TCONS_00056786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056786
Unique NameTCONS_00056786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056786 ID=TCONS_00056786|Name=TCONS_00056786|organism=Clytia hemisphaerica|type=transcript|length=1468bp
AACGATGGAACGACAACAAAACAAAAGAAAGCATGTACTTTTGGTGAGAA
ATGTTATCGTACGAAAAACGGAGAACATATGAAAGAATATTCACATGAAA
AGAACGAAGTCGAAAATGAAAAGGATCAGGAAATGAAGGAAACTACAGAT
AAAGACAAGGAGCTGTGCAATGTTTTCACCGACATGTGCTTTACAATACA
CAAAGATGTcccgaagaagaagaaaatcaaacgTTTTATCATCGCATATG
ATGGTGATGTGGTTGATGACGTAGAAGATAGTGACGTCACTCACATCATT
ACTGAAACTCATattACTGAAGCCAAGGCAACTACAATACAAGTTCAACC
GGAATGGGTTTGGATATGTGTGAAAGCAaagaagttattcaaaattgacC
CCTTTCTTCTTGTCACTGCTTCATGAAAGATGTAttgaatttttatcatt
ttcatttttttaatcgGTACTGTTCagtattttagaaatatttaccCTTC
TCTACCATGACATATGTTAGCAGTTAAGTAAGTGtttatacagtatatgg
cccccaaaacggtgacggcccccaaaacggaggttttgcCTTGATGAGCC
ATGTTTGTACTTTAGAACCTGAGAAAGCTTAAGGTTCAATCCTAACACAT
TTCTCTTAAgtccgaaaaaagaaaaataccaaaatgtcatttttgacatg
gctatttttcttcttcctttttttttaaatagtttcGAAAATCCCTTTTT
TGGACTAAAACCGTCAAAAATCAAACAAGATTGGAAATTAACCCCTAAAA
ACTCGGTAACTCTGGAAAGTATAAACATATACCAACATAATGTATATCCA
CGTGAATTGAATTCCAGCCTCTAAATTAATTCAGAAATTATAAACCAACT
TGCAGGTCATCCCAAAAATCGTAAGGGCTTATGAGATGATTTTGGATGTC
CGAATTTCAGGAAAATCCTAAAAATCGTATCCTTATGCGGTATAAATTTA
GAAATATATTCAAAACATAATATGAGGAAGGAATTTGTGTTGTATGTATT
TTGTCAGTGTTTCGTTTGTACAACAATTTTTTATAGCAGTGTATGAACGG
TCACTTTCTTAACCTGTTTGGTTTAAATTTTTgtatggaatttttttatg
atctactttttgtttatttattgcgAAGATTATtataataaaatgtaatt
tatACAAATTATCGAATATTCGATCATagtattttcatcattttcaaatt
taaaaaatgtgacGACAACACTATTAATCAATCTATAGTGTATTGTAGTG
TCTAGGATTGGGTTATCGCTCAGTATtgtaaattataaaaatgaagaaat
tactGGATCGTAtagattgaatttaaatttattgtattctttgttttatc
caaggtaaattttttaagaaatatgcAACAAAACCATTAGCTTATTAACG
TGAATATATTTGTAGGCA
Run BLAST on NCBI

transcript from alignment at scaffold_282:450456..454197-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056786 ID=TCONS_00056786|Name=TCONS_00056786|organism=Clytia hemisphaerica|type=transcript|length=3742bp|location=Sequence derived from alignment at scaffold_282:450456..454197- (Clytia hemisphaerica)
AACGATGGAACGACAACAAAACAAAAGGTTTTCTTACTCAACTATAAACC
AAACTGAATAAGGAGGACCAGGGGGGTACATGTTCAGTGTAGTGACCCAT
ATAGTGACGCATATCAAGAATAGGTGATGGTAGCCACTACAGGGTATTAA
AAAGGTGGTATGAGGATTGAAATGTGTGGTGATAGCTGCTACTACACGTT
ACTAAAAGGGTGGTATAGGGATTTATATATGGGCGGTGATATCTACTACA
AGGTACTAAAGGGTGGTATAAGGACTCAAATTGGTGGTAATAGCTACTAC
ATGGTAGTAAAAGGAGTGGTCCCCTAAAAAAAATCTCAGAAAAAACTAGT
ACCATATACTAAAACAGGGTGGTGGTCCCAGATTTTTTTTAAATTACCGA
AAATCAGGTTATTCCCCCATGGGCTACTACACTGAACATGTACCCCCCCC
CCTGGGAGGACTGCATGCTTTTGTGAAACCAAATTTTAATACCATGTTTT
GTCTTCTACAGAATGATTCATGATATCAATGTACTCTCGCCCTATACAAT
TCATTTAATATTAGGAGGACAAGGGAAACTGTCTCTCTGATAACAATAAA
TTTGTATTTGGGATCGAAACTGGAACTCTACGCTGGAAGAAGGGGAGAGC
