAAACATTTGTATTAAAACTTTTGGTGGTC
ACGTCGAATCGAAAACCCTCGACGTTTTTAAAGTGAAAGTTCAAACCAAT
GAAGGTCCAGAAGAAATTAAACTTTGTTGCAATGAAATTTGTCATCCCAT
ACGAAATGATTTCGTTTATGATGTTAGTAGTCTGCCCGAATTCCAAAATT
TACAAGTTGCTGACAAAGGACTTGTTTGTGAAAAGTCTTTACGCGTTGAT
CTTCTTATCGGTGCAGATAACTTCTGGAAATTTG
Run BLAST on NCBI

protein sequence of TCONS_00056669-protein

>TCONS_00056669-protein ID=TCONS_00056669-protein|Name=TCONS_00056669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
GHSANNCKANFNCFSCKGRHHVSICFKQRDKGYRNGRYHRNNNNNKVKER
DTKSEDKGKKRDTKTDSKGESTHNKENDESDNITCLSTHSCQVYLQTATA
TISSPNVSKEMRILFDLGSQLSYISPTAAKQLKLSSDETKNICIKTFGGH
VESKTLDVFKVKVQTNEGPEEIKLCCNEICHPIRNDFVYDVSSLPEFQNL
QVADKGLVCEKSLRVDLLIGADNFWKF
Run BLAST on NCBI

transcript from alignment at scaffold_280:37546..38229

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056669 ID=TCONS_00056669|Name=TCONS_00056669|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at scaffold_280:37546..38229 (Clytia hemisphaerica)
CAAATTTCCAGAAGTTATCTGCACCGATAAGAAGATCAACGCGTAAAGAC
TTTTCACAAACAAGTCCTTTGTCAGCAACTTGTAAATTTTGGAATTCGGG
CAGACTACTAACATCATAAACGAAATCATTTCGTATGGGATGACAAATTT
CATTGCAACAAAGTTTAATTTCTTCTGGACCTTCATTGGTTTGAACTTTC
ACTTTAAAAACGTCGAGGGTTTTCGATTCGACGTGACCACCAAAAGTTTT
AATACAAATGTTTTTTGTTTCATCGGAACTAAGTTTCAGTTGCTTAGCAG
CAGTGGGGGAAATATACGACAGTTGTGAACCGAGATcaaataaaattctc
atttctttggAGACGTTCGGGCTTGAAATCGTTGCAGTAGCTGTTTGCAA
GTATACTTGACAACTGTGTGTAGACAAACATGTAATGTTATCACTCTCAT
CGTTTTCTTTATTATGTGTGCTCTCTCCCTTTGAATCAGTTTTTGTGTCT
CTCTTTTTCCCTTTATCCTCACTTTTAGTATCTCTCTCTTTCactttgtt
attattattatttctgtGATATCGACCATTTCTATATCCTTTGTCCCTTT
GTTTAAAACAGATCGACACGTGATGTCTTCCTTTACaagaaaaacaattg
aaattggCTTTGCAATTGTTCGCACTGTGACCGG

Coding sequence (CDS) from alignment at scaffold_280:37546..38229

>TCONS_00056669 ID=TCONS_00056669|Name=TCONS_00056669|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_280:37546..38229 (Clytia hemisphaerica)
AAATTTCCAGAAGTTATCTGCACCGATAAGAAGATCAACGCGTAAAGACT
TTTCACAAACAAGTCCTTTGTCAGCAACTTGTAAATTTTGGAATTCGGGC
AGACTACTAACATCATAAACGAAATCATTTCGTATGGGATGACAAATTTC
ATTGCAACAAAGTTTAATTTCTTCTGGACCTTCATTGGTTTGAACTTTCA
CTTTAAAAACGTCGAGGGTTTTCGATTCGACGTGACCACCAAAAGTTTTA
ATACAAATGTTTTTTGTTTCATCGGAACTAAGTTTCAGTTGCTTAGCAGC
AGTGGGGGAAATATACGACAGTTGTGAACCGAGATcaaataaaattctca
tttctttggAGACGTTCGGGCTTGAAATCGTTGCAGTAGCTGTTTGCAAG
TATACTTGACAACTGTGTGTAGACAAACATGTAATGTTATCACTCTCATC
GTTTTCTTTATTATGTGTGCTCTCTCCCTTTGAATCAGTTTTTGTGTCTC
TCTTTTTCCCTTTATCCTCACTTTTAGTATCTCTCTCTTTCactttgtta
ttattattatttctgtGATATCGACCATTTCTATATCCTTTGTCCCTTTG
TTTAAAACAGATCGACACGTGATGTCTTCCTTTACaagaaaaacaattga
aattggCTTTGCAATTGTTCGCACTGTGACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035693XLOC_035693Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056669-proteinTCONS_00056669-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056669-exon-scaffold_280-1491911889:37546..38229TCONS_00056669-exon-scaffold_280-1491911889:37546..38229Clytia hemisphaericaexon
TCONS_00056669-exon-scaffold_280-1510915933:37546..38229TCONS_00056669-exon-scaffold_280-1510915933:37546..38229Clytia hemisphaericaexon
TCONS_00056669-exon-scaffold_280-1575043694:37546..38229TCONS_00056669-exon-scaffold_280-1575043694:37546..38229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_280supercontigscaffold_280:37546..38229 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.76242	1.99944	0.591975	0.496418	2.92099	2.14902	3.26488	5.62088	2.32877	3.97602	3.29485	2.91596	4.99492	4.5146	8.23635	9.51678	5.02001	9.01463	3.09649	2.74175	3.42822	3.54677	1.49612	2.72369	4.08976	4.58041	1.22898	1.2023	1.11877	1.43585
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008737Peptidase_asp_put
IPR021109Peptidase_aspartic_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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