TCONS_00056685 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00056685
Unique Name	TCONS_00056685
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2223

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_281:13256..17129-

transcript sequence

>TCONS_00056685 ID=TCONS_00056685|Name=TCONS_00056685|organism=Clytia hemisphaerica|type=transcript|length=2223bp
CAAAAAGAGGAGAATACCAATAAGaaataaaacatccaaaaaatcgGATA
ACTTCATGATAAAAACAAGTCTATGGACCACATGCTTTACGTTGCAATAT
TTTCAGCTGCATAAAGTATTAAATGTTAAATGGTTACATAATATAtgtcc
aaaaagaaaaagataaaaaacagataaaaaaatccTTCCAGTTGGTTCAA
AAGATGAGAtgcaaaataagaataaattaaaGTTGAAGAATACAAACGGT
GGGGTGAAATGATTTAGTAATTTTAAACTGTGTTAAAATCATCCGAATCC
ATAGCCAAAAGCACTGGGGTAAGGTCATCTGCCGATCTCATTGCTCCTCC
AGGGATTCTTAATTGAAAAGCACAAGAGGATGTGAACACTCCTAAACTGC
GCCAAATCTCAAGttgaattttcttcttctttactGCAAATAGATCCGTT
GTACCAGTTGTGAATTCCAATAGTTTGCTTAATTGGTCTTTCGTAAGACG
GTGAACAGCCTGTCTAATAACAATCGCATCGTCAATCGATACTGATGGGT
GGATAAAATCGATACTGTCGATGAAGGAACTCGCATTGAGAGCATCCAAT
TCCTCATCGAATAAGAGGATTCTTCTGGCAATCAGAGGATACTGAATGCA
AAGATCAAGTACCCCATTGATCTTCAACCCATCTCGTAAGTGGTCTAGAG
GAGTTTTTCTTTTCAGGAGGAGGTCATAAACTATAAGAGATTGCAATATG
TTCTCCCTGCTGTCGGGCTGAAATAAAAGACAAAACTGACTTAGATTTAT
TGCTTCGtctttatttgataaaaaacacCTTACATAACTATATTCTAGAA
GTTTTAACAAacaaaatgctagatcctatcagGCCGAACTGGACAGGACC
TGGCCGATCTAAGGGAgccgaaaaattcaaaacaaagatgaTGTAATGAA
TGTTGCTGGTAAAGTGCAGAACATATAGAACATAGCTGTTTCTATTTCTA
CTATTTTGAcattacaaaaaaacattttctatcAAAATATTACCAATATT
GACGttgaattaaataaaaaatagtgATTTGCTGATATTTGTTCTGAAAG
CACTTTTTGGTATCtatatcaataaaaaacttAGTGGAATTTTCGTTCTG
TAAAGTAATTAAAATCGAATACTGCTCGACCCATTTTCCCCCGGACCTCA
AACACAAACCCACGTCTTTTTTATTCCTTTGCCGTTCAGTTTCTTCTCAG
GAAGTGTGTGTCATCGACATCAGATTGAACATAATATAATGCCTTAGCTC
AAAGATGGAATTTATCAATCAACATCTATAATCCTGCAGTTGCCATCTTG
CCGAGATCTTTTGTTGGTTGTTGGGGCTTGTCAAAATTCATTTGCAAATC
TTCAACCGAAATTGCAGGGATTTGAAATCATCACCCACGCAGTGGTCTTG
TCGCGCCCCTGATTCGTTGTACGCATGCAGGACCTCACTCAGCATTGAAC
ACGATGATGGTATGATCGAGCCCAAATTTGAAAGAACTTCTCGTGTGTTC
TGTGGTGTGGTTTTCAATGTCGGTTGGTGAATGATGGCTGCAATGTCAAG
TGATTCGTCAACCTTAACAGTTATCATGTCTATCTTGTTAATGCTGTCAT
CGTTGTCAGTGAATGTCAATTTATTACAGTCCTCGTGATCAGTAACCGTA
TTATCAGTATCAGAGATAATGTCGTCAGTTGTGGCGTCTTTGGTAACAGT
TTCGTCAGTTGGATGGTCATCACGGAGCAACCCTGTCCCTGTACTTGTGT