CTTTTGTTTTGGGCATAGCATTCAGGGGACAAGCATAAACTGACACTAGA
TGTATTTAGCGACAAATCCGTTGTTGATTTCTTTAATAATAAAAGTATAA
CCATTAGAGATTGAAAAATGTATTCGAATACAATGTTTTTGTCTTCGAGA
TCATTGAACGAACAATCGACTTAGAATGTCCACAGCTTCCTTATACAAGA
AACATCTCTCGTTCCTCGTTCCCGTACAAAACCAAAATGTCTACATTCTT
CCTCGATACGATCGTTAAGCTTTGCAATCTCTTCAATCTTCAATCTTGCA
ATCTTCAATGCCAGCCCAAACATAGAAGTGTTTTAAATTCATTCGCTAAG
CATCATATAATTAAATGCTGAATAAGATGGCTATAATGTTGGTTACTATA
GCAATAGTTATAAAATGGCAGATCATAAATAAATCCACCATGACAGTGCA
CTTCTCTTTTTCTTCTTCTTCTTCAAGAAATGAGATTCAACCATTTTAAA
GAAACAACAATCACTAATGGTTTAACTCACAAAGAATGTTCTTTTCTTTG
GAATTTTGATCTGAAAACCCTTAAGACACCTTCGTGATATAGTATGCCAT
GAATATCACATTTTTTCTGTTATCTTCAGAAAGCATGTACTTTTGGTGAG
AAATGTTATCGTACGAAAAACGGAGAACATATGAAAGAATATTCACATGA
AAAGAACGAAGTCGAAAATGAAAAGGATCAGGAAATGAAGGAAACTACAG
ATAAAGACAAGGTATTACAATACTGAAGATCAATGCTTGATCGACCTCTT
ATCTTAAATAAATTCCAAAGATGATAAATTCGAAGATGGCTTTCCTACTC
AAAAATGAGGCGAAAACGTTTAAAGTATGTCGATACATGCATAGAGTCGT
GGCCTGTTGCGAGGTAGTAGAGCCGATCTTTTAAAGACAAGGTGTGCCAG
AATTTTTTCCATTACAAAAACTTTGCCGGCTACGTTCTTTTCTTTCTCCA
CAAATACAGGTTTTTAACCAAAATTGGAAAATTTTACCCTAATATTTTTC
ATTAGTAAGGAGGTGCCTGAATCTCTACTTTTTCAATTTGCCTCCCCCGG
TCTTGATCAAGCCACCAAGCGACTACTTGTGGTGCGCACGTACAGTTTAT
AGTTTGTAGTTCAAACCTTTCAGATGACTTCTGTTCCTTTCATAGGAGCT
GTGCAATGTTTTCACCGACATGTGCTTTACAATACACAAAGATGTCCCGA
AGAAGAAGAAAATCAAACGTTTTATCATCGCGTAAGTCGTTTATACACCA
AACAAGATGACAAACTACCAGTTTTCCATGCCCGTCTCTTGCCAAAAGCC
AGTATTTCCCGCTATCGGTGAAATCACTATGGAGAAAAAAAGCTTTGATG
ATTTTAACCATTGGAAAGAAAGTATCAAAGTTTTCAATCTTGTAAAAAAA
ATGAATATTGAAGTTTAAAGTTAATCAAATTTCTGTAAAGTTCACTGTAT
CAGCGTATAATTTCTTCGTTTCTCACCGTATCATTGATGTTCATCATACG
TTTGTGTATTACTAGGTCTTGAATCATGCATGCTTTTATGTAATCATTTA
TTTTCTTCTCTTTTCTCCAGATATGATGGTGATGTGGTTGATGACGTAGA
AGATAGTGACGTCACTCACATCATTACTGAAACTCATGTAAGTTATAATT
TCGCTCAAAAAAACTGATCGTGATCGTGTACATGAATTTCCATGAAAATA
ATTTTGTTACAAGGTTGTTTCCTAGGTCATATGCATCCTGTTACATGATG
TTTGAAGAAAGTTTCATATACATTCTCTTGTAAATTTCAGTTGCAAAACC
ATTTTTTAAGCCCGTGTTTGAGCTATATTACGTTAAGTTATATTACGCTT
ATTATATATTTCTAATTTTTATGTTTTTTTTTCTAGATTACTGAAGCCAA
GGCAACTACAATACAAGTTCAACCGGAATGGGTTTGGATATGTGTGAAAG
CAAAGAAGTTATTCAAAATTGACCCCTTTCTTCTTGTCACTGCTTCATGA
AAGATGTATTGAATTTTTATCATTTTCATTTTTTTAATCGGTACTGTTCA
GTATTTTAGAAATATTTACCCTTCTCTACCATGACATATGTTAGCAGTTA
AGTAAGTGTTTATACAGTATATGGCCCCCAAAACGGTGACGGCCCCCAAA
ACGGAGGTTTTGCCTTGATGAGCCATGTTTGTACTTTAGAACCTGAGAAA
GCTTAAGGTTCAATCCTAACACATTTCTCTTAAGTCCGAAAAAAGAAAAA
TACCAAAATGTCATTTTTGACATGGCTATTTTTCTTCTTCCTTTTTTTTT
AAATAGTTTCGAAAATCCCTTTTTTGGACTAAAACCGTCAAAAATCAAAC
AAGATTGGAAATTAACCCCTAAAAACTCGGTAACTCTGGAAAGTATAAAC
ATATACCAACATAATGTATATCCACGTGAATTGAATTCCAGCCTCTAAAT
TAATTCAGAAATTATAAACCAACTTGCAGGTCATCCCAAAAATCGTAAGG
GCTTATGAGATGATTTTGGATGTCCGAATTTCAGGAAAATCCTAAAAATC
GTATCCTTATGCGGTATAAATTTAGAAATATATTCAAAACATAATATGAG
