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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056729 ID=TCONS_00056729|Name=TCONS_00056729|organism=Clytia hemisphaerica|type=transcript|length=3102bp
AGGAACAGCCACATGTTTGGTTAGAAAGTGTCTTCTGAAAGCATCCTAAC
CAAGCGACGTTTTCTGCttgttttgattaaaaaaactcTAGCCNGAAAGT
GTCTTCTGAAAGCATCCTAACCAAGCGACGTTTTCTGCTTGTTTGTATAA
AAAAACCTCTCTAGcttaaaatacataaaaatggaaattaaaaATCGTGA
CaaaatgcaaaatatttttttcgcaTCAGTAAAATTTGTCAGTAttcatt
gggctattccattttatatccatacagggggtggacgaacatttccagag
ggtaatctgagaacaatttccaggggatgttttttcatttttccaagggg
gtaaaaagttattctaaaatttccagtggTTTAAAGACTGAtgttagttc
gtccaccctcgctttaaggtatgaaaagaatttttccaagggtatttttt
tgcaaatttttccattttccagttgttctccacacattttcaataatttc
tttttgacttgaaaaggttcgtccaccccctgtatggttttttatgGAAC
AgtccattttttaaagattgataATTATTGATAGATACTGTAAAATATCT
CTCCTGAAAGCTAACACAATCATAATGTCATTTTTAAAGGCGCTGACCAT
TAGTAGGGAAGTCATTTTATACATTGACcgattcagaaaaaaaaatggtT
CGTATAATTTGCTCTCTCATCCAGCAGAACATCATTTATGGTTCTCTGTT
ACATACAAATAGCAATAAGTGAATACGTCATTCTTCCATTTTCAATTCTT
TACTATCAACAATACCAGGACCAGGTAAAACATCTGTCAAACCCAGTCCA
TTAATAATATCCAAAACTTTTTGCTTATCAACTGGATTAGAGCATCTCTC
ATACATCAGTCTCATTTTCTTGGTATTATAACCCAACAAATATCTTTCAG
CAGATTTCAATGTCCCTGTCACATGTATACAAGATAAAACACAAAGTCTT
TGTCGCAGCATTTTCACGAAAGATACACATGTTCGTACTTCACGGTGATA
GTCTCTGGCTACTTGTAAGAAAAATAtcccagtatatggatttgtgtatt
ttacataCATCCCTTGAGTAAAAGTTGTTTGACCGTATTCTCCATAGAGT
TCTTTTACAATGTTTTTGATCGTATTTTTTATGGTATCTTTGTCTAGATT
AAGGTCGATTTTCTCATCCGCATACTGTATTTTGATGaccaaatatctgt
tctttttccGCACCATTTTGTATTAGTTTTGTCTTTGAGGTATCTGAAac
tggaaaaaaaatatcagaGTCATATTACACTTTGATCATTAACAACAAAG
TATTTTTGCAGCAAATTCTTATTAGATTTTATAAACCAAGCATGGATTTG
GGTGATAGCTGGGTGATACCATCACTCAACTTGcacagaaaattttcaaa
aatatattgacacaGATATACATCAAAGTTATTTCTCTATTTCGACAAAT
TTAACTAATTTTATTCGAAAAATTCCAATATTTACATCAATACGGGAAAT
TTCTGTGCTTCTCGAATTTTCTGATCTTGCAATGCCcttttgtaaaaatg
ttttaGAGAAAATTTATGTCCAACAAAGAGCAAAATAGGTCCTGTGATAA
TTAAACTGGGACCTCAAAATTTAATCGCACCAAAAATTTCCCTACTACTA
AATAAAAAAGTGATGATTAATTGTAAATTGAGTATGATACTTCTTATTAA
TACGGTAGAAATTTGTAATAGCTATGGTTATACGTTATTATCCACATATA
ATTCAATTGAGGTTGAAAAAGCACACTTGTATCAAGCAAGAAGGGTGTTT
ATAAAAGAATGGTATAGGTGTCAGTAAAAAAACAATTATgaattaaaata
ataaaaatacatAAACGGTATCCTCAAGTTGATTTGAAAgctatattttg
tttttgacaTCATTATACCATTCGTTCAATTTATATTCATCTAGAGCTTG
GTAAAAATATCTCCACCATAAGATGACCATATCCCATGGCTCCTTGAAAG