CGACATTGTCGAGATTTGTCACTTTGTCCAGTTGGATAGCGTCATTTGTA
TTCATGTCATCAGTATTTGTTGAGTCATTTATTTTGTGGTCATCAGTAAT
CATCGTAAAGTCGTCGGTATCTATTGTAATTTTCTCCTGGTTTTCCGGAA
TTGTCAAAGTTTTTGTCGAACTGTCTCGGTCAACTGGTTTTACCGTTAAG
TCACAGTCATTTGAAGTTGTTTTGTCAGCCGATTTGGATGTTGTGGCGGA
CGTGTTCTTCACGAAATTTTGTCGTTTCTCGGTACACACCACTGAAAACC
CAGAAGACTTTGGTTTTGCCACAGGTAAGCCCAAATTAACTTTCTTGAAC
ACAAACGAGTTGACGTTGGCCATCTTCTCTGTTGAGATTATGTCTGTTTG
TGGCTACAAAggaaaaaaaatgc

Run BLAST on NCBI

transcript from alignment at scaffold_281:13256..17129-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00056685 ID=TCONS_00056685|Name=TCONS_00056685|organism=Clytia hemisphaerica|type=transcript|length=3874bp|location=Sequence derived from alignment at scaffold_281:13256..17129- (Clytia hemisphaerica)
CAAAAAGAGGAGAATACCAATAAGAAATAAAACATCCAAAAAATCGGATA
ACTTCATGATAAAAACAAGTCTATGGACCACATGCTTTACGTTGCAATAT
TTTCAGCTGCATAAAGTATTAAATGTTAAATGGTTACATAATATATGTCC
AAAAAGAAAAAGATAAAAAACAGATAAAAAAATCCTTCCAGTTGGTTCAA
AAGATGAGATGCAAAATAAGAATAAATTAAAGTTGAAGAATACAAACGGT
GGGGTGAAATGATTTAGTAATTTTAAACTGTGTTAAAATCATCCGAATCC
ATAGCCAAAAGCACTGGGGTAAGGTCATCTGCCGATCTCATTGCTCCTCC
AGGGATTCTTAATTGAAAAGCACAAGAGGATGTGAACACTCCTAAACTGC
GCCAAATCTCAAGTTGAATTTTCTTCTTCTTTACTGCAAATAGATCCGTT
GTACCAGTTGTGAATTCCAATAGTTTGCTTAATTGGTCTTTCGTAAGACG
GTGAACAGCCTGTCTAATAACAATCGCATCGTCAATCGATACTGATGGGT
GGATAAAATCGATACTGTCGATGAAGGAACTCGCATTGAGAGCATCCAAT
TCCTCATCGAATAAGAGGATTCTTCTGGCAATCAGAGGATACTGAATGCA
AAGATCAAGTACCCCATTGATCTTCAACCCATCTCGTAAGTGGTCTAGAG
GAGTTTTTCTTTTCAGGAGGAGGTCATAAACTATAAGAGATTGCAATATG
TTCTCCCTGCTGTCGGGCTGAAATAAAAGACAAAACTGACTTAGATTTAT
TGCTTCGTCTTTATTTGATAAAAAACACCTTACATAACTATATTCTAGAA
GTTTTAACAAACAAAATGCTAGATCCTATCAGGCCGAACTGGACAGGACC
TGGCCGATCTAAGGGAGCCGAAAAATTCAAAACAAAGATGATGTAATGAA
TGTTGCTGGTAAAGTGCAGAACATATAGAACATAGCTGTTTCTATTTCTA
CTATTTTGACATTACAAAAAAACATTTTCTATCAAAATATTACCAATATT
GACGTTGAATTAAATAAAAAATAGTGATTTGCTGATATTTGTTCTGAAAG
CACTTTTTGGTATCTATATCAATAAAAAACTTAGTGGAATTTTCGTTCTG
TAAAGTAATTAAAATCGAATACTGCTCGACCCATTTTCCCCCGGACCTCA
AACACAAACCCACGTCTTTTTTATTCCTTTGCCGTTCAGTTTCTTCTCAG
GAAGTGTGTGTCATCGACATCAGATTGAACATAATATAATGCCTTAGCTC
AAAGTAAGTTGAAATAAATTCAAATGATTTAAAACAACATTGCTGAAGCT
GAAAATAGTAGGTCTCTACAAGTTTTGGCACTATTTCAATTAACATCAAA
