TCONS_00056794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056794
Unique NameTCONS_00056794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056794 ID=TCONS_00056794|Name=TCONS_00056794|organism=Clytia hemisphaerica|type=transcript|length=337bp
cTTATAATTGTCTTCCAAACTGGCAAAAACTTTATGATCAAGTTGTTGTT
AAGTTGCAGGATTATGAAAATGTTCGCGCGGTGGAGAAGTCTGAAGTTTT
ATCAACGAAGAGCAAAGCAAAGCTTTATGAAGCTAAAGAAAGACGACGTA
AAATTGGAGAGCAATGGGGCAAAGGTCCGGCACCTAAGCTAGCTAAGGAA
TCAACACCGTTTGTTGGGCGGGGAAGCAAACCAGTCCATAATGAATTGTA
ATTTTCCTAGGAATAACTCACATCCACAGACACCAAAAACTAGCATTTCT
GTCACAAAACACCCTCATCAAGCAAGAACCTTTAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_282:208886..209222

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056794 ID=TCONS_00056794|Name=TCONS_00056794|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at scaffold_282:208886..209222 (Clytia hemisphaerica)
GTTTAAAGGTTCTTGCTTGATGAGGGTGTTTTGTGACAGAAATGCTAGTT
TTTGGTGTCTGTGGATGTGAGTTATTCCTAGGAAAATTACAATTCATTAT
GGACTGGTTTGCTTCCCCGCCCAACAAACGGTGTTGATTCCTTAGCTAGC
TTAGGTGCCGGACCTTTGCCCCATTGCTCTCCAATTTTACGTCGTCTTTC
TTTAGCTTCATAAAGCTTTGCTTTGCTCTTCGTTGATAAAACTTCAGACT
TCTCCACCGCGCGAACATTTTCATAATCCTGCAACTTAACAACAACTTGA
TCATAAAGTTTTTGCCAGTTTGGAAGACAATTATAAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035774XLOC_035774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056794-exon-scaffold_282-1491911889:208886..209222TCONS_00056794-exon-scaffold_282-1491911889:208886..209222Clytia hemisphaericaexon
TCONS_00056794-exon-scaffold_282-1510915933:208886..209222TCONS_00056794-exon-scaffold_282-1510915933:208886..209222Clytia hemisphaericaexon
TCONS_00056794-exon-scaffold_282-1575043694:208886..209222TCONS_00056794-exon-scaffold_282-1575043694:208886..209222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_282supercontigscaffold_282:208886..209222 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
118.976	104.598	53.7497	35.9621	3.79833	2.95362	9.04149	3.03249	9.57394	5.48145	7.43314	14.5091	5.3809	8.09896	32.367	32.8169	1.71284	0.639789	54.3811	48.3158	1.44941	0	168.581	150.626	0	0.265585	12.6834	15.1835	89.0146	109.081
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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