GGCCTTTAAATTTAGCGACATCTTGACGTGTGGGTTTGTTTTTCACTTGC
CAGGGCTTCTTGGTTAAGCAGCATGCgaaatgataaattttcaacGGGTG
ATACAAATAACGGCGAACATTATAAGCGTATGGTAATTCATTCCACATAT
CATGATCCGCATAATAATGCCATAATAACACTTGGTCATTAGGACATTCT
GTACCTTTTGTTAAATCACCCCATAAATTCATCAACCCATTATAATGCTT
TGTGGACGGTTTAAACAAGATAATCCCTGCATTGAAACATGGATCAATAA
TACCAGGTCTGGCACAATAAGCAGCATTGAAATCGGTCTCCAAATCAAAT
AACTCATCAACACTGACTACAGGAACGACATCAGAATCTAGATACATAAT
TTTCTTATATTGGGTATAATTCCACGCATGAAATCTCATGAAAGTTCCCG
GTAATCCTAAATTCCGCTCTTTCCTGCCCTTTTGTCGGTCCATCCAATTA
CAATCTAGTGCTTCAACAAGTTTAACTTCAAAGCCAACTTTTCTTAATGC
TTCTCGTGTTCCTGGAGTCACACCATCAGAAACTAAAACAATCAATTTAT
GATAACAAgataattttttcaacataTGACCAAGTTGGATAGCACCTATT
GCATAATTATCATTCAACATTGCGGTCAACCAAGCATAAGGTTCCTTGCC
ACGGTTATCTTCTTTACATTTCTGTTGGTAATACCTCATGTCCATTTCAT
GTAACTGGTATTCCATTTCCCAAGAGATTTCTTCAGCCCTCTTAACTCTT
TCTTCATCCTTGCTAGCCATTGAAACAATCAGTCTCACATATTGAATCAT
GTATTGAAAAACAAGAGGGGCACATAAGCGGAACAgagcaaaaaataaaa
caatgcccACAAATGCTCTAAAATAGTTTGATTGATGGAATgccattatt
tatttttttcagttcattgacatttttttcgctaaaaaaaataataaaca
taCAGATTGTTATAGCCAGAATAGTTAAAGTTTTTGACATGACAGACAGC
AG Run BLAST on NCBI transcript from alignment at scaffold_282:189867..193025+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056729 ID=TCONS_00056729|Name=TCONS_00056729|organism=Clytia hemisphaerica|type=transcript|length=3159bp|location=Sequence derived from alignment at scaffold_282:189867..193025+ (Clytia hemisphaerica)
AGGAACAGCCACATGTTTGGTTAGAAAGTGTCTTCTGAAAGCATCCTAAC
CAAGCGACGTTTTCTGCttgttttgattaaaaaaactcTAGCCNGAAAGT
GTCTTCTGAAAGCATCCTAACCAAGCGACGTTTTCTGCTTGTTTGTATAA
AAAAACCTCTCTAGcttaaaatacataaaaatggaaattaaaaATCGTGA
CaaaatgcaaaatatttttttcgcaTCAGTAAAATTTGTCAGTAttcatt
gggctattccattttatatccatacagggggtggacgaacatttccagag
ggtaatctgagaacaatttccaggggatgttttttcatttttccaagggg
gtaaaaagttattctaaaatttccagtggTTTAAAGACTGAtgttagttc
gtccaccctcgctttaaggtatgaaaagaatttttccaagggtatttttt
tgcaaatttttccattttccagttgttctccacacattttcaataatttc
tttttgacttgaaaaggttcgtccaccccctgtatggttttttatgGAAC
AgtccattttttaaagattgataATTATTGATAGATACTGTAAAATATCT
CTCCTGAAAGCTAACACAATCATAATGTCATTTTTAAAGGCGCTGACCAT
TAGTAGGGAAGTCATTTTATACATTGACcgattcagaaaaaaaaatggtT
CGTATAATTTGCTCTCTCATCCAGCAGAACATCATTTATGGTTCTCTGTT
ACATACAAATAGCAATAAGTGAATACGTCATTCTTCCATTTTCAATTCTT
TACTATCAACAATACCAGGACCAGGTAAAACATCTGTCAAACCCAGTCCA