ACATTATAAATCTTACACTGGGTTGAATCTACTTTTCTTTTTTGGGAGAG
GCCATTTTAACTTATCACAGGGGGACAATCAAAAGACAATTACAAATCTC
TTCCTCTGTTAAGTTTCGTATGGTTCAAAACTGCCAATGGTTGGTTCAAG
TTATAGTCCGTTACCCCCCCCCCTGTGGACGACATGGATTCCCTGTAGCA
TTCTACAATGGAAAATTTCAGGATTTAGTAACATTCTAGATTTTTTATGG
AAAATCTTGAATTTTTCCGATACTTGGCAAGAAAATAGAGCAAATGTTAT
GGACTTTCCAATACTTGGTAAGAAAATAGAGCAAATTTTATGGAATTTCC
GATATATTTGACTAAAAAATAATTAAGAAAAATCCTGCATTTTCCGAAAC
CTTTTCAAATTTCTTAGGATTTCAAATTGAAAAAAAAAATCGTCCATAGG
GGGTAATGCTAATGGTTTTTTTCTCGAACTGCACAATGCTAAATTACTAA
ATACTTTGTAAAAGCAACTTTTTAAAATCTTAATTTCTTGACCTCAAACC
GACTGGTGCAACCGCAATTCGAAATGTCACAAAATGAATTAATTTGATTG
ATACAGTCAAATTACAAGAAATGTGAATCAAAGTTGTGATGGTGACAATA
GAATTGTTTTTTTGCAGAACAAAATTTTCAAAAAAATTATTTCAAAAAGA
ACATAATATTCTAATTAAAGAACATAGGACAATTATGAAATGTTGTAAAG
AATGAACAAAATATTGTCCTGTATAAGTGTCATACATANGAATTAATTTG
ATTGATACAGTCAAATTACAAGAAATGTGAATCAAAGTTGTGATGGTGAC
AATAGAATTGTTTTTCTTGCAGAACAAAATTTTCAAAAAAATTATTTCAA
AAAGAACATAATATTCTAATTAAAGAACATAGGACAATTATGAAATGTTG
TAAAGAACGAACAAAATATTGTCCTGTATAAGTGTCATACATATCTATCC
TTGCTAACAAGGTCTAAATTTTTGGCTTTCTACTAGACATAAAAATCCTA
GAAAAATCAAATTAAAAAATGAAAAAAAAATTATATATAAAAAAAACTAT
TTACAAATACTTTATATTTTTTTATTTTTCCTGAATCTTTGACTCCTGTG
TCGACATATCATAGTCCTGCTCCAAACCAAAATCAGTTTTCAATTTAAAA
TAAATGTCTGCTACCNTTTTTTTAATTTTTCCTGAATCTTTGACTCCTGT
GTCGACATATCATAGTCCTGCTCCAAACCAAAATCAGTTTTCAATTTAAA
ATAAATGTCTGCTACCTTATCGGGGTTCAGTTTTTCGAATCCATGCCAGC
CCTTAAAAAATTGCCCCGTTTCAATTCTTCAGGATGGAATTTATCAATCA
ACATCTATAATCCTGCAGTTGCCATCTTGCCGAGATCTTTTGTTGGTTGT
TGGGGCTTGTCAAAATTCATTTGCAAATCTTCAACCGAAATTGCAGGTAA
GGTTTCCTCGCCAGTGAAAATTAGAGGATTGCGTTCAATCGCAGTCTTAA
TATCTTTCAGTTGAGATGAAATTTCTGTGTTCATGTTTGCAACTACATTT
TTGAGGGAGATGACTTCTTCTTTTAATTGACTATTTTCAATTTTCAAAGC
AAATACTTCCATTTTCAGGGATTTGAAATCATCACCCACGCAGTGGTCTT
GTCGCGCCCCTGATTCGTTGTACGCATGCAGGACCTCACTCAGCATTGAA
CACGATGATGGTATGATCGAGCCCAAATTTGAAAGAACTTCTCGTGTGTT
CTGTGGTGTGGTTTTCAATGTCGGTTGGTGAATGATGGCTGCAATGTCAA
GTGATTCGTCAACCTTAACAGTTATCATGTCTATCTTGTTAATGCTGTCA
TCGTTGTCAGTGAATGTCAATTTATTACAGTCCTCGTGATCAGTAACCGT
ATTATCAGTATCAGAGATAATGTCGTCAGTTGTGGCGTCTTTGGTAACAG
TTTCGTCAGTTGGATGGTCATCACGGAGCAACCCTGTCCCTGTACTTGTG
TCGACATTGTCGAGATTTGTCACTTTGTCCAGTTGGATAGCGTCATTTGT