GAAGGAATTTGTGTTGTATGTATTTTGTCAGTGTTTCGTTTGTACAACAA
TTTTTTATAGCAGTGTATGAACGGTCACTTTCTTAACCTGTTTGGTTTAA
ATTTTTGTATGGAATTTTTTTATGATCTACTTTTTGTTTATTTATTGCGA
AGATTATTATAATAAAATGTAATTTATACAAATTATCGAATATTCGATCA
TAGTATTTTCATCATTTTCAAATTTAAAAAATGTGACGACAACACTATTA
ATCAATCTATAGTGTATTGTAGTGTCTAGGATTGGGTTATCGCTCAGTAT
TGTAAATTATAAAAATGAAGAAATTACTGGATCGTATAGATTGAATTTAA
ATTTATTGTATTCTTTGTTTTATCCAAGGTAAATTTTTTAAGAAATATGC
AACAAAACCATTAGCTTATTAACGTGAATATATTTGTAGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035767XLOC_035767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056786-exon-scaffold_282-1575043694:454171..454197TCONS_00056786-exon-scaffold_282-1575043694:454171..454197Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1575043694:452787..452918TCONS_00056786-exon-scaffold_282-1575043694:452787..452918Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1575043694:452267..452352TCONS_00056786-exon-scaffold_282-1575043694:452267..452352Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1575043694:451861..451927TCONS_00056786-exon-scaffold_282-1575043694:451861..451927Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1575043694:450456..451611TCONS_00056786-exon-scaffold_282-1575043694:450456..451611Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1510915933:454171..454197TCONS_00056786-exon-scaffold_282-1510915933:454171..454197Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1510915933:452787..452918TCONS_00056786-exon-scaffold_282-1510915933:452787..452918Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1510915933:452267..452352TCONS_00056786-exon-scaffold_282-1510915933:452267..452352Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1510915933:451861..451927TCONS_00056786-exon-scaffold_282-1510915933:451861..451927Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1510915933:450456..451611TCONS_00056786-exon-scaffold_282-1510915933:450456..451611Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1491911889:454171..454197TCONS_00056786-exon-scaffold_282-1491911889:454171..454197Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1491911889:452787..452918TCONS_00056786-exon-scaffold_282-1491911889:452787..452918Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1491911889:452267..452352TCONS_00056786-exon-scaffold_282-1491911889:452267..452352Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1491911889:451861..451927TCONS_00056786-exon-scaffold_282-1491911889:451861..451927Clytia hemisphaericaexon
TCONS_00056786-exon-scaffold_282-1491911889:450456..451611TCONS_00056786-exon-scaffold_282-1491911889:450456..451611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:450456..454197 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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