TTAATAATATCCAAAACTTTTTGCTTATCAACTGGATTAGAGCATCTCTC
ATACATCAGTCTCATTTTCTTGGTATTATAACCCAACAAATATCTTTCAG
CAGATTTCAATGTCCCTGTCACATGTATACAAGATAAAACACAAAGTCTT
TGTCGCAGCATTTTCACGAAAGATNTCACATGTATACAAGATAAAACACA
AAGTCTTTGTCGCAACATTTTCACGAAAGATACACATGTTCGTACTTCAC
GGTGATAGTCTCTGGCTACTTGTAAGAAAAATAtcccagtatatggattt
gtgtattttacataCATCCCTTGAGTAAAAGTTGTTTGACCGTATTCTCC
ATAGAGTTCTTTTACAATGTTTTTGATCGTATTTTTTATGGTATCTTTGT
CTAGATTAAGGTCGATTTTCTCATCCGCATACTGTATTTTGATGaccaaa
tatctgttctttttccGCACCATTTTGTATTAGTTTTGTCTTTGAGGTAT
CTGAAactggaaaaaaaatatcagaGTCATATTACACTTTGATCATTAAC
AACAAAGTATTTTTGCAGCAAATTCTTATTAGATTTTATAAACCAAGCAT
GGATTTGGGTGATAGCTGGGTGATACCATCACTCAACTTGcacagaaaat
tttcaaaaatatattgacacaGATATACATCAAAGTTATTTCTCTATTTC
GACAAATTTAACTAATTTTATTCGAAAAATTCCAATATTTACATCAATAC
GGGAAATTTCTGTGCTTCTCGAATTTTCTGATCTTGCAATGCCcttttgt
aaaaatgttttaGAGAAAATTTATGTCCAACAAAGAGCAAAATAGGTCCT
GTGATAATTAAACTGGGACCTCAAAATTTAATCGCACCAAAAATTTCCCT
ACTACTAAATAAAAAAGTGATGATTAATTGTAAATTGAGTATGATACTTC
TTATTAATACGGTAGAAATTTGTAATAGCTATGGTTATACGTTATTATCC
ACATATAATTCAATTGAGGTTGAAAAAGCACACTTGTATCAAGCAAGAAG
GGTGTTTATAAAAGAATGGTATAGGTGTCAGTAAAAAAACAATTATgaat
taaaataataaaaatacatAAACGGTATCCTCAAGTTGATTTGAAAgcta
tattttgtttttgacaTCATTATACCATTCGTTCAATTTATATTCATCTA
GAGCTTGGTAAAAATATCTCCACCATAAGATGACCATATCCCATGGCTCC
TTGAAAGGGCCTTTAAATTTAGCGACATCTTGACGTGTGGGTTTGTTTTT
CACTTGCCAGGGCTTCTTGGTTAAGCAGCATGCgaaatgataaattttca
acGGGTGATACAAATAACGGCGAACATTATAAGCGTATGGTAATTCATTC
CACATATCATGATCCGCATAATAATGCCATAATAACACTTGGTCATTAGG
ACATTCTGTACCTTTTGTTAAATCACCCCATAAATTCATCAACCCATTAT
AATGCTTTGTGGACGGTTTAAACAAGATAATCCCTGCATTGAAACATGGA
TCAATAATACCAGGTCTGGCACAATAAGCAGCATTGAAATCGGTCTCCAA
ATCAAATAACTCATCAACACTGACTACAGGAACGACATCAGAATCTAGAT
ACATAATTTTCTTATATTGGGTATAATTCCACGCATGAAATCTCATGAAA
GTTCCCGGTAATCCTAAATTCCGCTCTTTCCTGCCCTTTTGTCGGTCCAT
CCAATTACAATCTAGTGCTTCAACAAGTTTAACTTCAAAGCCAACTTTTC
TTAATGCTTCTCGTGTTCCTGGAGTCACACCATCAGAAACTAAAACAATC
AATTTATGATAACAAgataattttttcaacataTGACCAAGTTGGATAGC
ACCTATTGCATAATTATCATTCAACATTGCGGTCAACCAAGCATAAGGTT
CCTTGCCACGGTTATCTTCTTTACATTTCTGTTGGTAATACCTCATGTCC
ATTTCATGTAACTGGTATTCCATTTCCCAAGAGATTTCTTCAGCCCTCTT
AACTCTTTCTTCATCCTTGCTAGCCATTGAAACAATCAGTCTCACATATT
GAATCATGTATTGAAAAACAAGAGGGGCACATAAGCGGAACAgagcaaaa
aataaaacaatgcccACAAATGCTCTAAAATAGTTTGATTGATGGAATgc
cattatttatttttttcagttcattgacatttttttcgctaaaaaaaata