ATTCATGTCATCAGTATTTGTTGAGTCATTTATTTTGTGGTCATCAGTAA
TCATCGTAAAGTCGTCGGTATCTATTGTAATTTTCTCCTGGTTTTCCGGA
ATTGTCAAAGTTTTTGTCGAACTGTCTCGGTCAACTGGTTTTACCGTTAA
GTCACAGTCATTTGAAGTTGTTTTGTCAGCCGATTTGGATGTTGTGGCGG
ACGTGTTCTTCACGAAATTTTGTCGTTTCTCGGTACACACCACTGAAAAC
CCAGAAGACTTTGGTTTTGCCACAGGTAAGCCCAAATTAACTTTCTTGAA
CACAAACGAGTTGACGTTGGCCATCTTCTCTGTTGAGATTATGTCTGTTT
GTGGCTACAAAGGAAAAAAAATGC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_035705	XLOC_035705	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00056685-exon-scaffold_281-1575043694:15827..17129	TCONS_00056685-exon-scaffold_281-1575043694:15827..17129	Clytia hemisphaerica	exon
TCONS_00056685-exon-scaffold_281-1575043694:14234..14347	TCONS_00056685-exon-scaffold_281-1575043694:14234..14347	Clytia hemisphaerica	exon
TCONS_00056685-exon-scaffold_281-1575043694:13256..14061	TCONS_00056685-exon-scaffold_281-1575043694:13256..14061	Clytia hemisphaerica	exon
TCONS_00056685-exon-scaffold_281-1510915933:15827..17129	TCONS_00056685-exon-scaffold_281-1510915933:15827..17129	Clytia hemisphaerica	exon
TCONS_00056685-exon-scaffold_281-1510915933:14234..14347	TCONS_00056685-exon-scaffold_281-1510915933:14234..14347	Clytia hemisphaerica	exon
TCONS_00056685-exon-scaffold_281-1510915933:13256..14061	TCONS_00056685-exon-scaffold_281-1510915933:13256..14061	Clytia hemisphaerica	exon
TCONS_00056685-exon-scaffold_281-1491911889:15827..17129	TCONS_00056685-exon-scaffold_281-1491911889:15827..17129	Clytia hemisphaerica	exon
TCONS_00056685-exon-scaffold_281-1491911889:14234..14347	TCONS_00056685-exon-scaffold_281-1491911889:14234..14347	Clytia hemisphaerica	exon
TCONS_00056685-exon-scaffold_281-1491911889:13256..14061	TCONS_00056685-exon-scaffold_281-1491911889:13256..14061	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_281	supercontig	scaffold_281:13256..17129 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.0178469	0	0.110902	0	0.606724	0.516473	0.708793	0.531409	0.194792	0.558389	0.49671	0.413124	0	0.594589	0	0	0.217222	0.345987	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00056685 vs. Swiss-Prot (Human)

BLAST of TCONS_00056685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00056685 (transcript) - C. hemisphaerica