TCONS_00056675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056675
Unique NameTCONS_00056675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056675 ID=TCONS_00056675|Name=TCONS_00056675|organism=Clytia hemisphaerica|type=transcript|length=581bp
CAATTGGTGCACTCGATTAAAGGCCCATGATAGCACAAGACCGAAGTTGT
GCCGGGGTTGCAACAAGTTTTATGACCGTCTAGATACTCATTTAAGAAGC
AAACCACATAAAATCAAGGACGCAGGCCAGATTAAAATTGAAACCCAAGC
CTGCCAACGTAAGATGAAGGATTTCCTCAACTTCCGTGATTTATTTCCAA
GAATGAAACACAACACGTTACCATCAACTTTATCTTCATTCGAAACAAGT
ACGTCCAGGCGTAGTTCAATTTCAACGGCAAAAGAACATACGTCAAGtcc
aaagaaaagaaagactgggtatgtcataatattttgcacaTTAAAGCATC
AAGGCTTATTTAGAACCTTTACTAAGGTTTCACTCTTTTCAAGTCATTCA
TTATTAAGTCCAATCCATCTTTGAAAACGTGAATGAAATTGTACTTGAAT
GTGGAAGACTTTGGCAAACCATTAAGAATAGGGCAGGATATAGGGCAAAA
CTTATAGTTTACGGGTCACTGCTTTTTTCTTATACAGTTCATTGAAATCT
TTATCGACGGTAACATCAAGTTCGCAGTCAT
Run BLAST on NCBI

protein sequence of TCONS_00056675-protein

>TCONS_00056675-protein ID=TCONS_00056675-protein|Name=TCONS_00056675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
NWCTRLKAHDSTRPKLCRGCNKFYDRLDTHLRSKPHKIKDAGQIKIETQA
CQRKMKDFLNFRDLFPRMKHNTLPSTLSSFETSTSRRSSISTAKEHTSSP
KKRKTGYVIIFCTLKHQGLFRTFTKVSLFSSHSLLSPIHL
Run BLAST on NCBI

transcript from alignment at scaffold_281:49241..50016+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056675 ID=TCONS_00056675|Name=TCONS_00056675|organism=Clytia hemisphaerica|type=transcript|length=776bp|location=Sequence derived from alignment at scaffold_281:49241..50016+ (Clytia hemisphaerica)
CAATTGGTGCACTCGATTAAAGGCCCATGATAGCACAAGACCGAAGTTGT
GCCGGGGTTGCAACAAGTTTTATGACCGTCTAGATACTCATTTAAGAAGC
AAACCACATAAAATCAAGGACGCAGGCCAGATTAAAATTGAAACCCAAGC
CTGCCAACGTAAGATGAAGGATTTCCTCAACTTCCGTGATTTATTTCCAA
GAATGAAACACAACACGTAAGTATATGAATTTCCTTCATTTTCTGTTTCG
CAGAACTTGTAAATAAACTTTTAAGAATGCAGATGGGCTTGGTTTAGCTA
taattactttttttctttttccaatggAAAGTATTGAGTTAGTAACTGAC
TTAATATATTCATTGATCTTATTGCAAAGAAacacattttgtttttttaa
tctttatatAGGTTACCATCAACTTTATCTTCATTCGAAACAAGTACGTC
CAGGCGTAGTTCAATTTCAACGGCAAAAGAACATACGTCAAGtccaaaga
aaagaaagactgggtatgtcataatattttgcacaTTAAAGCATCAAGGC
TTATTTAGAACCTTTACTAAGGTTTCACTCTTTTCAAGTCATTCATTATT
AAGTCCAATCCATCTTTGAAAACGTGAATGAAATTGTACTTGAATGTGGA
AGACTTTGGCAAACCATTAAGAATAGGGCAGGATATAGGGCAAAACTTAT
AGTTTACGGGTCACTGCTTTTTTCTTATACAGTTCATTGAAATCTTTATC
GACGGTAACATCAAGTTCGCAGTCAT

Coding sequence (CDS) from alignment at scaffold_281:49241..50016+

>TCONS_00056675 ID=TCONS_00056675|Name=TCONS_00056675|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_281:49241..50016+ (Clytia hemisphaerica)
AATTGGTGCACTCGATTAAAGGCCCATGATAGCACAAGACCGAAGTTGTG
CCGGGGTTGCAACAAGTTTTATGACCGTCTAGATACTCATTTAAGAAGCA
AACCACATAAAATCAAGGACGCAGGCCAGATTAAAATTGAAACCCAAGCC
TGCCAACGTAAGATGAAGGATTTCCTCAACTTCCGTGATTTATTTCCAAG
AATGAAACACAACACGTTACCATCAACTTTATCTTCATTCGAAACAAGTA
CGTCCAGGCGTAGTTCAATTTCAACGGCAAAAGAACATACGTCAAGtcca
aagaaaagaaagactgggtatgtcataatattttgcacaTTAAAGCATCA
AGGCTTATTTAGAACCTTTACTAAGGTTTCACTCTTTTCAAGTCATTCAT
TATTAAGTCCAATCCATCTTTGAAATTGGTGCACTCGATTAAAGGCCCAT
GATAGCACAAGACCGAAGTTGTGCCGGGGTTGCAACAAGTTTTATGACCG
TCTAGATACTCATTTAAGAAGCAAACCACATAAAATCAAGGACGCAGGCC
AGATTAAAATTGAAACCCAAGCCTGCCAACGTAAGATGAAGGATTTCCTC
AACTTCCGTGATTTATTTCCAAGAATGAAACACAACACGTTACCATCAAC
TTTATCTTCATTCGAAACAAGTACGTCCAGGCGTAGTTCAATTTCAACGG
CAAAAGAACATACGTCAAGtccaaagaaaagaaagactgggtatgtcata
atattttgcacaTTAAAGCATCAAGGCTTATTTAGAACCTTTACTAAGGT
TTCACTCTTTTCAAGTCATTCATTATTAAGTCCAATCCATCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035698XLOC_035698Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056675-proteinTCONS_00056675-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056675-exon-scaffold_281-1491911889:49241..49456TCONS_00056675-exon-scaffold_281-1491911889:49241..49456Clytia hemisphaericaexon
TCONS_00056675-exon-scaffold_281-1510915933:49241..49456TCONS_00056675-exon-scaffold_281-1510915933:49241..49456Clytia hemisphaericaexon
TCONS_00056675-exon-scaffold_281-1575043694:49241..49456TCONS_00056675-exon-scaffold_281-1575043694:49241..49456Clytia hemisphaericaexon
TCONS_00056675-exon-scaffold_281-1491911889:49652..50016TCONS_00056675-exon-scaffold_281-1491911889:49652..50016Clytia hemisphaericaexon
TCONS_00056675-exon-scaffold_281-1510915933:49652..50016TCONS_00056675-exon-scaffold_281-1510915933:49652..50016Clytia hemisphaericaexon
TCONS_00056675-exon-scaffold_281-1575043694:49652..50016TCONS_00056675-exon-scaffold_281-1575043694:49652..50016Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_281supercontigscaffold_281:49241..50016 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.105645	0	0	0	0	0	0	0	0	0	0	0.285156	0.797728	0.227108	0.88682	0.368025	0.442458	0.00254879	0.13493	0.411654	0.320202	0	0	0	0	0.00221324	0.00231735
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top