ataaacataCAGATTGTTATAGCCAGAATAGTTAAAGTTTTTGACATGAC
AGACAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056729-exon-scaffold_282-1491911889:189867..190875 | TCONS_00056729-exon-scaffold_282-1491911889:189867..190875 | Clytia hemisphaerica | exon |
| TCONS_00056729-exon-scaffold_282-1510915933:189867..190875 | TCONS_00056729-exon-scaffold_282-1510915933:189867..190875 | Clytia hemisphaerica | exon |
| TCONS_00056729-exon-scaffold_282-1575043694:189867..190875 | TCONS_00056729-exon-scaffold_282-1575043694:189867..190875 | Clytia hemisphaerica | exon |
| TCONS_00056729-exon-scaffold_282-1491911889:190933..193025 | TCONS_00056729-exon-scaffold_282-1491911889:190933..193025 | Clytia hemisphaerica | exon |
| TCONS_00056729-exon-scaffold_282-1510915933:190933..193025 | TCONS_00056729-exon-scaffold_282-1510915933:190933..193025 | Clytia hemisphaerica | exon |
| TCONS_00056729-exon-scaffold_282-1575043694:190933..193025 | TCONS_00056729-exon-scaffold_282-1575043694:190933..193025 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_282 | supercontig | scaffold_282:189867..193025 + |
Blast
BLAST of TCONS_00056729 vs. Swiss-Prot (Human)
Match: GLYG (Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4) HSP 1 Score: 104.76 bits (260), Expect = 9.105e-24 Identity = 91/290 (31.38%), Postives = 144/290 (49.66%), Query Frame = -2
Query: 1911 AWLTAMLNDNYAIGAIQLGHMLKKLSCYHKLIVLVSDGVTPGTREALRKVGFEVKLVEALDCNWMDRQKGRKERNLGLPGTFMRFHAWNYTQYKKIMYLXXXXXXXXXXDELFDLETDFNAAYCARPGIIDPCFNAGIILFKPSTKHYNGLMNLWGDLTKGTECPNDQVLLWHYY---ADHDMWNELPYAYNVRR---YLYHP--------LKIYHFACCLTKKPWQVKNKPTRQDV-AKFKGPFKEPWDMVILWWRYFYQALDEYKLNEWYNDVKNKI*LSNQLEDTVY 2735
A++T ND YA GA+ LG LK+ +L+VL + V+ R+ L V EV +V+ LD K LG+ T + H W+ TQY K +++D+D + + ++D+LFD E + +AA PG D CFN+G+ +++PS + YN L++L + +G+ DQ +L ++ A D+ LP+ YN+ Y Y P K+ HF + KPW P + V ++ P + +ILWW F + L + + VK+ N L D VY
Sbjct: 5 AFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELGV--TLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDRE-ELSAA--PDPGWPD-CFNSGVFVYQPSVETYNQLLHLASE--QGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFLGRV--KPWNYTYDPKTKSVKSEAHDPNMTHPEFLILWWNIF--TTNVLPLLQQFGLVKDTCSYVNVLSDLVY 282
The following BLAST results are available for this feature:
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